Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002919

Physical Location & Seq

Genomic Coordinates Reverse (-)

2355003 .. 2357170

Gene Structure 2168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g02610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAACATTCGTGCCCTCCATAGCAATTTCTGCTCTCTGCTCCCTCTTCAACTTCCTTCTCGAATGGAAAGTCATTTGTGGTATGTTTTGCCTGAGGAGGTGAAGAGTGAGGGCCTTTTGAATCGGTATTTCGAGCTTCTGTCACCGTCTGAGAGAGATAATGTTTTGGGCATGCGTGGGATTGAGCTCCAGAAAAGAGCATTGCTTGCCCGGGCGTTGGTTCGCACTACGATTTCGAGATATACGGACCATCGAGTTGATCCGAGATCCTTAAAGTTTAAAAAGAACAGCCATGGGAAGCCTGAGGTAGAGTGGCAAATTGCAGATGGCTGGCAGCCACCACCGTTGCATTTCAACCTCTCTCACACTTCTTCCTTGATAGCTTGTGGTGTAACTGTGGATTCACCGATTGGTGTTGATGTGGAAGACAAGCAGCGGAAGTTGAAGAACCATATTTTAGCTTTTGCTCGACGGTACTTTTCTTCTCATGAAGTGGAACATTTATCTTCTATTTCGGACATTGAAATTCAGCGTCAACAGTTTATAAAATTATGGACTCTCAAGGAGGCATATGTGAAAGCATTGGGAATGGGCTTCTCTGCTTCTCCGTTTAATACCTTTACCATTCGATTGAGGGATGCAGCTAAGAGAGGCATCAATTTATCTGGGGATGTAGATTCTGAGATATCCGAAATTAGTGTTGAACCTTTTGGCCCCGTGAACCTCACAAGAAATTGGCAATTTTCGCTTCTAGAGTTGGCCGGTTCTCATTATGCTGCCATTTGTATGGAAAGACATAAAACCGTTGGAGGCAAAGAAAAAGCTCCGATAGAATTGACGGTGCGGAGAACTATTCCATATGTTGAAGAAGAATGTGTTACAGGAACTGATGCGGCCGTACCAATAGGCGGATTGAATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00770 map00770

Pfam Domains

Protein Families

ACPS

Protein Analysis

308

Amino Acids

34.7

Weight (kDa)

8.23

Isoelectric Point (pI)

54.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AASDHPPT_N	PF22624	42 - 127	5.5e-07	4'-phosphopantetheinyl transferase, N-terminal
ACPS	PF01648	136 - 223	6.6e-17	4'-phosphopantetheinyl transferase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02765 AT2G02765 AT2G02765 AT2G02765 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470
fragaria_vesca	FvH4_4g11630 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140
malus_domestica	MD12G1027200.v1.1 MD14G1027400.v1.1
prunus_persica	Prupe.7G104300_v2.0.a1 Prupe.7G104300_v2.0.a1 Prupe.7G104300_v2.0.a1 Prupe.7G104300_v2.0.a1
pyrus_communis	pycom12g02610
rosa_chinensis	RchiOBHm_Chr3g0474251
rosa_rugosa	Rorug03G0139700 Rorug03G0139700
rosa_samantha	Rh3AG190300 Rh3BG219400 Rh3CG214700 Rh3DG214900
rosa_wichuraiana	Rw3G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	545
AciI	CCGC	4 cut(s)	436, 844, 893, 909
AclWI	GGATC	2 cut(s)	254, 261
AcoI	YGGCCR	2 cut(s)	759, 894
AcsI	RAATTY	1 cut(s)	525
AfaI	GTAC	2 cut(s)	476, 900
AfiI	CCNNNNNNNGG	2 cut(s)	217, 908
AgsI	TTSAA	8 cut(s)	50, 121, 355, 445, 524, 704, 866, 916
AluBI	AGCT	6 cut(s)	136, 187, 383, 461, 644, 824
AluI	AGCT	6 cut(s)	136, 187, 383, 461, 644, 824
Alw21I	GWGCWC	1 cut(s)	189
AlwI	GGATC	2 cut(s)	254, 261
AlwNI	CAGNNNCTG	1 cut(s)	887
Ama87I	CYCGRG	1 cut(s)	210
AoxI	GGCC	4 cut(s)	112, 712, 759, 894
ApeKI	GCWGC	4 cut(s)	334, 433, 641, 776
ApoI	RAATTY	1 cut(s)	525
ArsI	GACNNNNNNTTYG	2 cut(s)	55, 87
AspS9I	GGNCC	3 cut(s)	112, 247, 713
AsuC2I	CCSGG	2 cut(s)	211, 212
AsuHPI	GGTGA	3 cut(s)	112, 135, 396
AvaI	CYCGRG	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	247
AxyI	CCTNAGG	2 cut(s)	93, 303
BaeGI	GKGCMC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	4 cut(s)	346, 445, 653, 763
BccI	CCATC	2 cut(s)	258, 320
BceAI	ACGGC	1 cut(s)	881
BcnI	CCSGG	2 cut(s)	211, 212
BfaI	CTAG	1 cut(s)	752
BisI	GCNGC	5 cut(s)	335, 434, 642, 777, 894
BlsI	GCNGC	5 cut(s)	336, 435, 643, 778, 895
Bme1390I	CCNGG	2 cut(s)	211, 212
Bme18I	GGWCC	1 cut(s)	247
BmeT110I	CYCGRG	1 cut(s)	210
BmgT120I	GGNCC	3 cut(s)	112, 247, 713
BmiI	GGNNCC	1 cut(s)	715
BmrFI	CCNGG	2 cut(s)	211, 212
BmsI	GCATC	3 cut(s)	628, 663, 880
BpiI	GAAGAC	1 cut(s)	432
BpmI	CTGGAG	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	545
BpuMI	CCSGG	2 cut(s)	211, 212
BsaJI	CCNNGG	2 cut(s)	210, 292
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 908
Bse118I	RCCGGY	1 cut(s)	761
Bse21I	CCTNAGG	2 cut(s)	93, 303
Bse3DI	GCAATG	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	210, 292
BseGI	GGATG	2 cut(s)	643, 676
BseLI	CCNNNNNNNGG	2 cut(s)	217, 908
BseMI	GCAATG	1 cut(s)	200
BseMII	CTCAG	4 cut(s)	84, 141, 294, 672
BseRI	GAGGAG	1 cut(s)	110
BseSI	GKGCMC	1 cut(s)	16
BseX3I	CGGCCG	1 cut(s)	894
BseXI	GCAGC	4 cut(s)	346, 445, 653, 763
Bsh1285I	CGRYCG	1 cut(s)	897
BshFI	GGCC	4 cut(s)	114, 714, 761, 896
BsiEI	CGRYCG	1 cut(s)	897
BsiHKAI	GWGCWC	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	211, 762
BslI	CCNNNNNNNGG	2 cut(s)	217, 908
BsnI	GGCC	4 cut(s)	114, 714, 761, 896
BsoBI	CYCGRG	1 cut(s)	210
Bsp1286I	GDGCHC	2 cut(s)	16, 189
Bsp143I	GATC	2 cut(s)	259, 266
Bsp19I	CCATGG	1 cut(s)	292
BspACI	CCGC	4 cut(s)	436, 844, 893, 909
BspANI	GGCC	4 cut(s)	114, 714, 761, 896
BspCNI	CTCAG	4 cut(s)	85, 142, 295, 673
BspHI	TCATGA	1 cut(s)	487
BspLI	GGNNCC	1 cut(s)	715
BspPI	GGATC	2 cut(s)	254, 261
BsrDI	GCAATG	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	761
BssAI	RCCGGY	1 cut(s)	761
BssECI	CCNNGG	2 cut(s)	210, 292
BssMI	GATC	2 cut(s)	259, 266
BssT1I	CCWWGG	1 cut(s)	292
Bst4CI	ACNGT	7 cut(s)	147, 345, 397, 474, 540, 805, 841
Bst6I	CTCTTC	2 cut(s)	51, 98
BstAPI	GCANNNNNTGC	2 cut(s)	30, 206
BstC8I	GCNNGC	3 cut(s)	173, 207, 332
BstDEI	CTNAG	5 cut(s)	93, 150, 303, 645, 681
BstDSI	CCRYGG	1 cut(s)	292
BstF5I	GGATG	2 cut(s)	643, 676
BstKTI	GATC	2 cut(s)	262, 269
BstMBI	GATC	2 cut(s)	259, 266
BstMCI	CGRYCG	1 cut(s)	897
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 206, 745
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	2 cut(s)	209, 210
BstSLI	GKGCMC	1 cut(s)	16
BstV1I	GCAGC	4 cut(s)	346, 445, 653, 763
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	266
BstXI	CCANNNNNNTGG	1 cut(s)	787
BstYI	RGATCY	1 cut(s)	266
BstZI	CGGCCG	1 cut(s)	894
Bsu36I	CCTNAGG	2 cut(s)	93, 303
BsuRI	GGCC	4 cut(s)	114, 714, 761, 896
BtgI	CCRYGG	1 cut(s)	292
BtsCI	GGATG	2 cut(s)	643, 676
Cac8I	GCNNGC	3 cut(s)	173, 207, 332
CaiI	CAGNNNCTG	1 cut(s)	887
CciI	TCATGA	1 cut(s)	487
Cfr10I	RCCGGY	1 cut(s)	761
Cfr13I	GGNCC	3 cut(s)	112, 247, 713
Cfr9I	CCCGGG	1 cut(s)	210
CseI	GACGC	1 cut(s)	521
Csp6I	GTAC	2 cut(s)	475, 899
CspCI	CAANNNNNGTGG	2 cut(s)	327, 362
CviAII	CATG	3 cut(s)	172, 293, 488
CviQI	GTAC	2 cut(s)	475, 899
DdeI	CTNAG	5 cut(s)	93, 150, 303, 645, 681
DpnI	GATC	2 cut(s)	261, 268
DpnII	GATC	2 cut(s)	259, 266
DraI	TTTAAA	1 cut(s)	280
EaeI	YGGCCR	2 cut(s)	759, 894
EagI	CGGCCG	1 cut(s)	894
Eam1104I	CTCTTC	2 cut(s)	51, 98
EarI	CTCTTC	2 cut(s)	51, 98
EciI	GGCGGA	1 cut(s)	924
Ecl136II	GAGCTC	1 cut(s)	187
EclXI	CGGCCG	1 cut(s)	894
Eco130I	CCWWGG	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	189
Eco32I	GATATC	1 cut(s)	687
Eco47I	GGWCC	1 cut(s)	247
Eco52I	CGGCCG	1 cut(s)	894
Eco53kI	GAGCTC	1 cut(s)	187
Eco81I	CCTNAGG	2 cut(s)	93, 303
Eco88I	CYCGRG	1 cut(s)	210
EcoICRI	GAGCTC	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRV	GATATC	1 cut(s)	687
EcoT14I	CCWWGG	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	292
FaeI	CATG	3 cut(s)	175, 296, 491
FatI	CATG	3 cut(s)	171, 292, 487
FauNDI	CATATG	2 cut(s)	571, 859
Fnu4HI	GCNGC	5 cut(s)	335, 434, 642, 777, 894
FokI	GGATG	2 cut(s)	650, 683
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	5 cut(s)	335, 434, 642, 777, 894
FspBI	CTAG	1 cut(s)	752
GluI	GCNGC	5 cut(s)	335, 434, 642, 777, 894
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	4 cut(s)	114, 714, 761, 896
HapII	CCGG	2 cut(s)	211, 762
HgaI	GACGC	1 cut(s)	521
Hin1II	CATG	3 cut(s)	175, 296, 491
HincII	GTYRAC	1 cut(s)	536
HindII	GTYRAC	1 cut(s)	536
HinfI	GANTC	4 cut(s)	121, 401, 556, 677
HpaII	CCGG	2 cut(s)	211, 762
HphI	GGTGA	3 cut(s)	112, 135, 396
Hpy166II	GTNNAC	2 cut(s)	536, 721
Hpy188I	TCNGA	6 cut(s)	151, 264, 517, 682, 691, 828
Hpy188III	TCNNGA	5 cut(s)	60, 190, 237, 488, 752
Hpy8I	GTNNAC	2 cut(s)	536, 721
Hpy99I	CGWCG	1 cut(s)	474
HpyAV	CCTTC	1 cut(s)	66
HpyCH4III	ACNGT	7 cut(s)	147, 345, 397, 474, 540, 805, 841
HpyCH4V	TGCA	3 cut(s)	323, 349, 641
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 206, 745
HpyF3I	CTNAG	5 cut(s)	93, 150, 303, 645, 681
Hsp92II	CATG	3 cut(s)	175, 296, 491
Kzo9I	GATC	2 cut(s)	259, 266
LmnI	GCTCC	3 cut(s)	45, 192, 829
LpnPI	CCDG	8 cut(s)	105, 203, 224, 315, 316, 651, 775, 867
Lsp1109I	GCAGC	4 cut(s)	346, 445, 653, 763
LweI	GCATC	3 cut(s)	628, 663, 880
MaeI	CTAG	1 cut(s)	752
MaeIII	GTNAC	3 cut(s)	141, 391, 877
MalI	GATC	2 cut(s)	261, 268
MboI	GATC	2 cut(s)	259, 266
MboII	GAAGA	9 cut(s)	38, 115, 363, 437, 457, 474, 498, 878, 881
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	2 cut(s)	16, 189
MlyI	GAGTC	1 cut(s)	550
MmeI	TCCRAC	1 cut(s)	787
MseI	TTAA	3 cut(s)	272, 279, 612
MslI	CAYNNNNRTG	1 cut(s)	785
MspA1I	CMGCKG	1 cut(s)	436
MspI	CCGG	2 cut(s)	211, 762
MspR9I	CCNGG	2 cut(s)	211, 212
MwoI	GCNNNNNNNGC	3 cut(s)	30, 206, 745
NciI	CCSGG	2 cut(s)	211, 212
NcoI	CCATGG	1 cut(s)	292
NdeI	CATATG	2 cut(s)	571, 859
NdeII	GATC	2 cut(s)	259, 266
NlaIII	CATG	3 cut(s)	175, 296, 491
NlaIV	GGNNCC	1 cut(s)	715
NmuCI	GTSAC	1 cut(s)	141
NspI	RCATGY	1 cut(s)	175
PaeI	GCATGC	1 cut(s)	175
PagI	TCATGA	1 cut(s)	487
PfeI	GAWTC	3 cut(s)	121, 401, 677
PkrI	GCNGC	5 cut(s)	336, 435, 643, 778, 895
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
PsiI	TTATAA	1 cut(s)	545
Psp124BI	GAGCTC	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	715
PspPI	GGNCC	3 cut(s)	112, 247, 713
PstNI	CAGNNNCTG	1 cut(s)	887
PsuI	RGATCY	1 cut(s)	266
RsaI	GTAC	2 cut(s)	476, 900
RsaNI	GTAC	2 cut(s)	475, 899
RseI	CAYNNNNRTG	1 cut(s)	785
SacI	GAGCTC	1 cut(s)	189
SaqAI	TTAA	3 cut(s)	272, 279, 612
SatI	GCNGC	5 cut(s)	335, 434, 642, 777, 894
Sau3AI	GATC	2 cut(s)	259, 266
Sau96I	GGNCC	3 cut(s)	112, 247, 713
SchI	GAGTC	1 cut(s)	550
ScrFI	CCNGG	2 cut(s)	211, 212
SduI	GDGCHC	2 cut(s)	16, 189
SfaNI	GCATC	3 cut(s)	628, 663, 880
SinI	GGWCC	1 cut(s)	247
SmaI	CCCGGG	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	785
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
SphI	GCATGC	1 cut(s)	175
SrfI	GCCCGGGC	1 cut(s)	212
SsiI	CCGC	4 cut(s)	436, 844, 893, 909
SspMI	CTAG	1 cut(s)	752
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	2 cut(s)	209, 210
StyI	CCWWGG	1 cut(s)	292
TaaI	ACNGT	7 cut(s)	147, 345, 397, 474, 540, 805, 841
TaqI	TCGA	6 cut(s)	61, 132, 236, 253, 469, 628
TauI	GCSGC	1 cut(s)	896
TfiI	GAWTC	3 cut(s)	121, 401, 677
Tru1I	TTAA	3 cut(s)	272, 279, 612
Tru9I	TTAA	3 cut(s)	272, 279, 612
TseFI	GTSAC	1 cut(s)	141
TseI	GCWGC	4 cut(s)	334, 433, 641, 776
Tsp45I	GTSAC	1 cut(s)	141
TspDTI	ATGAA	2 cut(s)	17, 504
TspGWI	ACGGA	2 cut(s)	260, 597
TspMI	CCCGGG	1 cut(s)	210
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	1 cut(s)	525
XbaI	TCTAGA	1 cut(s)	751
XceI	RCATGY	1 cut(s)	175
XmaI	CCCGGG	1 cut(s)	210
XspI	CTAG	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.