Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0014701

Physical Location & Seq

Genomic Coordinates Reverse (-)

15444284 .. 15445454

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g11720.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGCCAATCTTTGGCCTAGCCTGCTTATTGCCTTGGCAATAACCTTGATAGCAAGTGTAGCTGCTAGTTATGAGAAACCATATGTTTATGCATCTCCACCACCACCATCACACAAACACAAGTCCACGCAATCATATCATTACAAGTCACCACCACCACCAACTTACAAACATAAATCATCACCGTCGTACCATTACAAGTCACCACCACCACCATCTCACAAGCCCAAATCAGCACCACCTTATTATTACAAATCACCACCACCGCCGTCTTATATACATAAGTCATCACCATCTTATCATTACAAGTCATCGCCGTCGCCGTCATATAAACACAAGTCATCACATTCTTACCATTACAAGTCACCACCACCACCCGTTCATTATGAATCACCAAAATATTACTACAAGTCCCCACCTCCTCCATATGTCTACAGGTCTCCTCCACCACCGTCGCCAAAACCATACGTGTACAAGTCTCCACCACCACCATCACCGAAGCCATACGTCTACAAGTCTCCTCCACCACCGTCACTGAAGCCGTATGTGTACAAGTCTCCACCACCACCACCACCAAAATACTACTACAAATCACCACCACCACAGACTTACATCGATAAGTCACCACCACCACCACTAGCATACATCTACAAGTCACCACCACCACCACTTTCTCTCCCTCACCTACCCTACATTTACAAATCACCACCACCACATTCACCATCTCCTCCTCCACCATACATCTACAATTCACCTCCACCCCCGCCTTACATGTATAATTCACCACCACCACCCTCTCCATCACCTCCACCACCTTACATTTACAACTCACCACCACCACCATCTCCCTCACCTCCACCACCATATGTTTACAAGTCACCGTCTCCATCACCTCCCTCTCCTTATGTCTACAAGTCACCACCACCACCACCCCCATCTCCATCTCCACCACCACCATACGTTTACAAGTCACCACCACCTCCATCTCGAGTCTCACTACCTCTTTACGACTACAAATCTCCACCACCACTATCTCCCCATTATGTTCACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Extensin_2

Protein Analysis

352

Amino Acids

39.28

Weight (kDa)

9.71

Isoelectric Point (pI)

139.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014701)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29310 FvH4_4g11720
prunus_persica	Prupe.4G245200_v2.0.a1 Prupe.4G245600_v2.0.a1
rosa_laevigata	RLG00000034892
rosa_multiflora	Rmu_co8370591.1_g000001 Rmu_sc0001631.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026900 Rroxscaffold_5G00353330
rosa_rugosa	Rorug04G0088600 Rorug05G0280800 Rorug05G0280900
rosa_samantha	Rh4BG150300 Rh4CG161100 Rh4DG146000
rosa_wichuraiana	Rw4G012560 Rw5G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	12
AccI	GTMKAC	3 cut(s)	432, 510, 909
AciI	CCGC	2 cut(s)	266, 764
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	557
AfaI	GTAC	3 cut(s)	191, 473, 551
AfiI	CCNNNNNNNGG	1 cut(s)	12
AflIII	ACRYGT	2 cut(s)	468, 771
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
Alw26I	GTCTC	6 cut(s)	444, 483, 522, 561, 888, 997
Ama87I	CYCGRG	1 cut(s)	987
AoxI	GGCC	2 cut(s)	3, 14
ApeKI	GCWGC	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	987
BaeI	ACNNNNGTAYC	2 cut(s)	173, 206
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	49
BceAI	ACGGC	4 cut(s)	253, 301, 307, 526
BcoDI	GTCTC	6 cut(s)	444, 483, 522, 561, 888, 997
BfaI	CTAG	3 cut(s)	18, 66, 638
BfmI	CTRYAG	1 cut(s)	433
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	987
BmsI	GCATC	1 cut(s)	101
Bsa29I	ATCGAT	1 cut(s)	615
BsaAI	YACGTR	1 cut(s)	469
BsaI	GGTCTC	1 cut(s)	444
BsaJI	CCNNGG	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	660, 690
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
BseCI	ATCGAT	1 cut(s)	615
BseDI	CCNNGG	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseRI	GAGGAG	5 cut(s)	411, 432, 510, 717, 720
BseXI	GCAGC	1 cut(s)	49
BshFI	GGCC	2 cut(s)	5, 16
BshVI	ATCGAT	1 cut(s)	615
BsiHKCI	CYCGRG	1 cut(s)	987
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmAI	GTCTC	6 cut(s)	444, 483, 522, 561, 888, 997
BsmBI	CGTCTC	1 cut(s)	888
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	2 cut(s)	5, 16
Bso31I	GGTCTC	1 cut(s)	444
BsoBI	CYCGRG	1 cut(s)	987
Bsp1407I	TGTACA	2 cut(s)	471, 549
BspACI	CCGC	2 cut(s)	266, 764
BspANI	GGCC	2 cut(s)	5, 16
BspDI	ATCGAT	1 cut(s)	615
BspTNI	GGTCTC	1 cut(s)	444
BsrGI	TGTACA	2 cut(s)	471, 549
BssECI	CCNNGG	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	33
Bst4CI	ACNGT	4 cut(s)	186, 453, 531, 882
BstAUI	TGTACA	2 cut(s)	471, 549
BstBAI	YACGTR	1 cut(s)	469
BstC8I	GCNNGC	1 cut(s)	23
BstMAI	GTCTC	6 cut(s)	444, 483, 522, 561, 888, 997
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 59
BstNSI	RCATGY	1 cut(s)	775
BstSFI	CTRYAG	1 cut(s)	433
BstV1I	GCAGC	1 cut(s)	49
Bsu15I	ATCGAT	1 cut(s)	615
BsuRI	GGCC	2 cut(s)	5, 16
BsuTUI	ATCGAT	1 cut(s)	615
BtgZI	GCGATG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	533
Cac8I	GCNNGC	1 cut(s)	23
ClaI	ATCGAT	1 cut(s)	615
Csp6I	GTAC	3 cut(s)	190, 472, 550
CviAII	CATG	1 cut(s)	772
CviJI	RGCY	7 cut(s)	5, 16, 21, 62, 226, 502, 541
CviKI_1	RGCY	7 cut(s)	5, 16, 21, 62, 226, 502, 541
CviQI	GTAC	3 cut(s)	190, 472, 550
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	444
Eco57I	CTGAAG	1 cut(s)	557
Eco88I	CYCGRG	1 cut(s)	987
EcoT14I	CCWWGG	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	33
Esp3I	CGTCTC	1 cut(s)	888
FaeI	CATG	1 cut(s)	775
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	1 cut(s)	771
FauI	CCCGC	1 cut(s)	771
FauNDI	CATATG	3 cut(s)	82, 427, 865
FblI	GTMKAC	3 cut(s)	432, 510, 909
Fnu4HI	GCNGC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	3 cut(s)	18, 66, 638
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	2 cut(s)	5, 16
Hin1II	CATG	1 cut(s)	775
HinfI	GANTC	2 cut(s)	389, 990
Hpy166II	GTNNAC	9 cut(s)	126, 433, 472, 511, 550, 871, 910, 964, 1048
Hpy188III	TCNNGA	1 cut(s)	987
Hpy8I	GTNNAC	9 cut(s)	126, 433, 472, 511, 550, 871, 910, 964, 1048
Hpy99I	CGWCG	3 cut(s)	190, 322, 457
HpyCH4III	ACNGT	4 cut(s)	186, 453, 531, 882
HpyCH4IV	ACGT	3 cut(s)	468, 507, 960
HpyCH4V	TGCA	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 59
HpySE526I	ACGT	3 cut(s)	468, 507, 960
Hsp92II	CATG	1 cut(s)	775
LpnPI	CCDG	2 cut(s)	35, 421
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	3 cut(s)	18, 66, 638
MaeII	ACGT	3 cut(s)	468, 507, 960
MaeIII	GTNAC	9 cut(s)	147, 201, 363, 531, 621, 654, 876, 915, 969
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	748, 778
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	999
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	94
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	2 cut(s)	22, 59
NdeI	CATATG	3 cut(s)	82, 427, 865
NlaIII	CATG	1 cut(s)	775
NmuCI	GTSAC	9 cut(s)	147, 201, 363, 531, 621, 654, 876, 915, 969
NsiI	ATGCAT	1 cut(s)	94
NspI	RCATGY	1 cut(s)	775
PaeR7I	CTCGAG	1 cut(s)	987
PciI	ACATGT	1 cut(s)	771
PcsI	WCGNNNNNNNCGW	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	389
PflMI	CCANNNNNTGG	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	1 cut(s)	998
PpsI	GAGTC	1 cut(s)	998
Ppu21I	YACGTR	1 cut(s)	469
PscI	ACATGT	1 cut(s)	771
RsaI	GTAC	3 cut(s)	191, 473, 551
RsaNI	GTAC	3 cut(s)	190, 472, 550
SatI	GCNGC	1 cut(s)	63
SchI	GAGTC	1 cut(s)	999
SfaNI	GCATC	1 cut(s)	101
SfcI	CTRYAG	1 cut(s)	433
Sfr274I	CTCGAG	1 cut(s)	987
SlaI	CTCGAG	1 cut(s)	987
SmlI	CTYRAG	1 cut(s)	987
SmoI	CTYRAG	1 cut(s)	987
Sse9I	AATT	2 cut(s)	748, 778
SsiI	CCGC	2 cut(s)	266, 764
SspI	AATATT	1 cut(s)	401
SspMI	CTAG	3 cut(s)	18, 66, 638
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	4 cut(s)	186, 453, 531, 882
TaiI	ACGT	3 cut(s)	471, 510, 963
TaqI	TCGA	2 cut(s)	615, 988
TasI	AATT	2 cut(s)	748, 778
TatI	WGTACW	2 cut(s)	471, 549
TfiI	GAWTC	1 cut(s)	389
TscAI	CASTG	1 cut(s)	540
TseFI	GTSAC	9 cut(s)	147, 201, 363, 531, 621, 654, 876, 915, 969
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	9 cut(s)	147, 201, 363, 531, 621, 654, 876, 915, 969
TspDTI	ATGAA	2 cut(s)	371, 402
TspRI	CASTG	1 cut(s)	540
Van91I	CCANNNNNTGG	1 cut(s)	12
XceI	RCATGY	1 cut(s)	775
XhoI	CTCGAG	1 cut(s)	987
XmiI	GTMKAC	3 cut(s)	432, 510, 909
XspI	CTAG	3 cut(s)	18, 66, 638
Zsp2I	ATGCAT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.