RLG00000034892

Extensin-2-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
56641351 .. 56643667
2317 bp
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UTR
Exon/CDS
Intron
RLM00000034892

Sequence Viewer

Length: 336 bp
ATGGCCAGTCTATGGCCAAGCCTGCTGTATGCATTGGCTATATGCTTTATAGCCACCAGTGTAGCTGCTGGTGATGATAAACCTTATGTTTATGCATCGCCACCTCCACCACCCTCTTATGACTACAAGTCTCCACCACCTTACCAGTCCAAGTCACCTCCGTACTACTACAAGTCCCCTCCTCCACCTTCACCATCACCTCCTCCTCCACGATATTGTTTGTTCCATTTGTGTTATAAATTCGAAAAACAAGTAATGGCTGCAAGAGAGAGTTCTATCCTAATGATGATTTGCTTACATCTGGTCAATCTAAAATGGAACCAGAACAGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

112

Amino Acids

12.49

Weight (kDa)

8.88

Isoelectric Point (pI)

86.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 237
AccB7I CCANNNNNTGG 1 cut(s) 12
AcoI YGGCCR 2 cut(s) 3, 14
AcsI RAATTY 1 cut(s) 239
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 12
AhdI GACNNNNNGTC 1 cut(s) 127
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
Alw26I GTCTC 1 cut(s) 135
AoxI GGCC 2 cut(s) 3, 14
ApeKI GCWGC 2 cut(s) 65, 260
ApoI RAATTY 1 cut(s) 239
AsuHPI GGTGA 4 cut(s) 83, 147, 183, 189
AsuII TTCGAA 1 cut(s) 243
BalI TGGCCA 2 cut(s) 5, 16
BbvI GCAGC 2 cut(s) 52, 247
BccI CCATC 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 135
BisI GCNGC 2 cut(s) 66, 261
BlsI GCNGC 2 cut(s) 67, 262
BmeRI GACNNNNNGTC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 320
BmsI GCATC 1 cut(s) 104
Bpu14I TTCGAA 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse1I ACTGG 3 cut(s) 6, 57, 145
BseLI CCNNNNNNNGG 1 cut(s) 12
BseNI ACTGG 3 cut(s) 6, 57, 145
BseRI GAGGAG 3 cut(s) 171, 192, 195
BseXI GCAGC 2 cut(s) 52, 247
BshFI GGCC 2 cut(s) 5, 16
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 160
BsnI GGCC 2 cut(s) 5, 16
Bsp119I TTCGAA 1 cut(s) 243
BspANI GGCC 2 cut(s) 5, 16
BspLI GGNNCC 1 cut(s) 320
BspT104I TTCGAA 1 cut(s) 243
BsrI ACTGG 3 cut(s) 6, 57, 145
Bst4CI ACNGT 1 cut(s) 329
BstBI TTCGAA 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 23
BstMAI GTCTC 1 cut(s) 135
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstV1I GCAGC 2 cut(s) 52, 247
BsuRI GGCC 2 cut(s) 5, 16
BtgZI GCGATG 1 cut(s) 81
BtsIMutI CAGTG 2 cut(s) 64, 334
Cac8I GCNNGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 163
CviJI RGCY 7 cut(s) 5, 16, 21, 38, 53, 65, 260
CviKI_1 RGCY 7 cut(s) 5, 16, 21, 38, 53, 65, 260
CviQI GTAC 1 cut(s) 163
DriI GACNNNNNGTC 1 cut(s) 127
EaeI YGGCCR 2 cut(s) 3, 14
Eam1105I GACNNNNNGTC 1 cut(s) 127
EcoT22I ATGCAT 2 cut(s) 34, 97
FaiI YATR 9 cut(s) 13, 30, 41, 43, 50, 87, 93, 120, 237
FaqI GGGAC 1 cut(s) 160
Fnu4HI GCNGC 2 cut(s) 66, 261
Fsp4HI GCNGC 2 cut(s) 66, 261
GluI GCNGC 2 cut(s) 66, 261
HaeIII GGCC 2 cut(s) 5, 16
HphI GGTGA 4 cut(s) 83, 147, 183, 189
HpyAV CCTTC 1 cut(s) 198
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4V TGCA 3 cut(s) 32, 95, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
LpnPI CCDG 6 cut(s) 19, 35, 54, 70, 158, 287
Lsp1109I GCAGC 2 cut(s) 52, 247
LweI GCATC 1 cut(s) 104
MaeIII GTNAC 1 cut(s) 153
MlsI TGGCCA 2 cut(s) 5, 16
MluCI AATT 1 cut(s) 239
MluNI TGGCCA 2 cut(s) 5, 16
MnlI CCTC 8 cut(s) 114, 124, 168, 189, 192, 210, 213, 216
Mox20I TGGCCA 2 cut(s) 5, 16
Mph1103I ATGCAT 2 cut(s) 34, 97
MscI TGGCCA 2 cut(s) 5, 16
Msp20I TGGCCA 2 cut(s) 5, 16
MwoI GCNNNNNNNGC 1 cut(s) 22
NlaIV GGNNCC 1 cut(s) 320
NmuCI GTSAC 1 cut(s) 153
NsiI ATGCAT 2 cut(s) 34, 97
NspV TTCGAA 1 cut(s) 243
PflMI CCANNNNNTGG 1 cut(s) 12
PkrI GCNGC 2 cut(s) 67, 262
PsiI TTATAA 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 320
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SatI GCNGC 2 cut(s) 66, 261
SetI ASST 7 cut(s) 67, 85, 106, 142, 160, 190, 202
SfaNI GCATC 1 cut(s) 104
SfuI TTCGAA 1 cut(s) 243
Sse9I AATT 1 cut(s) 239
TaaI ACNGT 1 cut(s) 329
TaqI TCGA 1 cut(s) 243
TasI AATT 1 cut(s) 239
TscAI CASTG 2 cut(s) 64, 334
TseFI GTSAC 1 cut(s) 153
TseI GCWGC 2 cut(s) 65, 260
Tsp45I GTSAC 1 cut(s) 153
TspGWI ACGGA 1 cut(s) 150
TspRI CASTG 2 cut(s) 64, 334
Van91I CCANNNNNTGG 1 cut(s) 12
XapI RAATTY 1 cut(s) 239
Zsp2I ATGCAT 2 cut(s) 34, 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.