Prupe.4G245200_v2.0.a1

Extensin-2-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
16267179 .. 16270105
2927 bp
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UTR
Exon/CDS
Intron
Prupe.4G245200.1

Sequence Viewer

Length: 738 bp
ATGGGAACCTCTTTACAGCCGAGGCATTTGCCTCTGGTTTATGCTGTGGCATTCTGCCTCATTGCAGTTAGTGTTGCCGCTGATTATAGGAAGCCTTATATTTATGCTTCGCCGCCACCGCCATCCCAAAAAACGCAACCACATTACCACAATTATCCACCTTTCAAGCTTCCATCAGTCCCAGAGCATTCAGGGCACTACCCTCCATACCCTTATAAGGCTCCTCCATCACCTTATGTGTACAAGTCTCCACCACCTCCTCCTTACTTATACAAATCTCCACCTCCACCATCCCCATCACCGCCTCCTCCTTATGTTTATAAATCTCCACCTCAACCATCTCCATCACCACCACCGCCGGTTTTTAGGATGAATCTGGCAGTGGCATTGGGGAATGGGGAGAGGGGTGAGGGGTCTGTGGGTGGTGGTCATTGGGGAATTGGGGAGAAGAAATCCGGCCTCGGTTGGTCACCCCCACCTCCATCGCCATCACCTCCCCCTCCTTATATCTACAAATCACATCCACCTCCATCTCCATCACCTCCTCCTCCCTACATCTATAAATCTCCACCACCTCCATCACCTTCTCCTCCTCCTCCTTATCTCTACAAATCTCCACCACCACCATCGCCATCACCTGCCCATACATACCACTACAACTCTCCCCCTCCTCCATTGAAGTCTCCACCACCCCCCCAATATTACTACGAAACAGCTCCACCACCAAAGCACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

246

Amino Acids

26.63

Weight (kDa)

9.54

Isoelectric Point (pI)

117.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 216, 321
AarI CACCTGC 1 cut(s) 646
Acc36I ACCTGC 1 cut(s) 646
AciI CCGC 5 cut(s) 78, 113, 119, 302, 356
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 217
AgsI TTSAA 2 cut(s) 166, 679
AluBI AGCT 2 cut(s) 169, 716
AluI AGCT 2 cut(s) 169, 716
Alw26I GTCTC 2 cut(s) 252, 687
AoxI GGCC 1 cut(s) 457
AsuHPI GGTGA 9 cut(s) 222, 291, 339, 419, 462, 483, 531, 573, 627
BaeGI GKGCMC 1 cut(s) 198
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BcoDI GTCTC 2 cut(s) 252, 687
BfuAI ACCTGC 1 cut(s) 646
BisI GCNGC 2 cut(s) 78, 113
BlsI GCNGC 2 cut(s) 79, 114
BmiI GGNNCC 2 cut(s) 7, 222
BsaJI CCNNGG 2 cut(s) 20, 460
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse118I RCCGGY 1 cut(s) 358
Bse3DI GCAATG 1 cut(s) 60
BseDI CCNNGG 2 cut(s) 20, 460
BseGI GGATG 4 cut(s) 122, 290, 375, 520
BseLI CCNNNNNNNGG 1 cut(s) 217
BseMI GCAATG 1 cut(s) 60
BseRI GAGGAG 9 cut(s) 213, 249, 297, 534, 537, 579, 582, 585, 660
BseSI GKGCMC 1 cut(s) 198
BshFI GGCC 1 cut(s) 459
BsiSI CCGG 2 cut(s) 359, 456
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 217
BsmAI GTCTC 2 cut(s) 252, 687
BsmFI GGGAC 1 cut(s) 164
BsmI GAATGC 2 cut(s) 50, 187
BsnI GGCC 1 cut(s) 459
Bsp1286I GDGCHC 1 cut(s) 198
Bsp1407I TGTACA 1 cut(s) 240
BspACI CCGC 5 cut(s) 78, 113, 119, 302, 356
BspANI GGCC 1 cut(s) 459
BspLI GGNNCC 2 cut(s) 7, 222
BspMI ACCTGC 1 cut(s) 646
BsrDI GCAATG 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 358
BsrGI TGTACA 1 cut(s) 240
BssAI RCCGGY 1 cut(s) 358
BssECI CCNNGG 2 cut(s) 20, 460
BstAUI TGTACA 1 cut(s) 240
BstEII GGTNACC 1 cut(s) 468
BstF5I GGATG 4 cut(s) 122, 290, 375, 520
BstMAI GTCTC 2 cut(s) 252, 687
BstMWI GCNNNNNNNGC 2 cut(s) 118, 193
BstPI GGTNACC 1 cut(s) 468
BstSLI GKGCMC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 459
BtgZI GCGATG 2 cut(s) 468, 612
BtsCI GGATG 4 cut(s) 122, 290, 375, 520
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 2 cut(s) 387, 733
BveI ACCTGC 1 cut(s) 646
Cfr10I RCCGGY 1 cut(s) 358
Csp6I GTAC 1 cut(s) 241
CviJI RGCY 6 cut(s) 19, 94, 169, 221, 459, 716
CviKI_1 RGCY 6 cut(s) 19, 94, 169, 221, 459, 716
CviQI GTAC 1 cut(s) 241
Eco91I GGTNACC 1 cut(s) 468
EcoO65I GGTNACC 1 cut(s) 468
FaqI GGGAC 1 cut(s) 164
Fnu4HI GCNGC 2 cut(s) 78, 113
FokI GGATG 4 cut(s) 109, 277, 382, 507
Fsp4HI GCNGC 2 cut(s) 78, 113
GluI GCNGC 2 cut(s) 78, 113
HaeIII GGCC 1 cut(s) 459
HapII CCGG 2 cut(s) 359, 456
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 1 cut(s) 373
HpaII CCGG 2 cut(s) 359, 456
HphI GGTGA 9 cut(s) 222, 291, 339, 419, 462, 483, 531, 573, 627
Hpy166II GTNNAC 1 cut(s) 241
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 594
HpyCH4V TGCA 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 193
LmnI GCTCC 2 cut(s) 226, 721
LpnPI CCDG 7 cut(s) 20, 177, 195, 362, 372, 469, 651
MaeIII GTNAC 1 cut(s) 468
MboII GAAGA 1 cut(s) 460
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 2 cut(s) 151, 438
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 2 cut(s) 359, 456
Mva1269I GAATGC 2 cut(s) 50, 187
MwoI GCNNNNNNNGC 2 cut(s) 118, 193
NlaIV GGNNCC 2 cut(s) 7, 222
NmeAIII GCCGAG 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 468
PaqCI CACCTGC 1 cut(s) 646
PctI GAATGC 2 cut(s) 50, 187
PfeI GAWTC 1 cut(s) 373
PkrI GCNGC 2 cut(s) 79, 114
PsiI TTATAA 2 cut(s) 216, 321
PspEI GGTNACC 1 cut(s) 468
PspN4I GGNNCC 2 cut(s) 7, 222
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SatI GCNGC 2 cut(s) 78, 113
SduI GDGCHC 1 cut(s) 198
Sse9I AATT 2 cut(s) 151, 438
SsiI CCGC 5 cut(s) 78, 113, 119, 302, 356
SspI AATATT 1 cut(s) 701
TasI AATT 2 cut(s) 151, 438
TatI WGTACW 1 cut(s) 240
TauI GCSGC 2 cut(s) 80, 115
TfiI GAWTC 1 cut(s) 373
TscAI CASTG 1 cut(s) 387
TseFI GTSAC 1 cut(s) 468
Tsp45I GTSAC 1 cut(s) 468
TspDTI ATGAA 1 cut(s) 386
TspRI CASTG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.