Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001631.1

Orthogroup ID

OG0014701

Physical Location & Seq

Genomic Coordinates Forward (+)

17962 .. 19941

Gene Structure 1980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001631.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1980 bp

atggccaatctttggcctagcctgctttatgccatggcaatagtcttgatagccaccagtgtagcagctagttatgagaaaacatatatttatgcatccccaccaccaccatcatcatataaacacaagtccccgccatcgtattactataagtcaccaccgccaccatcttataattacaagtcagcaccatcatatcattacaagtcatcaccgccaccatcttataaacacaagtcaccaccaccttatcactataagtcaccacctcctccatcttataaacacaagtcaccaccaccttatcactataagtcaccacctcctccatcctataaacacaagtcatcaccatcatatcgttacaagtcaccaccaccaccccatcattacaagtcaccaaaatatcactacaagtccccacctcctccttatgtctacaagtcacctccacctccctctccatctccaccccctccatatatttataagtcacctcctccaccgtctccatcacctcctcctccttatgtgtacaagtcaccaccgcctccttctccctccccacctccgccatacatctataaatcaccaccacctccctctccatctcctcctccaccatacctttacaagtcacctcctccaccatctccatctccacctcctccttacatttataaatccccgccacctccatcccggtcacctcctccaccatacatttacaagtcacccccaccaccttctccatcacctccccctccttatatttataagtcaccacctccaccgtctccaccacctccaccaccttacatatacaagtcaccaccaccaccatctccatcaccacctcctccatacctttataaatccccgccacctccctcgcccgcacctcgtccaccatacatttacaagtcccctccccccccatacatttacaagtcaccacctccaccaccttacatatacaagtcaccaccaccaccatctccatcaccacctcctccatacctttataaatcaccgccacctccctcaccatctcctcctccaccatacatttacaagtcacctccacccccatctccatctccacctccgccttacatctataaatcaccaccaccaccctctccatcgcctccaccaccttacatttataagtcaccaccaccaccctcgcccgcacctcgtccaccatacatttacaagtcacccccaccaccttctccatctcctccccctccttacatttacaagtcaccgcctcccccgtcctcatcgcctccaccaccttacatttacaaatcaccaccccctccacagtcaccatcacctccaccaccatacatttacaagtcacccccaccaccttctccatctcctccccctccttacatttacaagtcaccgcctcccccgtcctcatcgcctccaccaccttacatttacaaatcaccaccatctccctcacctacccctccttatgtctacaagtcgccaccgccaccttctccatcaccaccccctccttacatttacaagtcaccgcctcccccgtcctcatcgcctccaccaccttacatttacaaatcaccaccacctccacagtcaccatcacctccaccaccatacatttacaagtcacctcctccaccatctccatcacctacccctccttatgtctacaagtcgccaccgccaccttctccatcaccaccccctccttacatttataaatcaccaccaccaccctcaaggtcacctctcccaccttatctttacaagtcaccaccacctccatctccatcacctcctcctccctacatttataagtcgccaccacccccatctctatcctcactacctggctacatctacaaatctccacctccaccacctatccattatgttaagaagtcaccacattcaacatctaccccacccccgccatcaactgttcattactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Extensin_2

Protein Analysis

659

Amino Acids

71.82

Weight (kDa)

9.8

Isoelectric Point (pI)

163.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014701)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29310 FvH4_4g11720
prunus_persica	Prupe.4G245200_v2.0.a1 Prupe.4G245600_v2.0.a1
rosa_laevigata	RLG00000034892
rosa_multiflora	Rmu_co8370591.1_g000001 Rmu_sc0001631.1_g000005
rosa_roxburghii	Rroxscaffold_1G00026900 Rroxscaffold_5G00353330
rosa_rugosa	Rorug04G0088600 Rorug05G0280800 Rorug05G0280900
rosa_samantha	Rh4BG150300 Rh4CG161100 Rh4DG146000
rosa_wichuraiana	Rw4G012560 Rw5G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	12
AccI	GTMKAC	3 cut(s)	438, 1500, 1695
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	536
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	1941
AjnI	CCWGG	1 cut(s)	1876
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw26I	GTCTC	2 cut(s)	513, 801
AoxI	GGCC	2 cut(s)	3, 14
ApeKI	GCWGC	1 cut(s)	65
AsuC2I	CCSGG	1 cut(s)	703
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	1878
BcnI	CCSGG	1 cut(s)	703
BcoDI	GTCTC	2 cut(s)	513, 801
BfaI	CTAG	2 cut(s)	18, 69
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	2 cut(s)	703, 1878
BmrFI	CCNGG	2 cut(s)	703, 1878
BmsI	GCATC	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	1750
BpuMI	CCSGG	1 cut(s)	703
BsaJI	CCNNGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse1I	ACTGG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	1878
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	3 cut(s)	95, 329, 698
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	77
BshFI	GGCC	2 cut(s)	5, 16
BsiSI	CCGG	1 cut(s)	703
BslFI	GGGAC	3 cut(s)	115, 403, 910
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmAI	GTCTC	2 cut(s)	513, 801
BsmBI	CGTCTC	2 cut(s)	513, 801
BsmFI	GGGAC	3 cut(s)	115, 403, 910
BsnI	GGCC	2 cut(s)	5, 16
Bsp1407I	TGTACA	1 cut(s)	534
Bsp19I	CCATGG	1 cut(s)	33
BspANI	GGCC	2 cut(s)	5, 16
BsrGI	TGTACA	1 cut(s)	534
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	1878
Bst4CI	ACNGT	5 cut(s)	507, 795, 1335, 1620, 1969
BstAUI	TGTACA	1 cut(s)	534
BstC8I	GCNNGC	3 cut(s)	23, 897, 1194
BstDSI	CCRYGG	1 cut(s)	33
BstEII	GGTNACC	2 cut(s)	705, 1770
BstF5I	GGATG	3 cut(s)	95, 329, 698
BstMAI	GTCTC	2 cut(s)	513, 801
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNI	CCWGG	1 cut(s)	1878
BstPI	GGTNACC	2 cut(s)	705, 1770
BstSCI	CCNGG	2 cut(s)	701, 1876
BstV1I	GCAGC	1 cut(s)	77
BsuRI	GGCC	2 cut(s)	5, 16
BtgI	CCRYGG	1 cut(s)	33
BtgZI	GCGATG	4 cut(s)	1131, 1275, 1422, 1560
BtsCI	GGATG	3 cut(s)	95, 329, 698
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	3 cut(s)	23, 897, 1194
Csp6I	GTAC	1 cut(s)	535
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	6 cut(s)	5, 16, 21, 53, 68, 1881
CviKI_1	RGCY	6 cut(s)	5, 16, 21, 53, 68, 1881
CviQI	GTAC	1 cut(s)	535
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	2 cut(s)	561, 1098
Eco130I	CCWWGG	1 cut(s)	33
Eco91I	GGTNACC	2 cut(s)	705, 1770
EcoO65I	GGTNACC	2 cut(s)	705, 1770
EcoRII	CCWGG	1 cut(s)	1876
EcoT14I	CCWWGG	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	33
Esp3I	CGTCTC	2 cut(s)	513, 801
FaeI	CATG	1 cut(s)	37
FaqI	GGGAC	3 cut(s)	115, 403, 910
FatI	CATG	1 cut(s)	33
FauI	CCCGC	6 cut(s)	141, 696, 888, 904, 1201, 1965
FblI	GTMKAC	3 cut(s)	438, 1500, 1695
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	3 cut(s)	82, 316, 685
Fsp4HI	GCNGC	1 cut(s)	66
FspBI	CTAG	2 cut(s)	18, 69
GluI	GCNGC	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	5, 16
HapII	CCGG	1 cut(s)	703
Hin1II	CATG	1 cut(s)	37
HpaII	CCGG	1 cut(s)	703
Hpy166II	GTNNAC	6 cut(s)	439, 535, 908, 1205, 1501, 1696
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	6 cut(s)	439, 535, 908, 1205, 1501, 1696
HpyAV	CCTTC	6 cut(s)	564, 756, 1245, 1392, 1530, 1725
HpyCH4III	ACNGT	5 cut(s)	507, 795, 1335, 1620, 1969
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
Hsp92II	CATG	1 cut(s)	37
LpnPI	CCDG	5 cut(s)	35, 70, 716, 1863, 1890
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	1 cut(s)	104
MaeI	CTAG	2 cut(s)	18, 69
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	175
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	97
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	1923
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	703
MspR9I	CCNGG	2 cut(s)	703, 1878
MvaI	CCWGG	1 cut(s)	1878
MwoI	GCNNNNNNNGC	1 cut(s)	22
NciI	CCSGG	1 cut(s)	703
NcoI	CCATGG	1 cut(s)	33
NlaIII	CATG	1 cut(s)	37
NsiI	ATGCAT	1 cut(s)	97
PflMI	CCANNNNNTGG	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	1876
PspEI	GGTNACC	2 cut(s)	705, 1770
PspGI	CCWGG	1 cut(s)	1876
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
SaqAI	TTAA	1 cut(s)	1923
SatI	GCNGC	1 cut(s)	66
ScrFI	CCNGG	2 cut(s)	703, 1878
SfaNI	GCATC	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	1765
SmoI	CTYRAG	1 cut(s)	1765
Sse9I	AATT	1 cut(s)	175
SspMI	CTAG	2 cut(s)	18, 69
StyD4I	CCNGG	2 cut(s)	701, 1876
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	5 cut(s)	507, 795, 1335, 1620, 1969
TasI	AATT	1 cut(s)	175
TatI	WGTACW	1 cut(s)	534
Tru1I	TTAA	1 cut(s)	1923
Tru9I	TTAA	1 cut(s)	1923
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	1 cut(s)	65
TspDTI	ATGAA	1 cut(s)	1961
TspRI	CASTG	1 cut(s)	64
Van91I	CCANNNNNTGG	1 cut(s)	12
XmiI	GTMKAC	3 cut(s)	438, 1500, 1695
XspI	CTAG	2 cut(s)	18, 69
Zsp2I	ATGCAT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.