Rh4BG150300

Extensin-like region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0014701
Physical Location & Seq
Forward (+)
26874857 .. 26876455
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG150300.1

Sequence Viewer

Length: 1599 bp
ATGGCCAATCTTTGGCCTAGCCTGCTTTATGCCTTGGCAATAGCCTTGATAGCCACCAGTGTAGCAGCTAGTTATGAGAAAACATATATTTATGCATCCCCACCACCACCATCATATAAACACAAGTCCCCGCCATCGTATTACTATAAGTCACCACCGCCACCATCTTATAAACACAAGTCATCACCATCATATCATTACAAGTCACCACCGCCACCATCTTATAAACACAAGTCACCACCACCTTATCACTATAAGTCACCACCTCCTCCATCTTATAAACACAAGTCACCACCACCTTATCACTATAAGTCACCACCTCCTCCATCCTATAAACACAAGTCACCAAAATATTACTACAACTCCCCACCTCCTCCTTATGTCTACAAGTCACCTCCACCTCCCTCTCCATCTCCACCCCCTCCATATATTTATAAATCACCTCCTCCACCGTCTCCATCACCTCCTCCTCCTTATGTGTACAAGTCACCACCTCCTTCTCCCTCCCCACCTCCGCCATACATCTATAAATCACCACCACCTCCCTCTCCATCTCCTCCTCCACCATACAATTACAAGTCACCTCCTCCACCATCTCCATCTCCACCTCCTCCTTACATTTATAAATCCCCGCCACCTCCATCCTGGTCACCTCCTCCACCATACATTTACAAGTCACCCCCACCACCTTCTCCATCACCTCCCCCTCCTTACATTTACAAGTCACCACCTCCCCCGTCTCCATTGCCTCCACCACCTTACATATACAAGTCACCACCACCACCATCTCCATCACCACCTCCTCCTTACCTTTATAAATCACCGCCACCACCTTCACCATCTCCTCCTCCACCATACATTTACAAGTCACCTCCACCCCCATCTCCACCTCCACCTCCACCTTACATCTATAAATCACCACCACCACCCTATCCATCGCCTCCACCACCTTACATTTACAAGTCACCCCCACCACCTTCTCCATCACCTTCCCCTCCTTACATTTACAAGTCACCTCCTCCCCCGTCTCCATCGCCTCCACCACCTTACTTATACAAGTCACCACCACCACCATCTCCATCACCACCTCCTCCTTACCTTTATAAATCACCGCCACCTCCCTCACCATCTCCTCCTCCACCATACATTTACAAGTCACCTCCATCCCCATCTCCATCTCCACCTCCGCCTTACATCTATAAATCACCACCACCACCCTCTCCATCGCCTCCACCACCTTACATTTATAAGTCACCACCACCACCCTCGCCCTCACCTCCTCCACCATACATTTACAAGTCACCCCCACCACCTTCTCCATCACCTCCCCCTCCTTACATTTACAAGTCACCACCTCCCCCGTCCTCATCACCTCCACCACCACCTCCATCTCCATCGCCACCTCCTCCTTACATTTATAAATCACCACCTCCACAGTCACCATCATCTCCACCACCATACATTTACAAGTCACCTCCTCCACCATCTCCATCACCTACCTCTCCTTATGTCTACAAGTCGCCACCGCCACCATCTCCATCGCCACCCCCTCCTTACATTTATAAATCACCACCGCCACCCTCAAGGTCACCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Extensin_2

Protein Analysis

532

Amino Acids

57.7

Weight (kDa)

9.74

Isoelectric Point (pI)

172.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Extensin_2 PF04554 101 - 151 5.4e-06 Extensin-like region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 12
AccI GTMKAC 2 cut(s) 384, 1512
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 1 cut(s) 12
AjnI CCWGG 1 cut(s) 644
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw26I GTCTC 3 cut(s) 459, 744, 1032
AoxI GGCC 2 cut(s) 3, 14
ApeKI GCWGC 1 cut(s) 65
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 646
BcoDI GTCTC 3 cut(s) 459, 744, 1032
BfaI CTAG 2 cut(s) 18, 69
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme1390I CCNGG 1 cut(s) 646
BmrFI CCNGG 1 cut(s) 646
BmsI GCATC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 1567
BsaJI CCNNGG 1 cut(s) 33
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse1I ACTGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 743
BseBI CCWGG 1 cut(s) 646
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 4 cut(s) 95, 326, 641, 1163
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMI GCAATG 1 cut(s) 743
BseNI ACTGG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 77
BshFI GGCC 2 cut(s) 5, 16
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 3 cut(s) 459, 744, 1032
BsmBI CGTCTC 3 cut(s) 459, 744, 1032
BsmFI GGGAC 1 cut(s) 112
BsnI GGCC 2 cut(s) 5, 16
Bsp1407I TGTACA 1 cut(s) 480
BspANI GGCC 2 cut(s) 5, 16
BsrDI GCAATG 1 cut(s) 743
BsrGI TGTACA 1 cut(s) 480
BsrI ACTGG 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 646
Bst4CI ACNGT 2 cut(s) 453, 1437
BstAUI TGTACA 1 cut(s) 480
BstC8I GCNNGC 1 cut(s) 23
BstEII GGTNACC 2 cut(s) 648, 1587
BstF5I GGATG 4 cut(s) 95, 326, 641, 1163
BstMAI GTCTC 3 cut(s) 459, 744, 1032
BstMWI GCNNNNNNNGC 2 cut(s) 22, 50
BstNI CCWGG 1 cut(s) 646
BstPI GGTNACC 2 cut(s) 648, 1587
BstSCI CCNGG 1 cut(s) 644
BstV1I GCAGC 1 cut(s) 77
BsuRI GGCC 2 cut(s) 5, 16
BtgZI GCGATG 5 cut(s) 921, 1017, 1209, 1380, 1524
BtsCI GGATG 4 cut(s) 95, 326, 641, 1163
BtsIMutI CAGTG 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 481
CviAII CATG 1 cut(s) 1596
CviJI RGCY 6 cut(s) 5, 16, 21, 44, 53, 68
CviKI_1 RGCY 6 cut(s) 5, 16, 21, 44, 53, 68
CviQI GTAC 1 cut(s) 481
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 2 cut(s) 504, 1176
Eco130I CCWWGG 1 cut(s) 33
Eco91I GGTNACC 2 cut(s) 648, 1587
EcoO65I GGTNACC 2 cut(s) 648, 1587
EcoRII CCWGG 1 cut(s) 644
EcoT14I CCWWGG 1 cut(s) 33
EcoT22I ATGCAT 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 33
Esp3I CGTCTC 3 cut(s) 459, 744, 1032
FaeI CATG 1 cut(s) 1599
FaqI GGGAC 1 cut(s) 112
FatI CATG 1 cut(s) 1595
FauI CCCGC 2 cut(s) 138, 639
FblI GTMKAC 2 cut(s) 384, 1512
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 4 cut(s) 82, 313, 628, 1150
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 2 cut(s) 18, 69
GluI GCNGC 1 cut(s) 66
HaeIII GGCC 2 cut(s) 5, 16
Hin1II CATG 1 cut(s) 1599
Hpy166II GTNNAC 3 cut(s) 385, 481, 1513
Hpy8I GTNNAC 3 cut(s) 385, 481, 1513
HpyAV CCTTC 6 cut(s) 507, 699, 843, 987, 999, 1323
HpyCH4III ACNGT 2 cut(s) 453, 1437
HpyCH4V TGCA 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 50
Hsp92II CATG 1 cut(s) 1599
LpnPI CCDG 4 cut(s) 35, 70, 631, 658
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 1 cut(s) 104
MaeI CTAG 2 cut(s) 18, 69
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 571
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 97
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 1594
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 646
MvaI CCWGG 1 cut(s) 646
MwoI GCNNNNNNNGC 2 cut(s) 22, 50
NlaIII CATG 1 cut(s) 1599
NsiI ATGCAT 1 cut(s) 97
PflMI CCANNNNNTGG 1 cut(s) 12
PkrI GCNGC 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 644
PspEI GGTNACC 2 cut(s) 648, 1587
PspGI CCWGG 1 cut(s) 644
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
RseI CAYNNNNRTG 1 cut(s) 1594
SatI GCNGC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 646
SfaNI GCATC 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 1594
SmlI CTYRAG 1 cut(s) 1582
SmoI CTYRAG 1 cut(s) 1582
Sse9I AATT 1 cut(s) 571
SspI AATATT 1 cut(s) 353
SspMI CTAG 2 cut(s) 18, 69
StyD4I CCNGG 1 cut(s) 644
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 2 cut(s) 453, 1437
TasI AATT 1 cut(s) 571
TatI WGTACW 1 cut(s) 480
TscAI CASTG 1 cut(s) 64
TseI GCWGC 1 cut(s) 65
TspRI CASTG 1 cut(s) 64
Van91I CCANNNNNTGG 1 cut(s) 12
XcmI CCANNNNNNNNNTGG 1 cut(s) 642
XmiI GTMKAC 2 cut(s) 384, 1512
XspI CTAG 2 cut(s) 18, 69
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.