Prupe.4G245600_v2.0.a1

Extensin-2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014701
Physical Location & Seq
Reverse (-)
16291623 .. 16292773
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G245600.1

Sequence Viewer

Length: 309 bp
ATGGCCAATCTTTGGCCAAGCCTGGTTTTTGCCTTGGCTATATGCTTCATAGCCACCAATGTAGCAGCTAGTGATGACAAGCCTTACGCTTATTCATCTCCTCCACCACCATCACGCCGCCACCATCTCCTTCACCTCGTAAACCATATGATTACGCGTCTCCTCCACCACCCACTCATTACTAAACAAGTTGAATTTCTCTTCTCTTCATGTTATAGATTGGTAAAACAAATCATTGCTGCAAGAGAGAGTTTTACCCTGGTGGCTTCTATGCATCTGATCAAAATGCGCGCCCTGAAAACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Extensin_2

Protein Analysis

103

Amino Acids

11.58

Weight (kDa)

10.02

Isoelectric Point (pI)

52.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 12
AccII CGCG 2 cut(s) 157, 291
AciI CCGC 1 cut(s) 118
AcoI YGGCCR 2 cut(s) 3, 14
AcsI RAATTY 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 12
AflIII ACRYGT 1 cut(s) 155
AgsI TTSAA 1 cut(s) 194
AjnI CCWGG 2 cut(s) 21, 258
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 164
AoxI GGCC 2 cut(s) 3, 14
ApeKI GCWGC 2 cut(s) 65, 239
ApoI RAATTY 1 cut(s) 194
AspLEI GCGC 2 cut(s) 291, 293
AsuHPI GGTGA 1 cut(s) 125
BalI TGGCCA 2 cut(s) 5, 16
BbvI GCAGC 2 cut(s) 77, 226
BccI CCATC 2 cut(s) 118, 132
BciT130I CCWGG 2 cut(s) 23, 260
BclI TGATCA 1 cut(s) 279
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 1 cut(s) 69
BisI GCNGC 3 cut(s) 66, 118, 240
BlsI GCNGC 3 cut(s) 67, 119, 241
Bme1390I CCNGG 2 cut(s) 23, 260
BmrFI CCNGG 2 cut(s) 23, 260
BmsI GCATC 1 cut(s) 283
BsaJI CCNNGG 2 cut(s) 33, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse3DI GCAATG 1 cut(s) 234
BseBI CCWGG 2 cut(s) 23, 260
BseDI CCNNGG 2 cut(s) 33, 258
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMI GCAATG 1 cut(s) 234
BsePI GCGCGC 1 cut(s) 289
BseRI GAGGAG 2 cut(s) 90, 152
BseXI GCAGC 2 cut(s) 77, 226
Bsh1236I CGCG 2 cut(s) 157, 291
BshFI GGCC 2 cut(s) 5, 16
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 164
BsmBI CGTCTC 1 cut(s) 164
BsnI GGCC 2 cut(s) 5, 16
Bsp143I GATC 1 cut(s) 279
BspACI CCGC 1 cut(s) 118
BspANI GGCC 2 cut(s) 5, 16
BspFNI CGCG 2 cut(s) 157, 291
BsrDI GCAATG 1 cut(s) 234
BssECI CCNNGG 2 cut(s) 33, 258
BssHII GCGCGC 1 cut(s) 289
BssMI GATC 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 33
Bst2UI CCWGG 2 cut(s) 23, 260
Bst6I CTCTTC 2 cut(s) 206, 211
BstC8I GCNNGC 1 cut(s) 291
BstFNI CGCG 2 cut(s) 157, 291
BstHHI GCGC 2 cut(s) 291, 293
BstKTI GATC 1 cut(s) 282
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 1 cut(s) 279
BstNI CCWGG 2 cut(s) 23, 260
BstSCI CCNGG 2 cut(s) 21, 258
BstUI CGCG 2 cut(s) 157, 291
BstV1I GCAGC 2 cut(s) 77, 226
BsuRI GGCC 2 cut(s) 5, 16
Cac8I GCNNGC 1 cut(s) 291
CfoI GCGC 2 cut(s) 291, 293
CseI GACGC 1 cut(s) 146
CviAII CATG 1 cut(s) 210
CviJI RGCY 8 cut(s) 5, 16, 21, 38, 53, 68, 82, 266
CviKI_1 RGCY 8 cut(s) 5, 16, 21, 38, 53, 68, 82, 266
DpnI GATC 1 cut(s) 281
DpnII GATC 1 cut(s) 279
EaeI YGGCCR 2 cut(s) 3, 14
Eam1104I CTCTTC 2 cut(s) 206, 211
EarI CTCTTC 2 cut(s) 206, 211
Eco130I CCWWGG 1 cut(s) 33
EcoRII CCWGG 2 cut(s) 21, 258
EcoT14I CCWWGG 1 cut(s) 33
EcoT22I ATGCAT 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 33
Esp3I CGTCTC 1 cut(s) 164
FaeI CATG 1 cut(s) 213
FaiI YATR 8 cut(s) 41, 43, 50, 147, 149, 211, 216, 272
FatI CATG 1 cut(s) 209
FauNDI CATATG 1 cut(s) 147
FbaI TGATCA 1 cut(s) 279
Fnu4HI GCNGC 3 cut(s) 66, 118, 240
Fsp4HI GCNGC 3 cut(s) 66, 118, 240
FspBI CTAG 1 cut(s) 69
GlaI GCGC 2 cut(s) 290, 292
GluI GCNGC 3 cut(s) 66, 118, 240
HaeIII GGCC 2 cut(s) 5, 16
HgaI GACGC 1 cut(s) 146
HhaI GCGC 2 cut(s) 291, 293
Hin1II CATG 1 cut(s) 213
Hin6I GCGC 2 cut(s) 289, 291
HinP1I GCGC 2 cut(s) 289, 291
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 279
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 140
HpyCH4V TGCA 2 cut(s) 242, 274
Hsp92II CATG 1 cut(s) 213
HspAI GCGC 2 cut(s) 289, 291
Ksp22I TGATCA 1 cut(s) 279
Kzo9I GATC 1 cut(s) 279
LpnPI CCDG 4 cut(s) 8, 35, 245, 272
Lsp1109I GCAGC 2 cut(s) 77, 226
LweI GCATC 1 cut(s) 283
MaeI CTAG 1 cut(s) 69
MalI GATC 1 cut(s) 281
MboI GATC 1 cut(s) 279
MboII GAAGA 2 cut(s) 193, 198
MlsI TGGCCA 2 cut(s) 5, 16
MluCI AATT 1 cut(s) 194
MluI ACGCGT 1 cut(s) 155
MluNI TGGCCA 2 cut(s) 5, 16
MnlI CCTC 3 cut(s) 111, 146, 173
Mox20I TGGCCA 2 cut(s) 5, 16
Mph1103I ATGCAT 1 cut(s) 276
MscI TGGCCA 2 cut(s) 5, 16
Msp20I TGGCCA 2 cut(s) 5, 16
MspR9I CCNGG 2 cut(s) 23, 260
MvaI CCWGG 2 cut(s) 23, 260
MvnI CGCG 2 cut(s) 157, 291
NdeI CATATG 1 cut(s) 147
NdeII GATC 1 cut(s) 279
NlaIII CATG 1 cut(s) 213
NsiI ATGCAT 1 cut(s) 276
PauI GCGCGC 1 cut(s) 289
PflMI CCANNNNNTGG 1 cut(s) 12
PkrI GCNGC 3 cut(s) 67, 119, 241
Psp6I CCWGG 2 cut(s) 21, 258
PspGI CCWGG 2 cut(s) 21, 258
PteI GCGCGC 1 cut(s) 289
SatI GCNGC 3 cut(s) 66, 118, 240
Sau3AI GATC 1 cut(s) 279
ScrFI CCNGG 2 cut(s) 23, 260
SetI ASST 2 cut(s) 70, 138
SfaNI GCATC 1 cut(s) 283
Sse9I AATT 1 cut(s) 194
SsiI CCGC 1 cut(s) 118
SspMI CTAG 1 cut(s) 69
StyD4I CCNGG 2 cut(s) 21, 258
StyI CCWWGG 1 cut(s) 33
TasI AATT 1 cut(s) 194
TauI GCSGC 1 cut(s) 120
TseI GCWGC 2 cut(s) 65, 239
TspDTI ATGAA 3 cut(s) 37, 84, 198
Van91I CCANNNNNTGG 1 cut(s) 12
XapI RAATTY 1 cut(s) 194
XspI CTAG 1 cut(s) 69
Zsp2I ATGCAT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.