Rw4G012560

Extensin-like region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0014701
Physical Location & Seq
Forward (+)
29554449 .. 29556245
1797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G012560.1

Sequence Viewer

Length: 1191 bp
ATGGCCAATCTTTGGCCTAGCCTGCTTTATGCCGTGGCAATAGTCTTGATAGCCACCAGTGTAGCAGCTAGTTATGAGAAAACATATATTTATGCATCCCCACCACCACCATCATATAAACACAAGTCCCCGCCATCGTATAACTATAAGTCACCACCTCCCCCGTCTCCATCGCCTCCACCACCTTACATATACAAGTCACCACCACCACCATCTCCGTCACCACCTCCTCCTTACCTTTATAAATCACCGCCACCTCCCTCACCATCTCTATCTCCACCTCCGCCTTACATCTATAAGTCACCACCACCACCCTCTCCATCGCCTCCACCACCTTACATTTACAAGTCACCACCACCATCCTCGCCCCCACCTCCTCCACCATACATTTACAAGTCACCCCCACCACCTTCTCCATCACCTCCCCCTCCTTATATTTACAAGTCACCTCCTCCCCCCTCTCCATCGCCTCCACCACCTTACATATACAAGTCACCACCACCACCATCTCCATCACCACCTCCTCCTTACCTTTATAAATCACCGCCACCTCCTTCACCATCTCCTCCTCCACCATACATTTACAAGTCACCTCCACCCCCATCTCCATCTCCACCTCCGCCTTACATCCATAAATCACCACCGCCACCCTCTCCATCGCCTCCACCACCTTACATTTATAAGTCACCACCACCACCCTCGCCCTCACCCCGTCCACCATACATTTACAAGTCACCCCCACCACCTTCTCCATCTCCTCCCCCTCCTTACATTTACAAGTCACCGCCTCCCCTGTCCTCATCGCCTCCACCACCTTACATTTACAAATCACCACCACCTCCACAGTCACCATCACCTCCACCACCATACATTTACAAGTCACCTCCTCCACCGTCTCGATCACCTACCCCTCCTTATGTCTACAAGTCGCCACCACCACCCCCTCCTTACATTTATAAATCACCACCACCACCCTCAAGGTCACCTCTCCCACCTTATCTTTACAAATCACCACCACCTCCATCTCCATCACCTCCTCCTCCCTACATTTATAAGTCACCACCACCCCCATCTCTATCCTCACTACCTGGCTACATCTACAAATCTCCACCTCCACCACATATCCGTTATGTTAAGAAGTCACCACATTCAACATCTACCCCACCCCCGCCATCAACTGTTCATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Extensin_2

Protein Analysis

396

Amino Acids

42.7

Weight (kDa)

9.78

Isoelectric Point (pI)

160.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Extensin_2 PF04554 290 - 341 8.7e-07 Extensin-like region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 5 cut(s) 243, 537, 681, 957, 1053
AccB7I CCANNNNNTGG 1 cut(s) 12
AccI GTMKAC 1 cut(s) 921
AciI CCGC 8 cut(s) 131, 251, 284, 545, 620, 644, 785, 1169
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 1 cut(s) 12
AgsI TTSAA 1 cut(s) 1152
AjnI CCWGG 1 cut(s) 1087
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw26I GTCTC 2 cut(s) 171, 900
AoxI GGCC 2 cut(s) 3, 14
ApeKI GCWGC 1 cut(s) 65
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 1089
BcoDI GTCTC 2 cut(s) 171, 900
BfaI CTAG 2 cut(s) 18, 69
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme1390I CCNGG 1 cut(s) 1089
BmrFI CCNGG 1 cut(s) 1089
BmsI GCATC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 961
BsaJI CCNNGG 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse1I ACTGG 1 cut(s) 57
BseBI CCWGG 1 cut(s) 1089
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 3 cut(s) 95, 359, 627
BseLI CCNNNNNNNGG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 77
BshFI GGCC 2 cut(s) 5, 16
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 2 cut(s) 171, 900
BsmBI CGTCTC 2 cut(s) 171, 900
BsmFI GGGAC 1 cut(s) 112
BsnI GGCC 2 cut(s) 5, 16
Bsp143I GATC 1 cut(s) 899
BspACI CCGC 8 cut(s) 131, 251, 284, 545, 620, 644, 785, 1169
BspANI GGCC 2 cut(s) 5, 16
BsrI ACTGG 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 1 cut(s) 899
Bst2UI CCWGG 1 cut(s) 1089
Bst4CI ACNGT 3 cut(s) 846, 894, 1180
BstC8I GCNNGC 1 cut(s) 23
BstDSI CCRYGG 1 cut(s) 33
BstEII GGTNACC 1 cut(s) 981
BstF5I GGATG 3 cut(s) 95, 359, 627
BstKTI GATC 1 cut(s) 902
BstMAI GTCTC 2 cut(s) 171, 900
BstMBI GATC 1 cut(s) 899
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstNI CCWGG 1 cut(s) 1089
BstPI GGTNACC 1 cut(s) 981
BstSCI CCNGG 1 cut(s) 1087
BstV1I GCAGC 1 cut(s) 77
BsuRI GGCC 2 cut(s) 5, 16
BtgI CCRYGG 1 cut(s) 33
BtgZI GCGATG 5 cut(s) 156, 306, 450, 642, 786
BtsCI GGATG 3 cut(s) 95, 359, 627
BtsIMutI CAGTG 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 23
CviJI RGCY 6 cut(s) 5, 16, 21, 53, 68, 1092
CviKI_1 RGCY 6 cut(s) 5, 16, 21, 53, 68, 1092
DpnI GATC 1 cut(s) 901
DpnII GATC 1 cut(s) 899
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 2 cut(s) 273, 609
Eco91I GGTNACC 1 cut(s) 981
EcoO65I GGTNACC 1 cut(s) 981
EcoRII CCWGG 1 cut(s) 1087
EcoT22I ATGCAT 1 cut(s) 97
Esp3I CGTCTC 2 cut(s) 171, 900
FaqI GGGAC 1 cut(s) 112
FauI CCCGC 2 cut(s) 138, 1176
FblI GTMKAC 1 cut(s) 921
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 3 cut(s) 82, 346, 614
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 2 cut(s) 18, 69
GluI GCNGC 1 cut(s) 66
HaeIII GGCC 2 cut(s) 5, 16
Hpy166II GTNNAC 2 cut(s) 716, 922
Hpy188III TCNNGA 2 cut(s) 46, 897
Hpy8I GTNNAC 2 cut(s) 716, 922
HpyAV CCTTC 3 cut(s) 420, 564, 756
HpyCH4III ACNGT 3 cut(s) 846, 894, 1180
HpyCH4V TGCA 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
Kzo9I GATC 1 cut(s) 899
LpnPI CCDG 5 cut(s) 35, 70, 806, 1074, 1101
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 1 cut(s) 104
MaeI CTAG 2 cut(s) 18, 69
MalI GATC 1 cut(s) 901
MboI GATC 1 cut(s) 899
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 97
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 1134
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 1089
MvaI CCWGG 1 cut(s) 1089
MwoI GCNNNNNNNGC 1 cut(s) 22
NdeII GATC 1 cut(s) 899
NsiI ATGCAT 1 cut(s) 97
PflMI CCANNNNNTGG 1 cut(s) 12
PkrI GCNGC 1 cut(s) 67
PsiI TTATAA 5 cut(s) 243, 537, 681, 957, 1053
Psp6I CCWGG 1 cut(s) 1087
PspEI GGTNACC 1 cut(s) 981
PspGI CCWGG 1 cut(s) 1087
SaqAI TTAA 1 cut(s) 1134
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 1 cut(s) 899
ScrFI CCNGG 1 cut(s) 1089
SfaNI GCATC 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 976
SmoI CTYRAG 1 cut(s) 976
SsiI CCGC 8 cut(s) 131, 251, 284, 545, 620, 644, 785, 1169
SspMI CTAG 2 cut(s) 18, 69
StyD4I CCNGG 1 cut(s) 1087
TaaI ACNGT 3 cut(s) 846, 894, 1180
TaqI TCGA 1 cut(s) 898
Tru1I TTAA 1 cut(s) 1134
Tru9I TTAA 1 cut(s) 1134
TscAI CASTG 1 cut(s) 64
TseI GCWGC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 1172
TspGWI ACGGA 2 cut(s) 207, 1115
TspRI CASTG 1 cut(s) 64
Van91I CCANNNNNTGG 1 cut(s) 12
XmiI GTMKAC 1 cut(s) 921
XspI CTAG 2 cut(s) 18, 69
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.