Rmu_co8370591.1_g000001

Extensin-2-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8370591.1
Physical Location & Seq
Forward (+)
669 .. 1121
453 bp
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UTR
Exon/CDS
Intron
Rmu_co8370591.1_g000001.1.cds

Sequence Viewer

Length: 453 bp
atggccagtctatggccaagcctgctgtatgcattggctatatgctttatagccaccagtgttgctgctgatggtgatgataaaccttatgtttatgcatctccacctccaccaccctcttatcactacaagtctccaccaccttaccagtccaagtcacctccgtactactacaagtcccctcctccaccttcaccatcacctcctcctccacgatatgtgtataagtcgcctcctccaccgtatgcttacaagtcacctccaccaccatctccatcacctcctcctccttatgtatacaagtcaccaccaccaccttctccatccccacctccaccttacatatataaatcaccgccaccaccatcaccatcacctcctccaccatacatgtacaagtcaccaccaccaccatctccttcacctcctccaccttatgtctacaagtcacca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

151

Amino Acids

16.4

Weight (kDa)

9.41

Isoelectric Point (pI)

149.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 12
AccI GTMKAC 2 cut(s) 297, 441
AciI CCGC 1 cut(s) 356
AcoI YGGCCR 2 cut(s) 3, 14
AfaI GTAC 2 cut(s) 167, 395
AfiI CCNNNNNNNGG 1 cut(s) 12
AflIII ACRYGT 1 cut(s) 390
Alw26I GTCTC 1 cut(s) 138
AoxI GGCC 2 cut(s) 3, 14
ApeKI GCWGC 1 cut(s) 65
BalI TGGCCA 2 cut(s) 5, 16
BbvI GCAGC 1 cut(s) 52
BccI CCATC 8 cut(s) 65, 205, 277, 283, 331, 373, 379, 421
BcoDI GTCTC 1 cut(s) 138
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
BmsI GCATC 1 cut(s) 107
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse1I ACTGG 3 cut(s) 6, 57, 148
BseGI GGATG 1 cut(s) 323
BseLI CCNNNNNNNGG 1 cut(s) 12
BseNI ACTGG 3 cut(s) 6, 57, 148
BseRI GAGGAG 8 cut(s) 174, 195, 198, 225, 273, 276, 369, 417
BseXI GCAGC 1 cut(s) 52
BshFI GGCC 2 cut(s) 5, 16
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 2 cut(s) 5, 16
Bsp1407I TGTACA 1 cut(s) 393
BspACI CCGC 1 cut(s) 356
BspANI GGCC 2 cut(s) 5, 16
BsrGI TGTACA 1 cut(s) 393
BsrI ACTGG 3 cut(s) 6, 57, 148
BssNAI GTATAC 1 cut(s) 298
Bst1107I GTATAC 1 cut(s) 298
Bst4CI ACNGT 1 cut(s) 243
BstAUI TGTACA 1 cut(s) 393
BstC8I GCNNGC 1 cut(s) 23
BstF5I GGATG 1 cut(s) 323
BstMAI GTCTC 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstNSI RCATGY 1 cut(s) 394
BstV1I GCAGC 1 cut(s) 52
BstZ17I GTATAC 1 cut(s) 298
BsuRI GGCC 2 cut(s) 5, 16
BtsCI GGATG 1 cut(s) 323
BtsIMutI CAGTG 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 23
Csp6I GTAC 2 cut(s) 166, 394
CspCI CAANNNNNGTGG 2 cut(s) 43, 78
CviAII CATG 1 cut(s) 391
CviJI RGCY 5 cut(s) 5, 16, 21, 38, 53
CviKI_1 RGCY 5 cut(s) 5, 16, 21, 38, 53
CviQI GTAC 2 cut(s) 166, 394
EaeI YGGCCR 2 cut(s) 3, 14
EcoT22I ATGCAT 2 cut(s) 34, 100
FaeI CATG 1 cut(s) 394
FaqI GGGAC 1 cut(s) 163
FatI CATG 1 cut(s) 390
FblI GTMKAC 2 cut(s) 297, 441
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 1 cut(s) 310
Fsp4HI GCNGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 66
HaeIII GGCC 2 cut(s) 5, 16
Hin1II CATG 1 cut(s) 394
Hpy166II GTNNAC 2 cut(s) 298, 442
Hpy8I GTNNAC 2 cut(s) 298, 442
HpyAV CCTTC 3 cut(s) 201, 327, 429
HpyCH4III ACNGT 1 cut(s) 243
HpyCH4V TGCA 2 cut(s) 32, 98
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
Hsp92II CATG 1 cut(s) 394
LpnPI CCDG 4 cut(s) 19, 35, 70, 161
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 1 cut(s) 107
MaeIII GTNAC 5 cut(s) 156, 255, 303, 399, 447
MlsI TGGCCA 2 cut(s) 5, 16
MluNI TGGCCA 2 cut(s) 5, 16
Mox20I TGGCCA 2 cut(s) 5, 16
Mph1103I ATGCAT 2 cut(s) 34, 100
MscI TGGCCA 2 cut(s) 5, 16
Msp20I TGGCCA 2 cut(s) 5, 16
MwoI GCNNNNNNNGC 1 cut(s) 22
NlaIII CATG 1 cut(s) 394
NmuCI GTSAC 5 cut(s) 156, 255, 303, 399, 447
NsiI ATGCAT 2 cut(s) 34, 100
NspI RCATGY 1 cut(s) 394
PciI ACATGT 1 cut(s) 390
PflMI CCANNNNNTGG 1 cut(s) 12
PkrI GCNGC 1 cut(s) 67
PscI ACATGT 1 cut(s) 390
RsaI GTAC 2 cut(s) 167, 395
RsaNI GTAC 2 cut(s) 166, 394
SatI GCNGC 1 cut(s) 66
SfaNI GCATC 1 cut(s) 107
SsiI CCGC 1 cut(s) 356
TaaI ACNGT 1 cut(s) 243
TatI WGTACW 1 cut(s) 393
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 5 cut(s) 156, 255, 303, 399, 447
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 5 cut(s) 156, 255, 303, 399, 447
TspGWI ACGGA 1 cut(s) 153
TspRI CASTG 1 cut(s) 64
Van91I CCANNNNNTGG 1 cut(s) 12
XceI RCATGY 1 cut(s) 394
XmiI GTMKAC 2 cut(s) 297, 441
Zsp2I ATGCAT 2 cut(s) 34, 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.