Rroxscaffold_5G00353330

Extensin-like region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014701
Physical Location & Seq
Forward (+)
31058083 .. 31059901
1819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00353330.1

Sequence Viewer

Length: 1176 bp
ATGGCCAATCTTTGGCCTAGCCTGCTTTATGCCTTGGCAATAGCCTTGATAGCCACCAATGTAGCAGCTAGTTATGAGAAAACATATATTTTTGCATCCCCACCACCACCATCATATAAACACAAGTCCCCGCCATCGTATTACTATAAGTCACCTCCACCTCCCTCTCCATCTCCTCCCCCTCCATATATTTATAAGTCACCTCCTCCACCGTCTCCATCACCTCCTCCTCCTTATGTGTACAAGTCACCACCACCTCCTTCTCCCTCCCCACCTCCGCCATACATCTATAAATCACCACCACCTCCCTCTCCATCTCCTCCTCCACCATACATTTACAAGTCACCTCCACCCCCATCTCCACCTCCACCTCCGCCTTACATCTATAAATCATCACCACCACCCTATCCATCACCTCCACCACCTTACATTTACAAGTCACCACCACCACCCTCGCCCTCACCTCCTCCACCATACATTTACAAGTCACCCCCACCACCTTCTCCATCACCTCCCCCTCCTTACATTTACAAGTCACCTCCTCCCCCGTCTCCATCACCTCCACCACCTTACATATACAAGTCACCACCACCACTATCTCCATCACCGCCTCCTCCTTACCTTTATAAATCACCGCCACCTCCCTCACCATCTCCTCATCCACCATACATTTACAAGTCACCTCCATCCCCCTCTCCATCTCCACCTCCGCCTTACATCTATAAATCACCACCACCACCCTCTCCATCGCCTCCATCACCTTACATTTATAAGTCACCACCACCGTCCTCGCCCTCACCTCCTCCACCATACATTTACAAGTCACCCCCACCACCTTCTCCATCACCTCTCCCTCCTTACATTTACAAGTTACCACCTCCCCCGTCCTCATCTCCTCCACCACCTTACATTTACAAATCACCACCACCACCCCCTCCTTACATTTATAAATCACCACCGCCACCCTCAAGGTCACCTCCCCCACCTTATCTTTACAAGTCACCACCACCTCCATCTTCATCACCTCCTCCTCCCTACATTTATAAGTCACCACCACCCCCATCTCTATCCTCACTACCTGGCTACATCTACAAATCTCCACCTCCACCACAAATCCGTTATGTTAAGAAGTCACCACATTCAACATCTCTACATCTGCCCCACCCCCACCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Extensin_2

Protein Analysis

391

Amino Acids

42.3

Weight (kDa)

9.72

Isoelectric Point (pI)

155.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Extensin_2 PF04554 287 - 338 4.7e-06 Extensin-like region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 5 cut(s) 195, 627, 771, 948, 1044
AccB7I CCANNNNNTGG 1 cut(s) 12
AciI CCGC 7 cut(s) 131, 278, 374, 608, 635, 710, 959
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 12
AgsI TTSAA 1 cut(s) 1143
AjnI CCWGG 1 cut(s) 1078
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw26I GTCTC 2 cut(s) 219, 555
AoxI GGCC 2 cut(s) 3, 14
ApeKI GCWGC 1 cut(s) 65
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 1080
BcoDI GTCTC 2 cut(s) 219, 555
BfaI CTAG 2 cut(s) 18, 69
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme1390I CCNGG 1 cut(s) 1080
BmrFI CCNGG 1 cut(s) 1080
BmsI GCATC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 952
BsaJI CCNNGG 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 1080
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 3 cut(s) 95, 658, 686
BseLI CCNNNNNNNGG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 77
BshFI GGCC 2 cut(s) 5, 16
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 2 cut(s) 219, 555
BsmBI CGTCTC 2 cut(s) 219, 555
BsmFI GGGAC 1 cut(s) 112
BsnI GGCC 2 cut(s) 5, 16
Bsp1407I TGTACA 1 cut(s) 240
BspACI CCGC 7 cut(s) 131, 278, 374, 608, 635, 710, 959
BspANI GGCC 2 cut(s) 5, 16
BsrGI TGTACA 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 1080
Bst4CI ACNGT 2 cut(s) 213, 786
BstAUI TGTACA 1 cut(s) 240
BstC8I GCNNGC 1 cut(s) 23
BstEII GGTNACC 1 cut(s) 972
BstF5I GGATG 3 cut(s) 95, 658, 686
BstMAI GTCTC 2 cut(s) 219, 555
BstMWI GCNNNNNNNGC 2 cut(s) 22, 50
BstNI CCWGG 1 cut(s) 1080
BstPI GGTNACC 1 cut(s) 972
BstSCI CCNGG 1 cut(s) 1078
BstV1I GCAGC 1 cut(s) 77
BsuRI GGCC 2 cut(s) 5, 16
BtgZI GCGATG 1 cut(s) 732
BtsCI GGATG 3 cut(s) 95, 658, 686
Cac8I GCNNGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 241
CviJI RGCY 7 cut(s) 5, 16, 21, 44, 53, 68, 1083
CviKI_1 RGCY 7 cut(s) 5, 16, 21, 44, 53, 68, 1083
CviQI GTAC 1 cut(s) 241
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 3 cut(s) 267, 363, 699
Eco130I CCWWGG 1 cut(s) 33
Eco91I GGTNACC 1 cut(s) 972
EcoO65I GGTNACC 1 cut(s) 972
EcoRII CCWGG 1 cut(s) 1078
EcoT14I CCWWGG 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 33
Esp3I CGTCTC 2 cut(s) 219, 555
FaqI GGGAC 1 cut(s) 112
FauI CCCGC 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 3 cut(s) 82, 645, 673
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 2 cut(s) 18, 69
GluI GCNGC 1 cut(s) 66
HaeIII GGCC 2 cut(s) 5, 16
Hpy166II GTNNAC 1 cut(s) 241
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 3 cut(s) 270, 510, 846
HpyCH4III ACNGT 2 cut(s) 213, 786
HpyCH4V TGCA 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 50
LpnPI CCDG 3 cut(s) 35, 1065, 1092
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 1 cut(s) 104
MaeI CTAG 2 cut(s) 18, 69
MboII GAAGA 1 cut(s) 1008
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 1125
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 1080
MvaI CCWGG 1 cut(s) 1080
MwoI GCNNNNNNNGC 2 cut(s) 22, 50
PflMI CCANNNNNTGG 1 cut(s) 12
PkrI GCNGC 1 cut(s) 67
PsiI TTATAA 5 cut(s) 195, 627, 771, 948, 1044
Psp6I CCWGG 1 cut(s) 1078
PspEI GGTNACC 1 cut(s) 972
PspGI CCWGG 1 cut(s) 1078
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SaqAI TTAA 1 cut(s) 1125
SatI GCNGC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 1080
SfaNI GCATC 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 967
SmoI CTYRAG 1 cut(s) 967
SsiI CCGC 7 cut(s) 131, 278, 374, 608, 635, 710, 959
SspMI CTAG 2 cut(s) 18, 69
StyD4I CCNGG 1 cut(s) 1078
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 2 cut(s) 213, 786
TatI WGTACW 1 cut(s) 240
Tru1I TTAA 1 cut(s) 1125
Tru9I TTAA 1 cut(s) 1125
TseI GCWGC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 1008
TspGWI ACGGA 1 cut(s) 1106
Van91I CCANNNNNTGG 1 cut(s) 12
XspI CTAG 2 cut(s) 18, 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.