Rroxscaffold_1G00026900

Extensin-2-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
33839785 .. 33846290
6506 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00026900.1

Sequence Viewer

Length: 2523 bp
ATGGATACTATCTTGCCATTCGCTGCAAATCTGGCTAAGCATAGGAGTCTATCCCCACAAGAAGGCTGTTCTAGGTTTGGTTTGGGAGCCGAGTTGAACTTCCCTATGGCAGGACCAGGGAGGTGCCCTTATGATCAAACAATCTGGGGTCATACTTTTTTGTTTAGTGCAGACTGCAGTTTACAAGCTCGGAAAGAACATCTTTTTGGGCACAGAGTTGGACCTGGGGAGAAGATGTTCCATTTGATGGTGAGAAGGTGCTTAATGCAAGCTCAGGATTGGAAAAGATGGGAGGTTCAGGAGCTATCATTAGCAACAGACAGGAGAGCCATAGAAGTCACAAATTGTTGGGGTCTCAAGTCTTCTGCACTTTTGCTCAAAATGGCCAGTCTATGGCCAAGCCTGCTGTATGCATTGGTTATATGCTTTATAGCCACCAGTGTAGCTGCTGGTGATGATAAACCTTATGTTTATGCATCTCCACCTCCACCACCCTCTTATCACTACGGGTCTCCACCACCTTACCAGTCCAAGTCACCTCCGTACTACTACAAGTCCCCTCCTCCTCCACGATATGTATATAAGTCGCCTCCCCCAGCGTATGCTTACAAGTCACCGCCACCACCATCTCCATCACCTCCTCCTCCTTATGTATACAAGTCACCACCACCACCTTCTCCATCCCCACCTCCACCTTACATATATAAATCACCGCCACCACCATCACCATCACCTCCTCCACCATACATGTACAAGTCACCACCACCACCTTCTCCATCTCCACCTCCTCCTTATATTTATAAATCACCACCACCACCATCACCTTCACCTCCTCCACCATACATTTACAAGTCACCACCACCACCACCACCATCTCCTCCACCACCGTACATTTACAAGTCACCACCTCCTCCACCCTATGTGTACAAGTCCCCACCACCACCATCACCTTCACCTCCTCCACCATACATTTACAAGTCACCACCACCACCATCTCCTTCACCTCCTCCTCCTTATGTCTACAAGTCACCACCACCGCCATCACCATCTCCTCCACCACCATACATTTACAAGTCACCACCTCCTCCATCCCCATCACCTCCTCCACCCTATGTGTACAAGTCCCCACCACCACCATCACCGTCACCTCCTCCACCATACATTTACAAGTCACCACCACCACCACCATCACCTTCACCTCCTCCACCATACATTTACAAGTCACCACCTCCTCCATCACCTCCTCCACCCTATGTGTATAAGTCCCCACCACCACCATCACCTTCACCTCCTCCACCATACATTTACAAGTCACCACCACCACCACCACCATCTCCTTCACCTCCTCCTCCTTATGTCTACAAGTCACCACCACCGCCATCATCATCTCCTCCACCACCATACATTTACAAGTCACCACCTCCTCCATCCCCATCACCTCCACCCTATGTGTACAAGTCCCCACCACCACCATCACCTTCACCTCCTCCACCATACATTTACAAGTCACCACCTCCTCCGTCTCCATCACCTCCCCCTCCCTATGTGTACAAGTCACCACCACCACCTTCTCCATCTCCACCTCCTCCTTACATTTATAAATCACCACCACCACCATCACCGTCACCTCCTCCTCCTTACATTTACAAGTCTCCTCCTCCTCCATCTCCATCACCACCCCCACCATATGTTTACAAGTCACCACCACCACCATCTCCTTCACCTCCTCCTCCTTATGTCTACAAGTCACCACCACCACCATCACCATCTCCTCCACCACCATACATTTACAAGTCACCACCTCCTCCATCTCCATCACCTCCCCCTCCCTATGTGTACAAATCACCGCCACCACCTTCTCCATCTCCACCTCCTCCTTACATTTATAAATCACCACCACCACCATCACCGTCACCTCCTCCTCCTTACATTTACAAGTCTCCTTCTCCTCCATCTCCATCACCGCCCCCACCATATGTTTACAAGTCACCACCACCACCACCACCGTCTCCGTCACCTCCCCCTCCTTATGTCTATAAGTCCCCACCTCCTCCATCCTCATCGCCCCTCCTCCTTATATCTACAAATCACCACCACCACCATCACCTTCACCTCCTCCAGTTTACTACTATAAGTCGCCACCTCCACCATCACCCCCACCGCCCAACCCTTATTATTACAAATCTCCTCCACCACCAACTCATTACTAACCTAATTCAGTTTTTGTTCCATTTGTGTAAGTGTCCTTCAACTACATGTATCGAAGATAGTAAAAAGGATCTTATATTGACCAAAAGTCGTAAAGAAGGTCTACACAAAGCAAAAAACTTGATCAGCACAATAGAAAAATGGTTCGAAAAGAGAATGCATTTTCCTTCTCTTCTATTTTTATCAGAAGACACGAAACAATTCATAATGTGCCAAACTAGACATAATGATCTACTTGTCCAGAATGCGATGGAAAGATATTTCAATTTGGAGGTATCCAACGTCGGACAGAAGGGACAATTTAGTTGTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

840

Amino Acids

92.17

Weight (kDa)

9.57

Isoelectric Point (pI)

132.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 801, 1599, 1887
AccB1I GGYRCC 1 cut(s) 123
AccB7I CCANNNNNTGG 2 cut(s) 247, 393
AccI GTMKAC 5 cut(s) 654, 1020, 1359, 1740, 2311
AciI CCGC 7 cut(s) 617, 713, 1037, 1376, 1847, 1964, 2161
AclWI GGATC 1 cut(s) 2286
AcoI YGGCCR 2 cut(s) 384, 395
AfaI GTAC 8 cut(s) 545, 752, 890, 926, 1118, 1454, 1550, 1838
AfiI CCNNNNNNNGG 4 cut(s) 62, 110, 247, 393
AflIII ACRYGT 2 cut(s) 747, 2255
AgsI TTSAA 3 cut(s) 97, 2250, 2473
AhdI GACNNNNNGTC 1 cut(s) 2295
AjnI CCWGG 2 cut(s) 115, 223
AjuI GAANNNNNNNTTGG 2 cut(s) 189, 221
AloI GAACNNNNNNTCC 2 cut(s) 221, 253
AluBI AGCT 4 cut(s) 188, 272, 304, 446
AluI AGCT 4 cut(s) 188, 272, 304, 446
Alw26I GTCTC 6 cut(s) 359, 516, 1527, 1656, 1944, 2013
AlwI GGATC 1 cut(s) 2286
AoxI GGCC 2 cut(s) 384, 395
ApeKI GCWGC 2 cut(s) 23, 446
Asp700I GAANNNNTTC 2 cut(s) 236, 2408
AspS9I GGNCC 2 cut(s) 113, 221
AsuII TTCGAA 1 cut(s) 2355
AvaII GGWCC 2 cut(s) 113, 221
BaeGI GKGCMC 2 cut(s) 128, 213
BalI TGGCCA 2 cut(s) 386, 397
BanI GGYRCC 1 cut(s) 123
BarI GAAGNNNNNNTAC 2 cut(s) 2230, 2262
BbsI GAAGAC 2 cut(s) 354, 2403
BbvI GCAGC 2 cut(s) 10, 433
BciT130I CCWGG 2 cut(s) 117, 225
BciVI GTATCC 1 cut(s) 2494
BclI TGATCA 2 cut(s) 133, 2331
BcoDI GTCTC 6 cut(s) 359, 516, 1527, 1656, 1944, 2013
BfaI CTAG 2 cut(s) 72, 2427
BfmI CTRYAG 1 cut(s) 175
BfuI GTATCC 1 cut(s) 2494
BisI GCNGC 2 cut(s) 24, 447
BlpI GCTNAGC 1 cut(s) 36
BlsI GCNGC 2 cut(s) 25, 448
Bme1390I CCNGG 2 cut(s) 117, 225
Bme18I GGWCC 2 cut(s) 113, 221
BmeRI GACNNNNNGTC 1 cut(s) 2295
BmgT120I GGNCC 2 cut(s) 113, 221
BmiI GGNNCC 2 cut(s) 88, 125
BmrFI CCNGG 2 cut(s) 117, 225
BmsI GCATC 1 cut(s) 485
BpiI GAAGAC 2 cut(s) 354, 2403
BpmI CTGGAG 1 cut(s) 2102
Bpu10I CCTNAGC 1 cut(s) 273
Bpu1102I GCTNAGC 1 cut(s) 36
Bpu14I TTCGAA 1 cut(s) 2355
BpuEI CTTGAG 1 cut(s) 341
BsaI GGTCTC 2 cut(s) 359, 516
BsaJI CCNNGG 2 cut(s) 116, 224
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 110, 247, 393
Bse1I ACTGG 4 cut(s) 387, 438, 526, 2119
BseBI CCWGG 2 cut(s) 117, 225
BseDI CCNNGG 2 cut(s) 116, 224
BseGI GGATG 4 cut(s) 680, 1088, 1427, 2054
BseLI CCNNNNNNNGG 4 cut(s) 62, 110, 247, 393
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 4 cut(s) 387, 438, 526, 2119
BseSI GKGCMC 2 cut(s) 128, 213
BseXI GCAGC 2 cut(s) 10, 433
BseYI CCCAGC 1 cut(s) 595
BsgI GTGCAG 2 cut(s) 189, 351
BshFI GGCC 2 cut(s) 386, 397
BshNI GGYRCC 1 cut(s) 123
BslFI GGGAC 7 cut(s) 541, 916, 1108, 1249, 1444, 2026, 2517
BslI CCNNNNNNNGG 4 cut(s) 62, 110, 247, 393
BsmAI GTCTC 6 cut(s) 359, 516, 1527, 1656, 1944, 2013
BsmBI CGTCTC 2 cut(s) 1527, 2013
BsmFI GGGAC 7 cut(s) 541, 916, 1108, 1249, 1444, 2026, 2517
BsmI GAATGC 2 cut(s) 2370, 2458
BsnI GGCC 2 cut(s) 386, 397
Bso31I GGTCTC 2 cut(s) 359, 516
Bsp119I TTCGAA 1 cut(s) 2355
Bsp1286I GDGCHC 2 cut(s) 128, 213
Bsp1407I TGTACA 6 cut(s) 750, 924, 1116, 1452, 1548, 1836
Bsp143I GATC 4 cut(s) 133, 2278, 2331, 2437
Bsp1720I GCTNAGC 1 cut(s) 36
BspACI CCGC 7 cut(s) 617, 713, 1037, 1376, 1847, 1964, 2161
BspANI GGCC 2 cut(s) 386, 397
BspCNI CTCAG 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 88, 125
BspMAI CTGCAG 1 cut(s) 179
BspPI GGATC 1 cut(s) 2286
BspT104I TTCGAA 1 cut(s) 2355
BspT107I GGYRCC 1 cut(s) 123
BspTNI GGTCTC 2 cut(s) 359, 516
BsrGI TGTACA 6 cut(s) 750, 924, 1116, 1452, 1548, 1836
BsrI ACTGG 4 cut(s) 387, 438, 526, 2119
BssECI CCNNGG 2 cut(s) 116, 224
BssMI GATC 4 cut(s) 133, 2278, 2331, 2437
BssNAI GTATAC 1 cut(s) 655
Bst1107I GTATAC 1 cut(s) 655
Bst2UI CCWGG 2 cut(s) 117, 225
Bst4CI ACNGT 5 cut(s) 888, 1143, 1623, 1911, 2007
Bst6I CTCTTC 1 cut(s) 2385
BstAUI TGTACA 6 cut(s) 750, 924, 1116, 1452, 1548, 1836
BstBI TTCGAA 1 cut(s) 2355
BstC8I GCNNGC 2 cut(s) 270, 404
BstDEI CTNAG 2 cut(s) 36, 273
BstENI CCTNNNNNAGG 1 cut(s) 108
BstF5I GGATG 4 cut(s) 680, 1088, 1427, 2054
BstKTI GATC 4 cut(s) 136, 2281, 2334, 2440
BstMAI GTCTC 6 cut(s) 359, 516, 1527, 1656, 1944, 2013
BstMBI GATC 4 cut(s) 133, 2278, 2331, 2437
BstMWI GCNNNNNNNGC 2 cut(s) 32, 403
BstNI CCWGG 2 cut(s) 117, 225
BstNSI RCATGY 2 cut(s) 751, 2259
BstSCI CCNGG 2 cut(s) 115, 223
BstSFI CTRYAG 1 cut(s) 175
BstSLI GKGCMC 2 cut(s) 128, 213
BstV1I GCAGC 2 cut(s) 10, 433
BstV2I GAAGAC 2 cut(s) 354, 2403
BstX2I RGATCY 1 cut(s) 2278
BstYI RGATCY 1 cut(s) 2278
BstZ17I GTATAC 1 cut(s) 655
BsuI GTATCC 1 cut(s) 2494
BsuRI GGCC 2 cut(s) 386, 397
BtgZI GCGATG 2 cut(s) 2046, 2471
BtsCI GGATG 4 cut(s) 680, 1088, 1427, 2054
BtsIMutI CAGTG 1 cut(s) 445
Cac8I GCNNGC 2 cut(s) 270, 404
Cfr13I GGNCC 2 cut(s) 113, 221
Csp6I GTAC 8 cut(s) 544, 751, 889, 925, 1117, 1453, 1549, 1837
CviAII CATG 2 cut(s) 748, 2256
CviQI GTAC 8 cut(s) 544, 751, 889, 925, 1117, 1453, 1549, 1837
DdeI CTNAG 2 cut(s) 36, 273
DpnI GATC 4 cut(s) 135, 2280, 2333, 2439
DpnII GATC 4 cut(s) 133, 2278, 2331, 2437
DriI GACNNNNNGTC 1 cut(s) 2295
EaeI YGGCCR 2 cut(s) 384, 395
Eam1104I CTCTTC 1 cut(s) 2385
Eam1105I GACNNNNNGTC 1 cut(s) 2295
EarI CTCTTC 1 cut(s) 2385
Eco31I GGTCTC 2 cut(s) 359, 516
Eco47I GGWCC 2 cut(s) 113, 221
EcoNI CCTNNNNNAGG 1 cut(s) 108
EcoRII CCWGG 2 cut(s) 115, 223
EcoT22I ATGCAT 3 cut(s) 415, 478, 2370
Esp3I CGTCTC 2 cut(s) 1527, 2013
FaeI CATG 2 cut(s) 751, 2259
FalI AAGNNNNNCTT 2 cut(s) 186, 218
FaqI GGGAC 7 cut(s) 541, 916, 1108, 1249, 1444, 2026, 2517
FatI CATG 2 cut(s) 747, 2255
FauNDI CATATG 2 cut(s) 1687, 1975
FbaI TGATCA 2 cut(s) 133, 2331
FblI GTMKAC 5 cut(s) 654, 1020, 1359, 1740, 2311
Fnu4HI GCNGC 2 cut(s) 24, 447
FokI GGATG 4 cut(s) 667, 1075, 1414, 2041
Fsp4HI GCNGC 2 cut(s) 24, 447
FspBI CTAG 2 cut(s) 72, 2427
GluI GCNGC 2 cut(s) 24, 447
GsaI CCCAGC 1 cut(s) 599
GsuI CTGGAG 1 cut(s) 2102
HaeIII GGCC 2 cut(s) 386, 397
Hin1II CATG 2 cut(s) 751, 2259
HinfI GANTC 1 cut(s) 46
Hpy188I TCNGA 3 cut(s) 192, 2395, 2495
Hpy188III TCNNGA 3 cut(s) 275, 299, 2449
Hpy99I CGWCG 1 cut(s) 2495
HpyCH4III ACNGT 5 cut(s) 888, 1143, 1623, 1911, 2007
HpyCH4IV ACGT 1 cut(s) 2490
HpyCH4V TGCA 8 cut(s) 26, 170, 177, 268, 368, 413, 476, 2368
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 403
HpyF3I CTNAG 2 cut(s) 36, 273
HpySE526I ACGT 1 cut(s) 2490
Hsp92II CATG 2 cut(s) 751, 2259
Ksp22I TGATCA 2 cut(s) 133, 2331
Kzo9I GATC 4 cut(s) 133, 2278, 2331, 2437
LmnI GCTCC 2 cut(s) 86, 301
Lsp1109I GCAGC 2 cut(s) 10, 433
LweI GCATC 1 cut(s) 485
MaeI CTAG 2 cut(s) 72, 2427
MaeII ACGT 1 cut(s) 2490
MalI GATC 4 cut(s) 135, 2280, 2333, 2439
MboI GATC 4 cut(s) 133, 2278, 2331, 2437
MboII GAAGA 5 cut(s) 244, 354, 2276, 2372, 2408
MflI RGATCY 1 cut(s) 2278
MhlI GDGCHC 2 cut(s) 128, 213
MlsI TGGCCA 2 cut(s) 386, 397
MluCI AATT 5 cut(s) 343, 2214, 2408, 2473, 2507
MluNI TGGCCA 2 cut(s) 386, 397
MlyI GAGTC 1 cut(s) 55
MmeI TCCRAC 3 cut(s) 199, 2473, 2511
Mox20I TGGCCA 2 cut(s) 386, 397
Mph1103I ATGCAT 3 cut(s) 415, 478, 2370
MroXI GAANNNNTTC 2 cut(s) 236, 2408
MscI TGGCCA 2 cut(s) 386, 397
MseI TTAA 1 cut(s) 263
Msp20I TGGCCA 2 cut(s) 386, 397
MspR9I CCNGG 2 cut(s) 117, 225
Mva1269I GAATGC 2 cut(s) 2370, 2458
MvaI CCWGG 2 cut(s) 117, 225
MwoI GCNNNNNNNGC 2 cut(s) 32, 403
NdeI CATATG 2 cut(s) 1687, 1975
NdeII GATC 4 cut(s) 133, 2278, 2331, 2437
NlaIII CATG 2 cut(s) 751, 2259
NlaIV GGNNCC 2 cut(s) 88, 125
NmeAIII GCCGAG 1 cut(s) 115
NsiI ATGCAT 3 cut(s) 415, 478, 2370
NspI RCATGY 2 cut(s) 751, 2259
NspV TTCGAA 1 cut(s) 2355
PciI ACATGT 2 cut(s) 747, 2255
PctI GAATGC 2 cut(s) 2370, 2458
PdmI GAANNNNTTC 2 cut(s) 236, 2408
PflMI CCANNNNNTGG 2 cut(s) 247, 393
PkrI GCNGC 2 cut(s) 25, 448
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
PscI ACATGT 2 cut(s) 747, 2255
PsiI TTATAA 3 cut(s) 801, 1599, 1887
Psp6I CCWGG 2 cut(s) 115, 223
PspFI CCCAGC 1 cut(s) 595
PspGI CCWGG 2 cut(s) 115, 223
PspN4I GGNNCC 2 cut(s) 88, 125
PspPI GGNCC 2 cut(s) 113, 221
PstI CTGCAG 1 cut(s) 179
PsuI RGATCY 1 cut(s) 2278
RsaI GTAC 8 cut(s) 545, 752, 890, 926, 1118, 1454, 1550, 1838
RsaNI GTAC 8 cut(s) 544, 751, 889, 925, 1117, 1453, 1549, 1837
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 2 cut(s) 24, 447
Sau3AI GATC 4 cut(s) 133, 2278, 2331, 2437
Sau96I GGNCC 2 cut(s) 113, 221
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 2 cut(s) 117, 225
SduI GDGCHC 2 cut(s) 128, 213
SfaNI GCATC 1 cut(s) 485
SfcI CTRYAG 1 cut(s) 175
SfuI TTCGAA 1 cut(s) 2355
SinI GGWCC 2 cut(s) 113, 221
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 5 cut(s) 343, 2214, 2408, 2473, 2507
SsiI CCGC 7 cut(s) 617, 713, 1037, 1376, 1847, 1964, 2161
SspMI CTAG 2 cut(s) 72, 2427
StyD4I CCNGG 2 cut(s) 115, 223
TaaI ACNGT 5 cut(s) 888, 1143, 1623, 1911, 2007
TaiI ACGT 1 cut(s) 2493
TaqI TCGA 2 cut(s) 2262, 2355
TasI AATT 5 cut(s) 343, 2214, 2408, 2473, 2507
TatI WGTACW 6 cut(s) 750, 924, 1116, 1452, 1548, 1836
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TscAI CASTG 1 cut(s) 445
TseI GCWGC 2 cut(s) 23, 446
TspDTI ATGAA 1 cut(s) 2401
TspGWI ACGGA 3 cut(s) 531, 1509, 2001
TspRI CASTG 1 cut(s) 445
Van91I CCANNNNNTGG 2 cut(s) 247, 393
VpaK11BI GGWCC 2 cut(s) 113, 221
XagI CCTNNNNNAGG 1 cut(s) 108
XceI RCATGY 2 cut(s) 751, 2259
XmiI GTMKAC 5 cut(s) 654, 1020, 1359, 1740, 2311
XmnI GAANNNNTTC 2 cut(s) 236, 2408
XspI CTAG 2 cut(s) 72, 2427
Zsp2I ATGCAT 3 cut(s) 415, 478, 2370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.