FvH4_4g11820

snRNA import into nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0007499
Physical Location & Seq
Reverse (-)
15557917 .. 15559159
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11820.t1

Sequence Viewer

Length: 1146 bp
ATGTCACCTCCTTCCGATCTCCTCCGCCGTCCGTTGAAGAGGCCACTGATCTCTAACCAGCAAAAACGCCGAGATCTCTCTCTGAAGCGTCAAGAGCAAAGCCGTGATTCTCAGCTCCACACCCGCCGCTTAACCTCAGCACTCCTCTCCCTCCCTCCAGAACAACCCGAACCCTCCTTGCCGGAGTACTACTCCGACTTGCACCTTGGCGATGAGGCCGCTTCTAAGTTTCTCAAAGGAGGCTTAGAGGTTCGAGAGTGGTTCCAAAAGGAGCTGATGCTTCCCGAGTGGATGATCGACGTCCCTCATCGCTTGCCTCATGACTGGTTTGTATTAGCCAGGCCAGCCGGGGAGCGTTGCTTGGTTGTTTCCTACGACGGATGCACCGTCAGTAGGCGGCGAAACGGCGCCATTCTTCATCGTTTTCCTTCTGCTCTACCCGATGGTAGTCGCTGCAGGACCAAAGCACAACCTTCATGTTCTATACTAGACTGTATCTTTCATGAAATGGACCAAACTTATTATGTCATTGACATGGTGTGCTGGAGAGGCCACTCTTTGTATGATTGCACGGCGGAGTTCAAGTTTTTCTGGTTGAATTCTAAGCTAGCCGAGACTCGCGCTTGCGATCCTCCATCATATTATCACAGGTATAGATTCAACTTAGTTCCTTGGTATACATGTGATCTCACTGGTCTACACACAGCATATAACGGACCAGTACCATACGTAAAGGACGGTCTAATGTTTTATAACAAATATGCACATTATCAACCCCGCTTAACACCCTTGGCCTTGGTTTGGAAAGATCACAACTGTAGTAACTATGTTGTTGACACAGATAATGAAGGGAAGGTCCCATGCCATCAGCAGATAGTTTTGAAGCTGCAACGATGTCTTCTTCGTTTCGCTATTGCTGATGGGGGATTGACCATTGTTGATGGGAAGCTTGAGAAGGCAGATATACATTACCTTGGCAAGTCCAATCGGGCACGCGCTTTTGCAGATTGTTTCTCAATAATTATGTTCCAAAGTATGGTTCGAGGATCTTCCATGAAGATTGATGATCTGATAGCATCAATCAGCTCATCTGATGATGAAGCAAATGGACCTGATGATGTTGAGATGATGGATGGTAAATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
No domains found.

Protein Analysis

382

Amino Acids

43.91

Weight (kDa)

7.55

Isoelectric Point (pI)

55.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPN1_m3Gcap_bd PF21974 92 - 265 8e-50 Snurportin1, m3G cap-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 753
AatII GACGTC 1 cut(s) 303
AccB1I GGYRCC 1 cut(s) 407
AccB7I CCANNNNNTGG 1 cut(s) 1036
AccI GTMKAC 2 cut(s) 677, 697
AccII CGCG 2 cut(s) 621, 996
AciI CCGC 7 cut(s) 25, 124, 127, 219, 397, 575, 778
AclWI GGATC 2 cut(s) 623, 1054
AcsI RAATTY 1 cut(s) 598
AcuI CTGAAG 1 cut(s) 104
AcyI GRCGYC 2 cut(s) 300, 408
AfaI GTAC 2 cut(s) 188, 723
AfiI CCNNNNNNNGG 3 cut(s) 393, 801, 1036
AflIII ACRYGT 1 cut(s) 680
AgsI TTSAA 5 cut(s) 37, 583, 598, 661, 883
AjnI CCWGG 1 cut(s) 338
AjuI GAANNNNNNNTTGG 2 cut(s) 1023, 1055
AluBI AGCT 6 cut(s) 115, 274, 607, 886, 949, 1086
AluI AGCT 6 cut(s) 115, 274, 607, 886, 949, 1086
Alw26I GTCTC 1 cut(s) 608
AlwI GGATC 2 cut(s) 623, 1054
Ama87I CYCGRG 1 cut(s) 284
AoxI GGCC 5 cut(s) 41, 216, 341, 550, 792
ApeKI GCWGC 2 cut(s) 453, 886
ApoI RAATTY 1 cut(s) 598
AspLEI GCGC 3 cut(s) 410, 623, 998
AspS9I GGNCC 5 cut(s) 459, 511, 716, 856, 1109
AsuC2I CCSGG 1 cut(s) 349
AsuNHI GCTAGC 1 cut(s) 607
AvaI CYCGRG 1 cut(s) 284
AvaII GGWCC 5 cut(s) 459, 511, 716, 856, 1109
BaeGI GKGCMC 1 cut(s) 994
BanI GGYRCC 1 cut(s) 407
BbsI GAAGAC 1 cut(s) 890
BbvCI CCTCAGC 1 cut(s) 136
BbvI GCAGC 2 cut(s) 440, 873
BccI CCATC 7 cut(s) 437, 643, 873, 914, 935, 1123, 1127
BceAI ACGGC 4 cut(s) 12, 87, 421, 588
BciT130I CCWGG 1 cut(s) 340
BcnI CCSGG 1 cut(s) 349
BcoDI GTCTC 1 cut(s) 608
BfaI CTAG 2 cut(s) 488, 608
BfmI CTRYAG 2 cut(s) 454, 817
BfoI RGCGCY 1 cut(s) 411
BglII AGATCT 1 cut(s) 73
BisI GCNGC 5 cut(s) 127, 219, 398, 454, 887
BlsI GCNGC 5 cut(s) 128, 220, 399, 455, 888
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 2 cut(s) 340, 349
Bme18I GGWCC 5 cut(s) 459, 511, 716, 856, 1109
BmeT110I CYCGRG 1 cut(s) 284
BmgT120I GGNCC 5 cut(s) 459, 511, 716, 856, 1109
BmiI GGNNCC 3 cut(s) 263, 409, 858
BmrFI CCNGG 2 cut(s) 340, 349
BmsI GCATC 3 cut(s) 267, 371, 1085
BmtI GCTAGC 1 cut(s) 611
BpiI GAAGAC 1 cut(s) 890
BplI GAGNNNNNCTC 2 cut(s) 176, 208
BpmI CTGGAG 2 cut(s) 141, 565
Bpu10I CCTNAGC 1 cut(s) 136
BpuEI CTTGAG 1 cut(s) 971
BpuMI CCSGG 1 cut(s) 349
BsaAI YACGTR 1 cut(s) 730
BsaHI GRCGYC 2 cut(s) 300, 408
BsaJI CCNNGG 6 cut(s) 205, 348, 671, 789, 795, 973
BsaXI ACNNNNNCTCC 2 cut(s) 569, 599
Bsc4I CCNNNNNNNGG 3 cut(s) 393, 801, 1036
Bse1I ACTGG 3 cut(s) 329, 697, 719
BseBI CCWGG 1 cut(s) 340
BseDI CCNNGG 6 cut(s) 205, 348, 671, 789, 795, 973
BseGI GGATG 3 cut(s) 297, 386, 1138
BseLI CCNNNNNNNGG 3 cut(s) 393, 801, 1036
BseMII CTCAG 2 cut(s) 125, 150
BseNI ACTGG 3 cut(s) 329, 697, 719
BseRI GAGGAG 2 cut(s) 11, 134
BseSI GKGCMC 1 cut(s) 994
BseXI GCAGC 2 cut(s) 440, 873
Bsh1236I CGCG 2 cut(s) 621, 996
BshFI GGCC 5 cut(s) 43, 218, 343, 552, 794
BshNI GGYRCC 1 cut(s) 407
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 2 cut(s) 182, 348
BslFI GGGAC 2 cut(s) 287, 842
BslI CCNNNNNNNGG 3 cut(s) 393, 801, 1036
BsmAI GTCTC 1 cut(s) 608
BsmFI GGGAC 2 cut(s) 287, 842
BsnI GGCC 5 cut(s) 43, 218, 343, 552, 794
BsoBI CYCGRG 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 994
Bsp143I GATC 9 cut(s) 16, 48, 73, 294, 628, 685, 808, 1046, 1066
BspACI CCGC 7 cut(s) 25, 124, 127, 219, 397, 575, 778
BspANI GGCC 5 cut(s) 43, 218, 343, 552, 794
BspCNI CTCAG 2 cut(s) 124, 149
BspFNI CGCG 2 cut(s) 621, 996
BspHI TCATGA 2 cut(s) 319, 502
BspLI GGNNCC 3 cut(s) 263, 409, 858
BspMAI CTGCAG 1 cut(s) 458
BspOI GCTAGC 1 cut(s) 611
BspPI GGATC 2 cut(s) 623, 1054
BspT107I GGYRCC 1 cut(s) 407
BsrI ACTGG 3 cut(s) 329, 697, 719
BssECI CCNNGG 6 cut(s) 205, 348, 671, 789, 795, 973
BssMI GATC 9 cut(s) 16, 48, 73, 294, 628, 685, 808, 1046, 1066
BssNAI GTATAC 1 cut(s) 678
BssNI GRCGYC 2 cut(s) 300, 408
BssT1I CCWWGG 5 cut(s) 205, 671, 789, 795, 973
Bst1107I GTATAC 1 cut(s) 678
Bst2UI CCWGG 1 cut(s) 340
Bst4CI ACNGT 4 cut(s) 388, 494, 740, 818
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 2 cut(s) 300, 408
BstBAI YACGTR 1 cut(s) 730
BstC8I GCNNGC 5 cut(s) 314, 345, 609, 625, 994
BstDEI CTNAG 6 cut(s) 111, 136, 225, 244, 603, 664
BstF5I GGATG 3 cut(s) 297, 386, 1138
BstFNI CGCG 2 cut(s) 621, 996
BstH2I RGCGCY 1 cut(s) 411
BstHHI GCGC 3 cut(s) 410, 623, 998
BstKTI GATC 9 cut(s) 19, 51, 76, 297, 631, 688, 811, 1049, 1069
BstMAI GTCTC 1 cut(s) 608
BstMBI GATC 9 cut(s) 16, 48, 73, 294, 628, 685, 808, 1046, 1066
BstMWI GCNNNNNNNGC 3 cut(s) 94, 344, 549
BstNI CCWGG 1 cut(s) 340
BstNSI RCATGY 1 cut(s) 684
BstSCI CCNGG 2 cut(s) 338, 347
BstSFI CTRYAG 2 cut(s) 454, 817
BstSLI GKGCMC 1 cut(s) 994
BstSNI TACGTA 1 cut(s) 730
BstUI CGCG 2 cut(s) 621, 996
BstV1I GCAGC 2 cut(s) 440, 873
BstV2I GAAGAC 1 cut(s) 890
BstX2I RGATCY 2 cut(s) 73, 1046
BstYI RGATCY 2 cut(s) 73, 1046
BstZ17I GTATAC 1 cut(s) 678
BsuRI GGCC 5 cut(s) 43, 218, 343, 552, 794
BtgZI GCGATG 2 cut(s) 225, 293
BtsCI GGATG 3 cut(s) 297, 386, 1138
BtsIMutI CAGTG 2 cut(s) 44, 690
Cac8I GCNNGC 5 cut(s) 314, 345, 609, 625, 994
CciI TCATGA 2 cut(s) 319, 502
CfoI GCGC 3 cut(s) 410, 623, 998
Cfr13I GGNCC 5 cut(s) 459, 511, 716, 856, 1109
CseI GACGC 1 cut(s) 77
Csp6I GTAC 2 cut(s) 187, 722
CviAII CATG 7 cut(s) 320, 477, 503, 535, 681, 861, 1054
CviQI GTAC 2 cut(s) 187, 722
DdeI CTNAG 6 cut(s) 111, 136, 225, 244, 603, 664
DinI GGCGCC 1 cut(s) 409
DpnI GATC 9 cut(s) 18, 50, 75, 296, 630, 687, 810, 1048, 1068
DpnII GATC 9 cut(s) 16, 48, 73, 294, 628, 685, 808, 1046, 1066
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 2 cut(s) 14, 590
Eco105I TACGTA 1 cut(s) 730
Eco130I CCWWGG 5 cut(s) 205, 671, 789, 795, 973
Eco47I GGWCC 5 cut(s) 459, 511, 716, 856, 1109
Eco57I CTGAAG 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 284
EcoO109I RGGNCCY 1 cut(s) 856
EcoRI GAATTC 1 cut(s) 598
EcoRII CCWGG 1 cut(s) 338
EcoT14I CCWWGG 5 cut(s) 205, 671, 789, 795, 973
EgeI GGCGCC 1 cut(s) 409
EheI GGCGCC 1 cut(s) 409
ErhI CCWWGG 5 cut(s) 205, 671, 789, 795, 973
FaeI CATG 7 cut(s) 323, 480, 506, 538, 684, 864, 1057
FaqI GGGAC 2 cut(s) 287, 842
FatI CATG 7 cut(s) 319, 476, 502, 534, 680, 860, 1053
FauI CCCGC 2 cut(s) 131, 785
FblI GTMKAC 2 cut(s) 677, 697
Fnu4HI GCNGC 5 cut(s) 127, 219, 398, 454, 887
FokI GGATG 2 cut(s) 304, 393
Fsp4HI GCNGC 5 cut(s) 127, 219, 398, 454, 887
FspBI CTAG 2 cut(s) 488, 608
GlaI GCGC 3 cut(s) 409, 622, 997
GluI GCNGC 5 cut(s) 127, 219, 398, 454, 887
GsuI CTGGAG 2 cut(s) 141, 565
HaeII RGCGCY 1 cut(s) 411
HaeIII GGCC 5 cut(s) 43, 218, 343, 552, 794
HapII CCGG 2 cut(s) 182, 348
HgaI GACGC 1 cut(s) 77
HhaI GCGC 3 cut(s) 410, 623, 998
Hin1I GRCGYC 2 cut(s) 300, 408
Hin1II CATG 7 cut(s) 323, 480, 506, 538, 684, 864, 1057
Hin6I GCGC 3 cut(s) 408, 621, 996
HinP1I GCGC 3 cut(s) 408, 621, 996
HincII GTYRAC 1 cut(s) 835
HindII GTYRAC 1 cut(s) 835
HindIII AAGCTT 1 cut(s) 947
HinfI GANTC 3 cut(s) 107, 616, 657
HpaII CCGG 2 cut(s) 182, 348
Hpy166II GTNNAC 3 cut(s) 678, 698, 835
Hpy188I TCNGA 5 cut(s) 16, 84, 196, 1071, 1093
Hpy188III TCNNGA 6 cut(s) 92, 158, 254, 284, 320, 503
Hpy8I GTNNAC 3 cut(s) 678, 698, 835
Hpy99I CGWCG 2 cut(s) 302, 380
HpyAV CCTTC 6 cut(s) 21, 438, 483, 842, 847, 949
HpyCH4III ACNGT 4 cut(s) 388, 494, 740, 818
HpyCH4IV ACGT 2 cut(s) 300, 729
HpyCH4V TGCA 7 cut(s) 202, 384, 456, 570, 764, 889, 1004
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 344, 549
HpyF3I CTNAG 6 cut(s) 111, 136, 225, 244, 603, 664
HpySE526I ACGT 2 cut(s) 300, 729
Hsp92I GRCGYC 2 cut(s) 300, 408
Hsp92II CATG 7 cut(s) 323, 480, 506, 538, 684, 864, 1057
HspAI GCGC 3 cut(s) 408, 621, 996
KasI GGCGCC 1 cut(s) 407
Kzo9I GATC 9 cut(s) 16, 48, 73, 294, 628, 685, 808, 1046, 1066
LmnI GCTCC 3 cut(s) 120, 271, 352
Lsp1109I GCAGC 2 cut(s) 440, 873
LweI GCATC 3 cut(s) 267, 371, 1085
MaeI CTAG 2 cut(s) 488, 608
MaeII ACGT 2 cut(s) 300, 729
MaeIII GTNAC 2 cut(s) 3, 821
MalI GATC 9 cut(s) 18, 50, 75, 296, 630, 687, 810, 1048, 1068
MboI GATC 9 cut(s) 16, 48, 73, 294, 628, 685, 808, 1046, 1066
MboII GAAGA 6 cut(s) 49, 407, 890, 893, 1041, 1069
MflI RGATCY 2 cut(s) 73, 1046
MhlI GDGCHC 1 cut(s) 994
MluCI AATT 2 cut(s) 598, 1020
Mly113I GGCGCC 1 cut(s) 408
MlyI GAGTC 1 cut(s) 610
MmeI TCCRAC 1 cut(s) 219
MseI TTAA 2 cut(s) 131, 782
MslI CAYNNNNRTG 1 cut(s) 533
MspI CCGG 2 cut(s) 182, 348
MspR9I CCNGG 2 cut(s) 340, 349
MvaI CCWGG 1 cut(s) 340
MvnI CGCG 2 cut(s) 621, 996
MwoI GCNNNNNNNGC 3 cut(s) 94, 344, 549
NarI GGCGCC 1 cut(s) 408
NciI CCSGG 1 cut(s) 349
NdeII GATC 9 cut(s) 16, 48, 73, 294, 628, 685, 808, 1046, 1066
NheI GCTAGC 1 cut(s) 607
NlaIII CATG 7 cut(s) 323, 480, 506, 538, 684, 864, 1057
NlaIV GGNNCC 3 cut(s) 263, 409, 858
NmeAIII GCCGAG 2 cut(s) 95, 637
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 684
PagI TCATGA 2 cut(s) 319, 502
PciI ACATGT 1 cut(s) 680
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PfeI GAWTC 2 cut(s) 107, 657
PflMI CCANNNNNTGG 1 cut(s) 1036
PkrI GCNGC 5 cut(s) 128, 220, 399, 455, 888
PleI GAGTC 1 cut(s) 610
PluTI GGCGCC 1 cut(s) 411
PpsI GAGTC 1 cut(s) 610
Ppu21I YACGTR 1 cut(s) 730
PpuMI RGGWCCY 1 cut(s) 856
PscI ACATGT 1 cut(s) 680
PsiI TTATAA 1 cut(s) 753
Psp5II RGGWCCY 1 cut(s) 856
Psp6I CCWGG 1 cut(s) 338
PspGI CCWGG 1 cut(s) 338
PspN4I GGNNCC 3 cut(s) 263, 409, 858
PspPI GGNCC 5 cut(s) 459, 511, 716, 856, 1109
PspPPI RGGWCCY 1 cut(s) 856
PstI CTGCAG 1 cut(s) 458
PsuI RGATCY 2 cut(s) 73, 1046
RsaI GTAC 2 cut(s) 188, 723
RsaNI GTAC 2 cut(s) 187, 722
RseI CAYNNNNRTG 1 cut(s) 533
SaqAI TTAA 2 cut(s) 131, 782
SatI GCNGC 5 cut(s) 127, 219, 398, 454, 887
Sau3AI GATC 9 cut(s) 16, 48, 73, 294, 628, 685, 808, 1046, 1066
Sau96I GGNCC 5 cut(s) 459, 511, 716, 856, 1109
ScaI AGTACT 1 cut(s) 188
SchI GAGTC 1 cut(s) 610
ScrFI CCNGG 2 cut(s) 340, 349
SduI GDGCHC 1 cut(s) 994
SfaNI GCATC 3 cut(s) 267, 371, 1085
SfcI CTRYAG 2 cut(s) 454, 817
SfoI GGCGCC 1 cut(s) 409
SinI GGWCC 5 cut(s) 459, 511, 716, 856, 1109
SmiMI CAYNNNNRTG 1 cut(s) 533
SmlI CTYRAG 1 cut(s) 950
SmoI CTYRAG 1 cut(s) 950
SnaBI TACGTA 1 cut(s) 730
Sse9I AATT 2 cut(s) 598, 1020
SsiI CCGC 7 cut(s) 25, 124, 127, 219, 397, 575, 778
SspDI GGCGCC 1 cut(s) 407
SspMI CTAG 2 cut(s) 488, 608
StyD4I CCNGG 2 cut(s) 338, 347
StyI CCWWGG 5 cut(s) 205, 671, 789, 795, 973
TaaI ACNGT 4 cut(s) 388, 494, 740, 818
TaiI ACGT 2 cut(s) 303, 732
TaqI TCGA 3 cut(s) 253, 297, 1042
TasI AATT 2 cut(s) 598, 1020
TatI WGTACW 1 cut(s) 186
TauI GCSGC 3 cut(s) 129, 221, 400
TfiI GAWTC 2 cut(s) 107, 657
Tru1I TTAA 2 cut(s) 131, 782
Tru9I TTAA 2 cut(s) 131, 782
TscAI CASTG 2 cut(s) 51, 697
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 2 cut(s) 453, 886
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 7 cut(s) 407, 465, 491, 519, 861, 1070, 1113
TspGWI ACGGA 3 cut(s) 21, 393, 729
TspRI CASTG 2 cut(s) 51, 697
Van91I CCANNNNNTGG 1 cut(s) 1036
VpaK11BI GGWCC 5 cut(s) 459, 511, 716, 856, 1109
XapI RAATTY 1 cut(s) 598
XceI RCATGY 1 cut(s) 684
XmiI GTMKAC 2 cut(s) 677, 697
XspI CTAG 2 cut(s) 488, 608
ZraI GACGTC 1 cut(s) 301
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.