Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8062950.1

Orthogroup ID

OG0007499

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 445

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8062950.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 364 bp

atggcaccctccgatctccgccgtccgtacaaacggccgcagctctcagaccagcagaggcggagagaggtttcgctgaagcgccaagagcagagccgcgacgccgagctccaagcgcggcgcttagcctccacgctcctctccctcccgccggaacaacaaccctcggatcccgaacccgagcccagttcctccactgactacgacctccgcgacgcgtcgaagctgaaaggcccggcggcgcggaagtggttcgcgaagcagctcatgctcccggagtggatgatcgacgtccctcatcgcctcccccatgactggtatgtgcttccgaggccagcagggaggcgatgcttcgtggtctcat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

14.14

Weight (kDa)

9.9

Isoelectric Point (pI)

101.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007499)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g11820
rosa_chinensis	RchiOBHm_Chr4g0407901 RchiOBHm_Chr4g0407951 RchiOBHm_Chr4g0409241
rosa_laevigata	RLG00000008584 RLG00000008680
rosa_multiflora	Rmu_co8062950.1_g000001 Rmu_co8330257.1_g000001 Rmu_sc0002073.1_g000022 Rmu_sc0002377.1_g000017
rosa_roxburghii	Rroxscaffold_5G00352510
rosa_rugosa	Rorug04G0082800 Rorug04G0082900 Rorug04G0091400
rosa_samantha	Rh4AG147600 Rh4AG154700 Rh4BG144900 Rh4BG152400 Rh4CG154100 Rh4CG163800 Rh4DG147500 Rh7AG365900 Rh7CG384500
rosa_wichuraiana	Rw0G019660 Rw4G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	294
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	6 cut(s)	99, 118, 213, 218, 244, 257
AciI	CCGC	9 cut(s)	19, 38, 61, 97, 118, 149, 211, 239, 244
AclWI	GGATC	2 cut(s)	164, 177
AcoI	YGGCCR	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	98
AcyI	GRCGYC	2 cut(s)	102, 291
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	2 cut(s)	151, 315
AflIII	ACRYGT	1 cut(s)	216
AluBI	AGCT	4 cut(s)	43, 109, 226, 265
AluI	AGCT	4 cut(s)	43, 109, 226, 265
Alw21I	GWGCWC	1 cut(s)	111
AlwI	GGATC	2 cut(s)	164, 177
Ama87I	CYCGRG	1 cut(s)	179
AoxI	GGCC	3 cut(s)	35, 232, 332
ApeKI	GCWGC	2 cut(s)	40, 262
Asp700I	GAANNNNTTC	1 cut(s)	251
AspLEI	GCGC	4 cut(s)	84, 118, 123, 244
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	2 cut(s)	236, 275
AvaI	CYCGRG	1 cut(s)	179
BamHI	GGATCC	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	111, 186
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	2 cut(s)	52, 274
BceAI	ACGGC	2 cut(s)	6, 50
BcnI	CCSGG	2 cut(s)	236, 275
BfoI	RGCGCY	2 cut(s)	85, 124
BisI	GCNGC	6 cut(s)	38, 41, 97, 119, 240, 263
BlpI	GCTNAGC	1 cut(s)	124
BlsI	GCNGC	6 cut(s)	39, 42, 98, 120, 241, 264
Bme1390I	CCNGG	2 cut(s)	236, 275
BmeT110I	CYCGRG	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	6, 171
BmrFI	CCNGG	2 cut(s)	236, 275
BmrI	ACTGGG	1 cut(s)	180
BmsI	GCATC	1 cut(s)	338
BmuI	ACTGGG	1 cut(s)	180
Bpu1102I	GCTNAGC	1 cut(s)	124
BpuMI	CCSGG	2 cut(s)	236, 275
BsaHI	GRCGYC	2 cut(s)	102, 291
BsaJI	CCNNGG	2 cut(s)	165, 329
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 315
Bse1I	ACTGG	2 cut(s)	186, 320
BseDI	CCNNGG	2 cut(s)	165, 329
BseGI	GGATG	1 cut(s)	288
BseLI	CCNNNNNNNGG	2 cut(s)	151, 315
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	2 cut(s)	186, 320
BseRI	GAGGAG	1 cut(s)	128
BseX3I	CGGCCG	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	52, 274
Bsh1236I	CGCG	6 cut(s)	99, 118, 213, 218, 244, 257
Bsh1285I	CGRYCG	1 cut(s)	38
BshFI	GGCC	3 cut(s)	37, 234, 334
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	3 cut(s)	152, 236, 275
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	2 cut(s)	151, 315
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	3 cut(s)	37, 234, 334
BsoBI	CYCGRG	1 cut(s)	179
Bsp1286I	GDGCHC	2 cut(s)	111, 186
Bsp143I	GATC	3 cut(s)	13, 169, 285
Bsp1720I	GCTNAGC	1 cut(s)	124
Bsp68I	TCGCGA	1 cut(s)	257
BspACI	CCGC	9 cut(s)	19, 38, 61, 97, 118, 149, 211, 239, 244
BspANI	GGCC	3 cut(s)	37, 234, 334
BspCNI	CTCAG	1 cut(s)	59
BspFNI	CGCG	6 cut(s)	99, 118, 213, 218, 244, 257
BspLI	GGNNCC	2 cut(s)	6, 171
BspPI	GGATC	2 cut(s)	164, 177
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	186, 320
BssECI	CCNNGG	2 cut(s)	165, 329
BssMI	GATC	3 cut(s)	13, 169, 285
BssNI	GRCGYC	2 cut(s)	102, 291
BstACI	GRCGYC	2 cut(s)	102, 291
BstAPI	GCANNNNNTGC	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	2 cut(s)	46, 124
BstF5I	GGATG	1 cut(s)	288
BstFNI	CGCG	6 cut(s)	99, 118, 213, 218, 244, 257
BstH2I	RGCGCY	2 cut(s)	85, 124
BstHHI	GCGC	4 cut(s)	84, 118, 123, 244
BstKTI	GATC	3 cut(s)	16, 172, 288
BstMBI	GATC	3 cut(s)	13, 169, 285
BstMCI	CGRYCG	1 cut(s)	38
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 115, 268, 331
BstSCI	CCNGG	2 cut(s)	234, 273
BstUI	CGCG	6 cut(s)	99, 118, 213, 218, 244, 257
BstV1I	GCAGC	2 cut(s)	52, 274
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BstZI	CGGCCG	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	37, 234, 334
BtgZI	GCGATG	1 cut(s)	284
BtsCI	GGATG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	195
BtuMI	TCGCGA	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	336
CfoI	GCGC	4 cut(s)	84, 118, 123, 244
Cfr13I	GGNCC	1 cut(s)	233
CseI	GACGC	3 cut(s)	110, 207, 224
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	2 cut(s)	268, 311
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	2 cut(s)	46, 124
DpnI	GATC	3 cut(s)	15, 171, 287
DpnII	GATC	3 cut(s)	13, 169, 285
EaeI	YGGCCR	1 cut(s)	35
EagI	CGGCCG	1 cut(s)	35
EciI	GGCGGA	2 cut(s)	8, 76
Ecl136II	GAGCTC	1 cut(s)	109
EclXI	CGGCCG	1 cut(s)	35
Eco24I	GRGCYC	2 cut(s)	111, 186
Eco52I	CGGCCG	1 cut(s)	35
Eco53kI	GAGCTC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	109
EcoT38I	GRGCYC	2 cut(s)	111, 186
FaeI	CATG	2 cut(s)	271, 314
FaiI	YATR	3 cut(s)	269, 312, 321
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	2 cut(s)	267, 310
FauI	CCCGC	1 cut(s)	156
Fnu4HI	GCNGC	6 cut(s)	38, 41, 97, 119, 240, 263
FokI	GGATG	1 cut(s)	295
FriOI	GRGCYC	2 cut(s)	111, 186
Fsp4HI	GCNGC	6 cut(s)	38, 41, 97, 119, 240, 263
GlaI	GCGC	4 cut(s)	83, 117, 122, 243
GluI	GCNGC	6 cut(s)	38, 41, 97, 119, 240, 263
HaeII	RGCGCY	2 cut(s)	85, 124
HaeIII	GGCC	3 cut(s)	37, 234, 334
HapII	CCGG	3 cut(s)	152, 236, 275
HgaI	GACGC	3 cut(s)	110, 207, 224
HhaI	GCGC	4 cut(s)	84, 118, 123, 244
Hin1I	GRCGYC	2 cut(s)	102, 291
Hin1II	CATG	2 cut(s)	271, 314
Hin6I	GCGC	4 cut(s)	82, 116, 121, 242
HinP1I	GCGC	4 cut(s)	82, 116, 121, 242
HpaII	CCGG	3 cut(s)	152, 236, 275
Hpy188I	TCNGA	4 cut(s)	13, 49, 169, 330
Hpy188III	TCNNGA	2 cut(s)	173, 256
Hpy99I	CGWCG	4 cut(s)	104, 218, 223, 293
HpyCH4IV	ACGT	1 cut(s)	291
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 115, 268, 331
HpyF3I	CTNAG	2 cut(s)	46, 124
HpySE526I	ACGT	1 cut(s)	291
Hsp92I	GRCGYC	2 cut(s)	102, 291
Hsp92II	CATG	2 cut(s)	271, 314
HspAI	GCGC	4 cut(s)	82, 116, 121, 242
Kzo9I	GATC	3 cut(s)	13, 169, 285
LmnI	GCTCC	3 cut(s)	114, 141, 276
LpnPI	CCDG	8 cut(s)	65, 165, 199, 249, 288, 301, 324, 348
Lsp1109I	GCAGC	2 cut(s)	52, 274
LweI	GCATC	1 cut(s)	338
MaeII	ACGT	1 cut(s)	291
MalI	GATC	3 cut(s)	15, 171, 287
MboI	GATC	3 cut(s)	13, 169, 285
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	2 cut(s)	111, 186
MluI	ACGCGT	1 cut(s)	216
MroXI	GAANNNNTTC	1 cut(s)	251
MspI	CCGG	3 cut(s)	152, 236, 275
MspR9I	CCNGG	2 cut(s)	236, 275
MteI	GCGCNGCGC	1 cut(s)	119
MvnI	CGCG	6 cut(s)	99, 118, 213, 218, 244, 257
MwoI	GCNNNNNNNGC	4 cut(s)	88, 115, 268, 331
NciI	CCSGG	2 cut(s)	236, 275
NdeII	GATC	3 cut(s)	13, 169, 285
NlaIII	CATG	2 cut(s)	271, 314
NlaIV	GGNNCC	2 cut(s)	6, 171
NmeAIII	GCCGAG	1 cut(s)	130
NruI	TCGCGA	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	273
PkrI	GCNGC	6 cut(s)	39, 42, 98, 120, 241, 264
Psp124BI	GAGCTC	1 cut(s)	111
PspN4I	GGNNCC	2 cut(s)	6, 171
PspPI	GGNCC	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	169
RruI	TCGCGA	1 cut(s)	257
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SacI	GAGCTC	1 cut(s)	111
SatI	GCNGC	6 cut(s)	38, 41, 97, 119, 240, 263
Sau3AI	GATC	3 cut(s)	13, 169, 285
Sau96I	GGNCC	1 cut(s)	233
ScrFI	CCNGG	2 cut(s)	236, 275
SduI	GDGCHC	2 cut(s)	111, 186
SetI	ASST	7 cut(s)	45, 72, 111, 210, 228, 267, 294
SfaNI	GCATC	1 cut(s)	338
SsiI	CCGC	9 cut(s)	19, 38, 61, 97, 118, 149, 211, 239, 244
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	2 cut(s)	234, 273
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	2 cut(s)	221, 288
TauI	GCSGC	4 cut(s)	40, 99, 121, 242
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	2 cut(s)	40, 262
TspGWI	ACGGA	1 cut(s)	15
TspRI	CASTG	1 cut(s)	202
XmnI	GAANNNNTTC	1 cut(s)	251
ZraI	GACGTC	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.