RLG00000008584

snRNA import into nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0007499
Physical Location & Seq
Forward (+)
32597423 .. 32598800
1378 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008584

Sequence Viewer

Length: 1095 bp
ATGTCACCTTCTTCCGATCTCCTCCGCCGTCCGTTCAAGAGGCCACTGCTCTCAGACCAGCAAAGGCGCAGAGATCTCTCTCTGAAGCGTCAAGAGCAAAGCCGTGATTCTCAGCTCCACGCCCGCCGCGTAACCTCCGCACTCCTCTCCCTCCCTCCAGAACCTGGAGCCTCCTCGACGGAGCACTACTCCGACTTCCACCTTGCCTCCGAGGTCGCTTCTATGATTCTCAAAGGAGGCCTAGAGGCTCGAAAGTGGTTCCAAAAGCAGCTCATGCTTCCCGAGTGGATGATCGACGTCCCTCATCGCTTGCCCCAAGACTGGTTTGTATTAGCCAGGCCAGCCGGGGAACGCTGCCTGGTTGTTTCATACGACGGAACCACCATCAGTAGGAGACGAAACGGCACCGTTCTTCATCGTTTCCCGTCTGCTTTACCTGATGGTTGCTGCAGGACCAAAGCACAACCTTCCTGTTCTATACTAGACTGTATATTTCACGAGATGGACCAGACTTATTATGTCATTGACATGTTGTGCTGGAGAGATTACTCTTTGTATGATTGCACGGCTGAGTTTAGGTTTTTCTGGTTGAAGTCTAAGCTAGCTGAGACCCGTGCTTGCGACCCTCCATCATATTATCATAGCATAACACCCTTGGCCTTGGTTTGGAAGGATCAGAACTGTAGTAAATATGTTGTTGACACAGATAATGAAGGAAAGGTCCCAAGCCATCAGCAGATAGTTTTGGAGCTGCAACGTGATGGAAAAGTGACTACATCTGATAATCCTCCCGTTGTATTTGGTTGCTTAGGTTTGGACTTGATACAGAAGTTGGGAACATCGCAGTCAGGATGTCTTCTTCGTTTTGCTATTGGTGACGGGGGATTGACCATTGTGGATGGGAAGCTTGAGAGGGCAGATTTACATTACCTTGGCAAGTCCAACCGGGCACGTGCATTTGCAGATAGTTACTCCAAAATTATGTTTCAAAGTATGGTTCGAGGATCTTCTCTTAAAATTGATGATCTGGTAGCAGCAATCAGTTCATGCGACGATGGAGCAAACGGACCTGATGTTGAGATGACGGATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
No domains found.

Protein Analysis

365

Amino Acids

41.01

Weight (kDa)

7.08

Isoelectric Point (pI)

57.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPN1_m3Gcap_bd PF21974 90 - 208 2.6e-39 Snurportin1, m3G cap-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 300
AccB1I GGYRCC 1 cut(s) 404
AccB7I CCANNNNNTGG 1 cut(s) 164
AccII CGCG 1 cut(s) 129
AciI CCGC 4 cut(s) 25, 124, 127, 138
AclWI GGATC 2 cut(s) 681, 1012
AcuI CTGAAG 1 cut(s) 104
AcvI CACGTG 1 cut(s) 953
AcyI GRCGYC 1 cut(s) 297
AfiI CCNNNNNNNGG 4 cut(s) 164, 321, 390, 666
AflIII ACRYGT 1 cut(s) 528
AgsI TTSAA 3 cut(s) 37, 592, 989
AjnI CCWGG 3 cut(s) 163, 335, 357
AluBI AGCT 6 cut(s) 115, 271, 601, 605, 751, 907
AluI AGCT 6 cut(s) 115, 271, 601, 605, 751, 907
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 2 cut(s) 388, 602
AlwI GGATC 2 cut(s) 681, 1012
AlwNI CAGNNNCTG 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 281
AoxI GGCC 4 cut(s) 41, 238, 338, 657
ApeKI GCWGC 5 cut(s) 268, 354, 447, 751, 1034
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 4 cut(s) 453, 505, 721, 1067
AsuC2I CCSGG 2 cut(s) 346, 947
AsuHPI GGTGA 1 cut(s) 887
AsuNHI GCTAGC 1 cut(s) 601
AvaI CYCGRG 1 cut(s) 281
AvaII GGWCC 4 cut(s) 453, 505, 721, 1067
BaeGI GKGCMC 1 cut(s) 952
BaeI ACNNNNGTAYC 2 cut(s) 815, 848
BanI GGYRCC 1 cut(s) 404
BauI CACGAG 1 cut(s) 497
BbrPI CACGTG 1 cut(s) 953
BbsI GAAGAC 1 cut(s) 848
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 5 cut(s) 280, 341, 434, 738, 1046
BccI CCATC 9 cut(s) 392, 434, 496, 637, 738, 755, 893, 1049, 1082
BceAI ACGGC 4 cut(s) 12, 87, 418, 582
BciT130I CCWGG 3 cut(s) 165, 337, 359
BcnI CCSGG 2 cut(s) 346, 947
BcoDI GTCTC 2 cut(s) 388, 602
BfaI CTAG 3 cut(s) 242, 482, 602
BfmI CTRYAG 2 cut(s) 448, 682
BglII AGATCT 1 cut(s) 73
BisI GCNGC 6 cut(s) 127, 269, 355, 448, 752, 1035
BlsI GCNGC 6 cut(s) 128, 270, 356, 449, 753, 1036
Bme1390I CCNGG 5 cut(s) 165, 337, 346, 359, 947
Bme18I GGWCC 4 cut(s) 453, 505, 721, 1067
BmeT110I CYCGRG 1 cut(s) 281
BmgT120I GGNCC 4 cut(s) 453, 505, 721, 1067
BmiI GGNNCC 5 cut(s) 169, 260, 379, 406, 723
BmrFI CCNGG 5 cut(s) 165, 337, 346, 359, 947
BmtI GCTAGC 1 cut(s) 605
BpiI GAAGAC 1 cut(s) 848
BplI GAGNNNNNCTC 2 cut(s) 173, 205
BpmI CTGGAG 3 cut(s) 141, 186, 559
Bpu10I CCTNAGC 1 cut(s) 808
BpuEI CTTGAG 1 cut(s) 929
BpuMI CCSGG 2 cut(s) 346, 947
BsaAI YACGTR 1 cut(s) 953
BsaHI GRCGYC 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 602
BsaJI CCNNGG 5 cut(s) 210, 345, 654, 660, 931
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 4 cut(s) 164, 321, 390, 666
Bse1I ACTGG 1 cut(s) 326
BseBI CCWGG 3 cut(s) 165, 337, 359
BseDI CCNNGG 5 cut(s) 210, 345, 654, 660, 931
BseGI GGATG 4 cut(s) 294, 857, 904, 1093
BseLI CCNNNNNNNGG 4 cut(s) 164, 321, 390, 666
BseMII CTCAG 4 cut(s) 66, 125, 561, 597
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 3 cut(s) 11, 134, 163
BseSI GKGCMC 1 cut(s) 952
BseXI GCAGC 5 cut(s) 280, 341, 434, 738, 1046
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 4 cut(s) 43, 240, 340, 659
BshNI GGYRCC 1 cut(s) 404
BsiHKAI GWGCWC 1 cut(s) 186
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 2 cut(s) 345, 946
BslFI GGGAC 2 cut(s) 284, 707
BslI CCNNNNNNNGG 4 cut(s) 164, 321, 390, 666
BsmAI GTCTC 2 cut(s) 388, 602
BsmBI CGTCTC 1 cut(s) 388
BsmFI GGGAC 2 cut(s) 284, 707
BsnI GGCC 4 cut(s) 43, 240, 340, 659
Bso31I GGTCTC 1 cut(s) 602
BsoBI CYCGRG 1 cut(s) 281
Bsp1286I GDGCHC 2 cut(s) 186, 952
Bsp143I GATC 6 cut(s) 16, 73, 291, 673, 1004, 1024
BspACI CCGC 4 cut(s) 25, 124, 127, 138
BspANI GGCC 4 cut(s) 43, 240, 340, 659
BspCNI CTCAG 4 cut(s) 65, 124, 562, 598
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 5 cut(s) 169, 260, 379, 406, 723
BspMAI CTGCAG 1 cut(s) 452
BspOI GCTAGC 1 cut(s) 605
BspPI GGATC 2 cut(s) 681, 1012
BspT107I GGYRCC 1 cut(s) 404
BspTNI GGTCTC 1 cut(s) 602
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 5 cut(s) 210, 345, 654, 660, 931
BssMI GATC 6 cut(s) 16, 73, 291, 673, 1004, 1024
BssNI GRCGYC 1 cut(s) 297
BssSI CACGAG 1 cut(s) 497
BssT1I CCWWGG 3 cut(s) 654, 660, 931
Bst2BI CACGAG 1 cut(s) 497
Bst2UI CCWGG 3 cut(s) 165, 337, 359
Bst4CI ACNGT 3 cut(s) 409, 488, 683
BstACI GRCGYC 1 cut(s) 297
BstAPI GCANNNNNTGC 1 cut(s) 274
BstBAI YACGTR 1 cut(s) 953
BstC8I GCNNGC 5 cut(s) 124, 311, 342, 603, 619
BstDEI CTNAG 6 cut(s) 52, 111, 570, 597, 606, 808
BstF5I GGATG 4 cut(s) 294, 857, 904, 1093
BstFNI CGCG 1 cut(s) 129
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 6 cut(s) 19, 76, 294, 676, 1007, 1027
BstMAI GTCTC 2 cut(s) 388, 602
BstMBI GATC 6 cut(s) 16, 73, 291, 673, 1004, 1024
BstMWI GCNNNNNNNGC 3 cut(s) 94, 274, 341
BstNI CCWGG 3 cut(s) 165, 337, 359
BstNSI RCATGY 1 cut(s) 532
BstSCI CCNGG 5 cut(s) 163, 335, 344, 357, 945
BstSFI CTRYAG 2 cut(s) 448, 682
BstSLI GKGCMC 1 cut(s) 952
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 5 cut(s) 280, 341, 434, 738, 1046
BstV2I GAAGAC 1 cut(s) 848
BstX2I RGATCY 2 cut(s) 73, 1004
BstYI RGATCY 2 cut(s) 73, 1004
BsuRI GGCC 4 cut(s) 43, 240, 340, 659
BtgZI GCGATG 2 cut(s) 290, 825
BtsCI GGATG 4 cut(s) 294, 857, 904, 1093
BtsI GCAGTG 1 cut(s) 44
BtsIMutI CAGTG 1 cut(s) 44
Cac8I GCNNGC 5 cut(s) 124, 311, 342, 603, 619
CaiI CAGNNNCTG 1 cut(s) 164
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 4 cut(s) 453, 505, 721, 1067
CseI GACGC 1 cut(s) 77
CviAII CATG 3 cut(s) 274, 529, 1047
DdeI CTNAG 6 cut(s) 52, 111, 570, 597, 606, 808
DpnI GATC 6 cut(s) 18, 75, 293, 675, 1006, 1026
DpnII GATC 6 cut(s) 16, 73, 291, 673, 1004, 1024
EciI GGCGGA 1 cut(s) 14
Eco130I CCWWGG 3 cut(s) 654, 660, 931
Eco147I AGGCCT 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 602
Eco47I GGWCC 4 cut(s) 453, 505, 721, 1067
Eco57I CTGAAG 1 cut(s) 104
Eco72I CACGTG 1 cut(s) 953
Eco88I CYCGRG 1 cut(s) 281
EcoO109I RGGNCCY 1 cut(s) 721
EcoRII CCWGG 3 cut(s) 163, 335, 357
EcoT14I CCWWGG 3 cut(s) 654, 660, 931
ErhI CCWWGG 3 cut(s) 654, 660, 931
Esp3I CGTCTC 1 cut(s) 388
FaeI CATG 3 cut(s) 277, 532, 1050
FaqI GGGAC 2 cut(s) 284, 707
FatI CATG 3 cut(s) 273, 528, 1046
FauI CCCGC 1 cut(s) 131
Fnu4HI GCNGC 6 cut(s) 127, 269, 355, 448, 752, 1035
FokI GGATG 3 cut(s) 301, 864, 911
Fsp4HI GCNGC 6 cut(s) 127, 269, 355, 448, 752, 1035
FspBI CTAG 3 cut(s) 242, 482, 602
GlaI GCGC 1 cut(s) 68
GluI GCNGC 6 cut(s) 127, 269, 355, 448, 752, 1035
GsuI CTGGAG 3 cut(s) 141, 186, 559
HaeIII GGCC 4 cut(s) 43, 240, 340, 659
HapII CCGG 2 cut(s) 345, 946
HgaI GACGC 1 cut(s) 77
HhaI GCGC 1 cut(s) 69
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 3 cut(s) 277, 532, 1050
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HincII GTYRAC 1 cut(s) 700
HindII GTYRAC 1 cut(s) 700
HindIII AAGCTT 1 cut(s) 905
HinfI GANTC 2 cut(s) 107, 226
HpaII CCGG 2 cut(s) 345, 946
HphI GGTGA 1 cut(s) 887
Hpy166II GTNNAC 1 cut(s) 700
Hpy188I TCNGA 7 cut(s) 16, 55, 84, 193, 211, 678, 781
Hpy188III TCNNGA 6 cut(s) 37, 92, 158, 281, 497, 849
Hpy8I GTNNAC 1 cut(s) 700
Hpy99I CGWCG 4 cut(s) 181, 299, 377, 1055
HpyAV CCTTC 4 cut(s) 18, 477, 664, 707
HpyCH4III ACNGT 3 cut(s) 409, 488, 683
HpyCH4IV ACGT 3 cut(s) 297, 757, 952
HpyCH4V TGCA 5 cut(s) 450, 564, 754, 956, 962
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 274, 341
HpyF3I CTNAG 6 cut(s) 52, 111, 570, 597, 606, 808
HpySE526I ACGT 3 cut(s) 297, 757, 952
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 3 cut(s) 277, 532, 1050
HspAI GCGC 1 cut(s) 67
Kzo9I GATC 6 cut(s) 16, 73, 291, 673, 1004, 1024
LmnI GCTCC 5 cut(s) 120, 167, 181, 748, 1058
Lsp1109I GCAGC 5 cut(s) 280, 341, 434, 738, 1046
MaeI CTAG 3 cut(s) 242, 482, 602
MaeII ACGT 3 cut(s) 297, 757, 952
MaeIII GTNAC 5 cut(s) 3, 130, 769, 875, 968
MalI GATC 6 cut(s) 18, 75, 293, 675, 1006, 1026
MboI GATC 6 cut(s) 16, 73, 291, 673, 1004, 1024
MboII GAAGA 5 cut(s) 3, 404, 848, 851, 999
MflI RGATCY 2 cut(s) 73, 1004
MhlI GDGCHC 2 cut(s) 186, 952
MluCI AATT 2 cut(s) 978, 1017
MmeI TCCRAC 2 cut(s) 216, 966
MseI TTAA 2 cut(s) 1014, 1093
MslI CAYNNNNRTG 1 cut(s) 527
MspI CCGG 2 cut(s) 345, 946
MspR9I CCNGG 5 cut(s) 165, 337, 346, 359, 947
MvaI CCWGG 3 cut(s) 165, 337, 359
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 3 cut(s) 94, 274, 341
NciI CCSGG 2 cut(s) 346, 947
NdeII GATC 6 cut(s) 16, 73, 291, 673, 1004, 1024
NheI GCTAGC 1 cut(s) 601
NlaIII CATG 3 cut(s) 277, 532, 1050
NlaIV GGNNCC 5 cut(s) 169, 260, 379, 406, 723
NmuCI GTSAC 3 cut(s) 3, 769, 875
NspI RCATGY 1 cut(s) 532
PceI AGGCCT 1 cut(s) 240
PciI ACATGT 1 cut(s) 528
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PfeI GAWTC 2 cut(s) 107, 226
PflMI CCANNNNNTGG 1 cut(s) 164
PkrI GCNGC 6 cut(s) 128, 270, 356, 449, 753, 1036
PmaCI CACGTG 1 cut(s) 953
PmlI CACGTG 1 cut(s) 953
Ppu21I YACGTR 1 cut(s) 953
PpuMI RGGWCCY 1 cut(s) 721
PscI ACATGT 1 cut(s) 528
Psp5II RGGWCCY 1 cut(s) 721
Psp6I CCWGG 3 cut(s) 163, 335, 357
PspCI CACGTG 1 cut(s) 953
PspGI CCWGG 3 cut(s) 163, 335, 357
PspN4I GGNNCC 5 cut(s) 169, 260, 379, 406, 723
PspPI GGNCC 4 cut(s) 453, 505, 721, 1067
PspPPI RGGWCCY 1 cut(s) 721
PstI CTGCAG 1 cut(s) 452
PstNI CAGNNNCTG 1 cut(s) 164
PsuI RGATCY 2 cut(s) 73, 1004
RseI CAYNNNNRTG 1 cut(s) 527
SaqAI TTAA 2 cut(s) 1014, 1093
SatI GCNGC 6 cut(s) 127, 269, 355, 448, 752, 1035
Sau3AI GATC 6 cut(s) 16, 73, 291, 673, 1004, 1024
Sau96I GGNCC 4 cut(s) 453, 505, 721, 1067
ScrFI CCNGG 5 cut(s) 165, 337, 346, 359, 947
SduI GDGCHC 2 cut(s) 186, 952
SfcI CTRYAG 2 cut(s) 448, 682
SinI GGWCC 4 cut(s) 453, 505, 721, 1067
SmiMI CAYNNNNRTG 1 cut(s) 527
SmlI CTYRAG 1 cut(s) 908
SmoI CTYRAG 1 cut(s) 908
Sse9I AATT 2 cut(s) 978, 1017
SseBI AGGCCT 1 cut(s) 240
SsiI CCGC 4 cut(s) 25, 124, 127, 138
SspMI CTAG 3 cut(s) 242, 482, 602
StuI AGGCCT 1 cut(s) 240
StyD4I CCNGG 5 cut(s) 163, 335, 344, 357, 945
StyI CCWWGG 3 cut(s) 654, 660, 931
TaaI ACNGT 3 cut(s) 409, 488, 683
TaiI ACGT 3 cut(s) 300, 760, 955
TaqI TCGA 4 cut(s) 176, 250, 294, 1000
TasI AATT 2 cut(s) 978, 1017
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 2 cut(s) 107, 226
Tru1I TTAA 2 cut(s) 1014, 1093
Tru9I TTAA 2 cut(s) 1014, 1093
TscAI CASTG 1 cut(s) 51
TseFI GTSAC 3 cut(s) 3, 769, 875
TseI GCWGC 5 cut(s) 268, 354, 447, 751, 1034
Tsp45I GTSAC 3 cut(s) 3, 769, 875
TspDTI ATGAA 4 cut(s) 357, 404, 726, 1035
TspGWI ACGGA 4 cut(s) 21, 194, 390, 1080
TspRI CASTG 1 cut(s) 51
Van91I CCANNNNNTGG 1 cut(s) 164
VpaK11BI GGWCC 4 cut(s) 453, 505, 721, 1067
XceI RCATGY 1 cut(s) 532
XspI CTAG 3 cut(s) 242, 482, 602
ZraI GACGTC 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.