Rh7CG384500

snRNA import into nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0007499
Physical Location & Seq
Forward (+)
48533390 .. 48536016
2627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG384500.1

Sequence Viewer

Length: 729 bp
ATGAGATGGACCAGGACTTATTATGTCATTGACATGTTGGGCTGGAGAGATTACTCTTTGTATGATTGCACGGCTGAGTTTAGGTTTTTCTGGTTGAAGTCTAATCTAGCCGAGACCCGTGCTTGCGACCCTCCATCATATTATCATAGGTATAGATTTAGCTTGGTTCCTTGGTACACCTGTGATCTCACTGCTCTACACACAGCATATACCGGAGCGGTACCTTACGTAAAGGATGGTCTAATGTTTTATAACAAACATGCACATTATCAACCCGGCATAACACCCTTGGCCTTGGTTTGGAAGGATCAGAACTGTAGTAAATATGTTGTTGACACAGATAATGAAGGAAAGGTCCCAAGCCATCAGCAGATAGTTTTGGAGCTGCAACGTGATGGAAAAGTGACTACAGCTGATAATCCTCCCGTTGTATTTGGTTTCTTAGGTTTGGGCTTGATACAGAAGTTGGGAACATTGCAGTCAGGATGTCTTCTTCGTTTTGCTATTGGTGACGGGGGATTGACCATTGTGGATGGGAAGCTTGAGAAGGCAGATTTACATTACCTTGGCAAGTCCAACCGGGCACGTGCATTTGCAGATAGTTACTCCAAAATTATCTTTCAAAATATGGTTCGAGGATCTTCTCTTAAAATTGATGATCTGATAGCAGCAATCAGTTCATCCGACCATGGAGCAAACGGACCTGATGTTGAGATGATGGATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

27.29

Weight (kDa)

6.64

Isoelectric Point (pI)

28.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPN1_m3Gcap_bd PF21974 4 - 98 7e-25 Snurportin1, m3G cap-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 252
Acc65I GGTACC 1 cut(s) 220
AccB1I GGYRCC 1 cut(s) 220
AccBSI CCGCTC 1 cut(s) 218
AciI CCGC 1 cut(s) 218
AclWI GGATC 2 cut(s) 315, 646
AcvI CACGTG 1 cut(s) 587
AfaI GTAC 2 cut(s) 176, 222
AfiI CCNNNNNNNGG 1 cut(s) 300
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 2 cut(s) 97, 623
AjnI CCWGG 1 cut(s) 11
AluBI AGCT 4 cut(s) 162, 385, 413, 541
AluI AGCT 4 cut(s) 162, 385, 413, 541
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 2 cut(s) 315, 646
AoxI GGCC 1 cut(s) 291
ApeKI GCWGC 2 cut(s) 385, 668
Asp718I GGTACC 1 cut(s) 220
AspS9I GGNCC 3 cut(s) 9, 355, 701
AsuC2I CCSGG 2 cut(s) 276, 581
AsuHPI GGTGA 1 cut(s) 521
AvaII GGWCC 3 cut(s) 9, 355, 701
BaeGI GKGCMC 1 cut(s) 586
BaeI ACNNNNGTAYC 4 cut(s) 166, 199, 449, 482
BanI GGYRCC 1 cut(s) 220
BbrPI CACGTG 1 cut(s) 587
BbsI GAAGAC 1 cut(s) 482
BbvI GCAGC 2 cut(s) 372, 680
BccI CCATC 7 cut(s) 142, 230, 372, 389, 527, 712, 716
BceAI ACGGC 1 cut(s) 87
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 1 cut(s) 13
BcnI CCSGG 2 cut(s) 276, 581
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 2 cut(s) 316, 408
BisI GCNGC 2 cut(s) 386, 669
BlsI GCNGC 2 cut(s) 387, 670
Bme1390I CCNGG 3 cut(s) 13, 276, 581
Bme18I GGWCC 3 cut(s) 9, 355, 701
BmgT120I GGNCC 3 cut(s) 9, 355, 701
BmiI GGNNCC 3 cut(s) 168, 222, 357
BmrFI CCNGG 3 cut(s) 13, 276, 581
BpiI GAAGAC 1 cut(s) 482
BpmI CTGGAG 1 cut(s) 64
BpuEI CTTGAG 1 cut(s) 563
BpuMI CCSGG 2 cut(s) 276, 581
BsaAI YACGTR 2 cut(s) 229, 587
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 5 cut(s) 170, 288, 294, 565, 688
BsaWI WCCGGW 1 cut(s) 212
Bsc4I CCNNNNNNNGG 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 473
BseBI CCWGG 1 cut(s) 13
BseDI CCNNGG 5 cut(s) 170, 288, 294, 565, 688
BseGI GGATG 5 cut(s) 241, 491, 538, 680, 727
BseLI CCNNNNNNNGG 1 cut(s) 300
BseMI GCAATG 1 cut(s) 473
BseMII CTCAG 1 cut(s) 66
BseSI GKGCMC 1 cut(s) 586
BseXI GCAGC 2 cut(s) 372, 680
BshFI GGCC 1 cut(s) 293
BshNI GGYRCC 1 cut(s) 220
BsiSI CCGG 3 cut(s) 213, 276, 580
BslFI GGGAC 1 cut(s) 341
BslI CCNNNNNNNGG 1 cut(s) 300
BsmAI GTCTC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 341
BsnI GGCC 1 cut(s) 293
Bso31I GGTCTC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 586
Bsp143I GATC 4 cut(s) 184, 307, 638, 658
Bsp19I CCATGG 1 cut(s) 688
BspACI CCGC 1 cut(s) 218
BspANI GGCC 1 cut(s) 293
BspCNI CTCAG 1 cut(s) 67
BspLI GGNNCC 3 cut(s) 168, 222, 357
BspPI GGATC 2 cut(s) 315, 646
BspT107I GGYRCC 1 cut(s) 220
BspTNI GGTCTC 1 cut(s) 107
BsrBI CCGCTC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 473
BssECI CCNNGG 5 cut(s) 170, 288, 294, 565, 688
BssMI GATC 4 cut(s) 184, 307, 638, 658
BssT1I CCWWGG 5 cut(s) 170, 288, 294, 565, 688
Bst2UI CCWGG 1 cut(s) 13
Bst4CI ACNGT 1 cut(s) 317
BstBAI YACGTR 2 cut(s) 229, 587
BstC8I GCNNGC 1 cut(s) 124
BstDEI CTNAG 2 cut(s) 75, 442
BstDSI CCRYGG 1 cut(s) 688
BstF5I GGATG 5 cut(s) 241, 491, 538, 680, 727
BstKTI GATC 4 cut(s) 187, 310, 641, 661
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 4 cut(s) 184, 307, 638, 658
BstNI CCWGG 1 cut(s) 13
BstNSI RCATGY 2 cut(s) 37, 263
BstSCI CCNGG 3 cut(s) 11, 274, 579
BstSFI CTRYAG 2 cut(s) 316, 408
BstSLI GKGCMC 1 cut(s) 586
BstSNI TACGTA 1 cut(s) 229
BstV1I GCAGC 2 cut(s) 372, 680
BstV2I GAAGAC 1 cut(s) 482
BstX2I RGATCY 1 cut(s) 638
BstYI RGATCY 1 cut(s) 638
BsuRI GGCC 1 cut(s) 293
BtgI CCRYGG 1 cut(s) 688
BtsCI GGATG 5 cut(s) 241, 491, 538, 680, 727
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 124
Cfr13I GGNCC 3 cut(s) 9, 355, 701
Csp6I GTAC 2 cut(s) 175, 221
CviAII CATG 3 cut(s) 34, 260, 689
CviQI GTAC 2 cut(s) 175, 221
DdeI CTNAG 2 cut(s) 75, 442
DpnI GATC 4 cut(s) 186, 309, 640, 660
DpnII GATC 4 cut(s) 184, 307, 638, 658
Eco105I TACGTA 1 cut(s) 229
Eco130I CCWWGG 5 cut(s) 170, 288, 294, 565, 688
Eco31I GGTCTC 1 cut(s) 107
Eco47I GGWCC 3 cut(s) 9, 355, 701
Eco72I CACGTG 1 cut(s) 587
EcoO109I RGGNCCY 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 11
EcoT14I CCWWGG 5 cut(s) 170, 288, 294, 565, 688
ErhI CCWWGG 5 cut(s) 170, 288, 294, 565, 688
FaeI CATG 3 cut(s) 37, 263, 692
FaqI GGGAC 1 cut(s) 341
FatI CATG 3 cut(s) 33, 259, 688
Fnu4HI GCNGC 2 cut(s) 386, 669
FokI GGATG 4 cut(s) 248, 498, 545, 667
Fsp4HI GCNGC 2 cut(s) 386, 669
FspBI CTAG 1 cut(s) 107
GluI GCNGC 2 cut(s) 386, 669
GsuI CTGGAG 1 cut(s) 64
HaeIII GGCC 1 cut(s) 293
HapII CCGG 3 cut(s) 213, 276, 580
Hin1II CATG 3 cut(s) 37, 263, 692
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 539
HpaII CCGG 3 cut(s) 213, 276, 580
HphI GGTGA 1 cut(s) 521
Hpy166II GTNNAC 2 cut(s) 177, 334
Hpy188I TCNGA 3 cut(s) 312, 663, 685
Hpy188III TCNNGA 1 cut(s) 483
Hpy8I GTNNAC 2 cut(s) 177, 334
HpyAV CCTTC 3 cut(s) 298, 341, 541
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4IV ACGT 3 cut(s) 228, 391, 586
HpyCH4V TGCA 6 cut(s) 69, 263, 388, 478, 590, 596
HpyF3I CTNAG 2 cut(s) 75, 442
HpySE526I ACGT 3 cut(s) 228, 391, 586
Hsp92II CATG 3 cut(s) 37, 263, 692
KpnI GGTACC 1 cut(s) 224
Kzo9I GATC 4 cut(s) 184, 307, 638, 658
LmnI GCTCC 3 cut(s) 215, 382, 692
LpnPI CCDG 9 cut(s) 25, 28, 76, 193, 226, 289, 468, 593, 717
Lsp1109I GCAGC 2 cut(s) 372, 680
MaeI CTAG 1 cut(s) 107
MaeII ACGT 3 cut(s) 228, 391, 586
MaeIII GTNAC 3 cut(s) 403, 509, 602
MalI GATC 4 cut(s) 186, 309, 640, 660
MbiI CCGCTC 1 cut(s) 218
MboI GATC 4 cut(s) 184, 307, 638, 658
MboII GAAGA 3 cut(s) 482, 485, 633
MflI RGATCY 1 cut(s) 638
MhlI GDGCHC 1 cut(s) 586
MluCI AATT 2 cut(s) 612, 651
MmeI TCCRAC 2 cut(s) 600, 708
MnlI CCTC 3 cut(s) 141, 432, 629
MseI TTAA 2 cut(s) 648, 727
MslI CAYNNNNRTG 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 413
MspI CCGG 3 cut(s) 213, 276, 580
MspR9I CCNGG 3 cut(s) 13, 276, 581
MvaI CCWGG 1 cut(s) 13
NciI CCSGG 2 cut(s) 276, 581
NcoI CCATGG 1 cut(s) 688
NdeII GATC 4 cut(s) 184, 307, 638, 658
NlaIII CATG 3 cut(s) 37, 263, 692
NlaIV GGNNCC 3 cut(s) 168, 222, 357
NmeAIII GCCGAG 1 cut(s) 136
NmuCI GTSAC 2 cut(s) 403, 509
NspI RCATGY 2 cut(s) 37, 263
PciI ACATGT 1 cut(s) 33
PkrI GCNGC 2 cut(s) 387, 670
PmaCI CACGTG 1 cut(s) 587
PmlI CACGTG 1 cut(s) 587
Ppu21I YACGTR 2 cut(s) 229, 587
PpuMI RGGWCCY 1 cut(s) 355
PscI ACATGT 1 cut(s) 33
PsiI TTATAA 1 cut(s) 252
Psp5II RGGWCCY 1 cut(s) 355
Psp6I CCWGG 1 cut(s) 11
PspCI CACGTG 1 cut(s) 587
PspGI CCWGG 1 cut(s) 11
PspN4I GGNNCC 3 cut(s) 168, 222, 357
PspPI GGNCC 3 cut(s) 9, 355, 701
PspPPI RGGWCCY 1 cut(s) 355
PsuI RGATCY 1 cut(s) 638
PvuII CAGCTG 1 cut(s) 413
RsaI GTAC 2 cut(s) 176, 222
RsaNI GTAC 2 cut(s) 175, 221
RseI CAYNNNNRTG 1 cut(s) 32
SaqAI TTAA 2 cut(s) 648, 727
SatI GCNGC 2 cut(s) 386, 669
Sau3AI GATC 4 cut(s) 184, 307, 638, 658
Sau96I GGNCC 3 cut(s) 9, 355, 701
ScrFI CCNGG 3 cut(s) 13, 276, 581
SduI GDGCHC 1 cut(s) 586
SfcI CTRYAG 2 cut(s) 316, 408
SinI GGWCC 3 cut(s) 9, 355, 701
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
SnaBI TACGTA 1 cut(s) 229
Sse9I AATT 2 cut(s) 612, 651
SsiI CCGC 1 cut(s) 218
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 3 cut(s) 11, 274, 579
StyI CCWWGG 5 cut(s) 170, 288, 294, 565, 688
TaaI ACNGT 1 cut(s) 317
TaiI ACGT 3 cut(s) 231, 394, 589
TaqI TCGA 1 cut(s) 634
TasI AATT 2 cut(s) 612, 651
Tru1I TTAA 2 cut(s) 648, 727
Tru9I TTAA 2 cut(s) 648, 727
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 2 cut(s) 403, 509
TseI GCWGC 2 cut(s) 385, 668
Tsp45I GTSAC 2 cut(s) 403, 509
TspDTI ATGAA 2 cut(s) 360, 669
TspGWI ACGGA 1 cut(s) 714
TspRI CASTG 1 cut(s) 196
VpaK11BI GGWCC 3 cut(s) 9, 355, 701
XceI RCATGY 2 cut(s) 37, 263
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.