Rorug04G0082900

snRNA import into nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0007499
Physical Location & Seq
Forward (+)
12624154 .. 12624724
571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0082900.1

Sequence Viewer

Length: 282 bp
ATGGCTGACCAGATGGCTACATACCCCTCTCCGGAAATCCAATACGGGAGCACCTTGAGTTGTTCATTGACAATGGCACCTCGGATCTTCGAGAGGGGCAATCAAAGAGGACAAGAAAACAAAACCCTGGAGTTCCTTCCGGGATTCTCAGATGAGTTTCGAGCATCTGACTTAACCAAGGAAATTGTATTTGGAGAAATAGAATCGCCACTTGCAAGAATGTTGCATAAAATGGGACAGAAGCTGCCACAAGCAGCTGCAGTTGTCGTCAACTCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.36

Weight (kDa)

5.29

Isoelectric Point (pI)

54.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 76
AccIII TCCGGA 1 cut(s) 31
AclWI GGATC 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 31
AjnI CCWGG 1 cut(s) 126
AjuI GAANNNNNNNTTGG 2 cut(s) 174, 206
AluBI AGCT 2 cut(s) 244, 257
AluI AGCT 2 cut(s) 244, 257
Alw21I GWGCWC 1 cut(s) 53
AlwI GGATC 1 cut(s) 92
AlwNI CAGNNNCTG 1 cut(s) 244
Aor13HI TCCGGA 1 cut(s) 31
ApeKI GCWGC 3 cut(s) 244, 254, 257
AsuC2I CCSGG 1 cut(s) 141
BanI GGYRCC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 53
BbvI GCAGC 3 cut(s) 231, 244, 266
BccI CCATC 1 cut(s) 7
BciT130I CCWGG 1 cut(s) 128
BcnI CCSGG 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 258
BisI GCNGC 3 cut(s) 245, 255, 258
BlsI GCNGC 3 cut(s) 246, 256, 259
Bme1390I CCNGG 2 cut(s) 128, 141
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 2 cut(s) 128, 141
BmsI GCATC 1 cut(s) 173
BpmI CTGGAG 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 141
BsaJI CCNNGG 3 cut(s) 80, 126, 177
BsaWI WCCGGW 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 31
BseAI TCCGGA 1 cut(s) 31
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 3 cut(s) 80, 126, 177
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 162
BseXI GCAGC 3 cut(s) 231, 244, 266
BshNI GGYRCC 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 53
BsiSI CCGG 2 cut(s) 32, 140
BslFI GGGAC 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 53
Bsp13I TCCGGA 1 cut(s) 31
Bsp143I GATC 1 cut(s) 84
BspCNI CTCAG 1 cut(s) 161
BspEI TCCGGA 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 78
BspMAI CTGCAG 1 cut(s) 262
BspPI GGATC 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 76
BssECI CCNNGG 3 cut(s) 80, 126, 177
BssMI GATC 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 148
BstKTI GATC 1 cut(s) 87
BstMBI GATC 1 cut(s) 84
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 2 cut(s) 126, 139
BstSFI CTRYAG 1 cut(s) 258
BstV1I GCAGC 3 cut(s) 231, 244, 266
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
CaiI CAGNNNCTG 1 cut(s) 244
CviJI RGCY 4 cut(s) 5, 17, 244, 257
CviKI_1 RGCY 4 cut(s) 5, 17, 244, 257
DdeI CTNAG 1 cut(s) 148
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaiI YATR 2 cut(s) 22, 228
FaqI GGGAC 1 cut(s) 249
Fnu4HI GCNGC 3 cut(s) 245, 255, 258
Fsp4HI GCNGC 3 cut(s) 245, 255, 258
GluI GCNGC 3 cut(s) 245, 255, 258
GsuI CTGGAG 1 cut(s) 149
HapII CCGG 2 cut(s) 32, 140
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 2 cut(s) 144, 203
HpaII CCGG 2 cut(s) 32, 140
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 3 cut(s) 84, 151, 169
Hpy188III TCNNGA 2 cut(s) 32, 91
Hpy8I GTNNAC 1 cut(s) 271
HpyAV CCTTC 1 cut(s) 146
HpyCH4V TGCA 3 cut(s) 215, 226, 260
HpyF3I CTNAG 1 cut(s) 148
Kpn2I TCCGGA 1 cut(s) 31
Kzo9I GATC 1 cut(s) 84
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 5 cut(s) 23, 45, 113, 140, 153
Lsp1109I GCAGC 3 cut(s) 231, 244, 266
LweI GCATC 1 cut(s) 173
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 1 cut(s) 79
MflI RGATCY 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 53
MluCI AATT 1 cut(s) 183
MnlI CCTC 4 cut(s) 37, 87, 90, 101
MroI TCCGGA 1 cut(s) 31
MseI TTAA 1 cut(s) 173
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 2 cut(s) 32, 140
MspR9I CCNGG 2 cut(s) 128, 141
MvaI CCWGG 1 cut(s) 128
NciI CCSGG 1 cut(s) 141
NdeII GATC 1 cut(s) 84
NlaIV GGNNCC 1 cut(s) 78
PfeI GAWTC 2 cut(s) 144, 203
PfoI TCCNGGA 1 cut(s) 139
PkrI GCNGC 3 cut(s) 246, 256, 259
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 78
PstI CTGCAG 1 cut(s) 262
PstNI CAGNNNCTG 1 cut(s) 244
PsuI RGATCY 1 cut(s) 84
PvuII CAGCTG 1 cut(s) 257
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 3 cut(s) 245, 255, 258
Sau3AI GATC 1 cut(s) 84
ScrFI CCNGG 2 cut(s) 128, 141
SduI GDGCHC 1 cut(s) 53
SetI ASST 4 cut(s) 56, 82, 246, 259
SfaNI GCATC 1 cut(s) 173
SfcI CTRYAG 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
Sse9I AATT 1 cut(s) 183
StyD4I CCNGG 2 cut(s) 126, 139
StyI CCWWGG 1 cut(s) 177
TaqI TCGA 2 cut(s) 90, 160
TasI AATT 1 cut(s) 183
TfiI GAWTC 2 cut(s) 144, 203
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TseI GCWGC 3 cut(s) 244, 254, 257
TspDTI ATGAA 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.