Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0007499

Physical Location & Seq

Genomic Coordinates Reverse (-)

25872774 .. 25873244

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG144900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCTTGCGATCGCCATCCATCATATTATCATAGGTATAGATTCAGCTTGGTTCCTTGGTATACCTGTGATCTCACTGCTCTACACACAGCATATATATACCGGAGCGGTACCTTACGTAAAGGATAGTCTAATGTTTTATAACAAACATGCGCATTATCAACCCGTCATAACACCCTTGGCCTTGGTTTGGAAGGATGAGAACTGTAGTAAATATTTTTTTGATACAGATAATGAGGGAAAGGTCCCATGCCATCAGCAGATAGTTTTGGAGCTGCAACGTGATGGAAAAGTGACCACATCTGATAATCCTCCCGTTGTATTTGGTTGCTTAGGTTTGGACTTGATACAGAAGTTGGGAACATTGCAGTCAGGATGTCTTCTTCGTTTTGCTATTGGTGATGGGGGATTGACCATTATGGATGGGAAGCTTGAGAAGGCGGATTTACATTACCTTAGCAAGTCCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.36

Weight (kDa)

6.12

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007499)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g11820
rosa_chinensis	RchiOBHm_Chr4g0407901 RchiOBHm_Chr4g0407951 RchiOBHm_Chr4g0409241
rosa_laevigata	RLG00000008584 RLG00000008680
rosa_multiflora	Rmu_co8062950.1_g000001 Rmu_co8330257.1_g000001 Rmu_sc0002073.1_g000022 Rmu_sc0002377.1_g000017
rosa_roxburghii	Rroxscaffold_5G00352510
rosa_rugosa	Rorug04G0082800 Rorug04G0082900 Rorug04G0091400
rosa_samantha	Rh4AG147600 Rh4AG154700 Rh4BG144900 Rh4BG152400 Rh4CG154100 Rh4CG163800 Rh4DG147500 Rh7AG365900 Rh7CG384500
rosa_wichuraiana	Rw0G019660 Rw4G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	141
Acc16I	TGCGCA	1 cut(s)	153
Acc65I	GGTACC	1 cut(s)	109
AccB1I	GGYRCC	1 cut(s)	109
AccBSI	CCGCTC	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	61
AciI	CCGC	2 cut(s)	107, 440
AfaI	GTAC	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	189
AluBI	AGCT	3 cut(s)	47, 274, 430
AluI	AGCT	3 cut(s)	47, 274, 430
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	1 cut(s)	274
AsiSI	GCGATCGC	1 cut(s)	12
Asp718I	GGTACC	1 cut(s)	109
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	244
AsuHPI	GGTGA	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	244
BaeI	ACNNNNGTAYC	2 cut(s)	338, 371
BanI	GGYRCC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	371
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	6 cut(s)	23, 27, 261, 278, 395, 416
BfaI	CTAG	1 cut(s)	469
BfmI	CTRYAG	1 cut(s)	205
BisI	GCNGC	1 cut(s)	275
BlsI	GCNGC	1 cut(s)	276
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	3 cut(s)	53, 111, 246
BpiI	GAAGAC	1 cut(s)	371
Bpu10I	CCTNAGC	2 cut(s)	331, 455
BpuEI	CTTGAG	1 cut(s)	452
BsaAI	YACGTR	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	14
BsaJI	CCNNGG	3 cut(s)	55, 177, 183
BsaWI	WCCGGW	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse3DI	GCAATG	1 cut(s)	362
Bse8I	GATNNNNATC	1 cut(s)	14
BseDI	CCNNGG	3 cut(s)	55, 177, 183
BseGI	GGATG	4 cut(s)	15, 202, 380, 427
BseJI	GATNNNNATC	1 cut(s)	14
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMI	GCAATG	1 cut(s)	362
BseXI	GCAGC	1 cut(s)	261
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	182
BshNI	GGYRCC	1 cut(s)	109
BsiEI	CGRYCG	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	182
Bsp143I	GATC	2 cut(s)	9, 69
BspACI	CCGC	2 cut(s)	107, 440
BspANI	GGCC	1 cut(s)	182
BspLI	GGNNCC	3 cut(s)	53, 111, 246
BspT107I	GGYRCC	1 cut(s)	109
BsrBI	CCGCTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	362
BssECI	CCNNGG	3 cut(s)	55, 177, 183
BssMI	GATC	2 cut(s)	9, 69
BssNAI	GTATAC	1 cut(s)	62
BssT1I	CCWWGG	3 cut(s)	55, 177, 183
Bst1107I	GTATAC	1 cut(s)	62
Bst4CI	ACNGT	1 cut(s)	206
BstBAI	YACGTR	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	331, 455
BstF5I	GGATG	4 cut(s)	15, 202, 380, 427
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	2 cut(s)	12, 72
BstMBI	GATC	2 cut(s)	9, 69
BstMCI	CGRYCG	1 cut(s)	12
BstNSI	RCATGY	1 cut(s)	152
BstSFI	CTRYAG	1 cut(s)	205
BstSNI	TACGTA	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	261
BstV2I	GAAGAC	1 cut(s)	371
BstZ17I	GTATAC	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	182
BtsCI	GGATG	4 cut(s)	15, 202, 380, 427
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	74
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	110
CviAII	CATG	2 cut(s)	149, 249
CviJI	RGCY	4 cut(s)	47, 182, 274, 430
CviKI_1	RGCY	4 cut(s)	47, 182, 274, 430
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	2 cut(s)	331, 455
DpnI	GATC	2 cut(s)	11, 71
DpnII	GATC	2 cut(s)	9, 69
EciI	GGCGGA	1 cut(s)	455
Eco105I	TACGTA	1 cut(s)	118
Eco130I	CCWWGG	3 cut(s)	55, 177, 183
Eco47I	GGWCC	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	244
EcoT14I	CCWWGG	3 cut(s)	55, 177, 183
ErhI	CCWWGG	3 cut(s)	55, 177, 183
FaeI	CATG	2 cut(s)	152, 252
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	2 cut(s)	148, 248
FblI	GTMKAC	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	275
FokI	GGATG	4 cut(s)	2, 209, 387, 434
Fsp4HI	GCNGC	1 cut(s)	275
FspAI	RTGCGCAY	1 cut(s)	153
FspBI	CTAG	1 cut(s)	469
FspI	TGCGCA	1 cut(s)	153
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	1 cut(s)	275
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	1 cut(s)	102
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	2 cut(s)	152, 252
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	1 cut(s)	62
Hpy188I	TCNGA	1 cut(s)	304
Hpy188III	TCNNGA	1 cut(s)	372
Hpy8I	GTNNAC	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	187, 430
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4IV	ACGT	2 cut(s)	117, 280
HpyCH4V	TGCA	2 cut(s)	277, 367
HpyF3I	CTNAG	2 cut(s)	331, 455
HpySE526I	ACGT	2 cut(s)	117, 280
Hsp92II	CATG	2 cut(s)	152, 252
HspAI	GCGC	1 cut(s)	152
KpnI	GGTACC	1 cut(s)	113
Kzo9I	GATC	2 cut(s)	9, 69
LmnI	GCTCC	2 cut(s)	104, 271
LpnPI	CCDG	3 cut(s)	78, 115, 357
Lsp1109I	GCAGC	1 cut(s)	261
MaeI	CTAG	1 cut(s)	469
MaeII	ACGT	2 cut(s)	117, 280
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	2 cut(s)	11, 71
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	2 cut(s)	9, 69
MboII	GAAGA	2 cut(s)	371, 374
MnlI	CCTC	2 cut(s)	229, 321
MspI	CCGG	1 cut(s)	102
NdeII	GATC	2 cut(s)	9, 69
NlaIII	CATG	2 cut(s)	152, 252
NlaIV	GGNNCC	3 cut(s)	53, 111, 246
NmuCI	GTSAC	1 cut(s)	292
NsbI	TGCGCA	1 cut(s)	153
NspI	RCATGY	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	276
Ple19I	CGATCG	1 cut(s)	12
Ppu21I	YACGTR	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	244
PsiI	TTATAA	1 cut(s)	141
Psp5II	RGGWCCY	1 cut(s)	244
PspN4I	GGNNCC	3 cut(s)	53, 111, 246
PspPI	GGNCC	1 cut(s)	244
PspPPI	RGGWCCY	1 cut(s)	244
PvuI	CGATCG	1 cut(s)	12
RgaI	GCGATCGC	1 cut(s)	12
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
SatI	GCNGC	1 cut(s)	275
Sau3AI	GATC	2 cut(s)	9, 69
Sau96I	GGNCC	1 cut(s)	244
SfaAI	GCGATCGC	1 cut(s)	12
SfcI	CTRYAG	1 cut(s)	205
SgfI	GCGATCGC	1 cut(s)	12
SinI	GGWCC	1 cut(s)	244
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
SnaBI	TACGTA	1 cut(s)	118
SsiI	CCGC	2 cut(s)	107, 440
SspI	AATATT	1 cut(s)	215
SspMI	CTAG	1 cut(s)	469
StyI	CCWWGG	3 cut(s)	55, 177, 183
TaaI	ACNGT	1 cut(s)	206
TaiI	ACGT	2 cut(s)	120, 283
TfiI	GAWTC	1 cut(s)	41
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	1 cut(s)	274
Tsp45I	GTSAC	1 cut(s)	292
TspRI	CASTG	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	244
XceI	RCATGY	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	61
XspI	CTAG	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.