Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8330257.1

Orthogroup ID

OG0007499

Physical Location & Seq

Genomic Coordinates Forward (+)

6 .. 728

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8330257.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atggaccagacttattatgtcattgacatgttgtgctggagagattactctttgtatgattgcacggctgagtttaggtttttttggttaaagtctaagctagccgagacccgggtttgcgaccctccatcatattatcataggtatagattcagcttggttcctcggtatacctgtgatctcactgccctacatacagcatataccggagcggtaccttacgtaaaggatggtctaatgttttataataaacatgcacattatcaacccggcataacacccttggccttggtttggaaggatcagaactgtagtaaatatgttgttgacacaaataatgaaggaaaggtcccaagccatcagcagatagttttggagctgcaacgtgatggaaaagtgactacatctgataatcctcccgttgtatttggttgcttaggtttggacttgatacagaagttgggaacattgcagtcagcatgtcttcttcgttttgctcttggtgacggaggattgaccattgtggatgggaagcttgagagggcagatttacattaccttggcaagtccaaccgggcacgtgcatttgcagatagttactccaaaattatgtttcaaagtatggttcgaggatcttctcttaaaattgatgatctgatagcagcaattagttcatccgacgatggagcaaacggacctgatgttgagatgatggatggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

27.03

Weight (kDa)

6.05

Isoelectric Point (pI)

29.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007499)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g11820
rosa_chinensis	RchiOBHm_Chr4g0407901 RchiOBHm_Chr4g0407951 RchiOBHm_Chr4g0409241
rosa_laevigata	RLG00000008584 RLG00000008680
rosa_multiflora	Rmu_co8062950.1_g000001 Rmu_co8330257.1_g000001 Rmu_sc0002073.1_g000022 Rmu_sc0002377.1_g000017
rosa_roxburghii	Rroxscaffold_5G00352510
rosa_rugosa	Rorug04G0082800 Rorug04G0082900 Rorug04G0091400
rosa_samantha	Rh4AG147600 Rh4AG154700 Rh4BG144900 Rh4BG152400 Rh4CG154100 Rh4CG163800 Rh4DG147500 Rh7AG365900 Rh7CG384500
rosa_wichuraiana	Rw0G019660 Rw4G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	246
Acc65I	GGTACC	1 cut(s)	214
AccB1I	GGYRCC	1 cut(s)	214
AccBSI	CCGCTC	1 cut(s)	212
AccI	GTMKAC	1 cut(s)	170
AciI	CCGC	1 cut(s)	212
AclWI	GGATC	2 cut(s)	309, 640
AcvI	CACGTG	1 cut(s)	581
AfaI	GTAC	1 cut(s)	216
AfiI	CCNNNNNNNGG	2 cut(s)	111, 294
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	1 cut(s)	617
AluBI	AGCT	4 cut(s)	100, 156, 379, 535
AluI	AGCT	4 cut(s)	100, 156, 379, 535
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	2 cut(s)	309, 640
Ama87I	CYCGRG	1 cut(s)	111
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	2 cut(s)	379, 662
Asp718I	GGTACC	1 cut(s)	214
AspS9I	GGNCC	3 cut(s)	4, 349, 695
AsuC2I	CCSGG	4 cut(s)	112, 113, 270, 575
AsuHPI	GGTGA	1 cut(s)	515
AsuNHI	GCTAGC	1 cut(s)	100
AvaI	CYCGRG	1 cut(s)	111
AvaII	GGWCC	3 cut(s)	4, 349, 695
BaeGI	GKGCMC	1 cut(s)	580
BaeI	ACNNNNGTAYC	2 cut(s)	443, 476
BanI	GGYRCC	1 cut(s)	214
BbrPI	CACGTG	1 cut(s)	581
BbsI	GAAGAC	1 cut(s)	476
BbvI	GCAGC	2 cut(s)	366, 674
BccI	CCATC	8 cut(s)	136, 224, 366, 383, 521, 677, 706, 710
BceAI	ACGGC	1 cut(s)	81
BcnI	CCSGG	4 cut(s)	112, 113, 270, 575
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	310
BisI	GCNGC	2 cut(s)	380, 663
BlsI	GCNGC	2 cut(s)	381, 664
Bme1390I	CCNGG	4 cut(s)	112, 113, 270, 575
Bme18I	GGWCC	3 cut(s)	4, 349, 695
BmeT110I	CYCGRG	1 cut(s)	111
BmgT120I	GGNCC	3 cut(s)	4, 349, 695
BmiI	GGNNCC	3 cut(s)	162, 216, 351
BmrFI	CCNGG	4 cut(s)	112, 113, 270, 575
BmtI	GCTAGC	1 cut(s)	104
BpiI	GAAGAC	1 cut(s)	476
BpmI	CTGGAG	1 cut(s)	58
Bpu10I	CCTNAGC	1 cut(s)	436
BpuEI	CTTGAG	1 cut(s)	557
BpuMI	CCSGG	4 cut(s)	112, 113, 270, 575
BsaAI	YACGTR	2 cut(s)	223, 581
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	5 cut(s)	111, 164, 282, 288, 559
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 294
Bse3DI	GCAATG	1 cut(s)	467
BseDI	CCNNGG	5 cut(s)	111, 164, 282, 288, 559
BseGI	GGATG	4 cut(s)	235, 532, 674, 721
BseLI	CCNNNNNNNGG	2 cut(s)	111, 294
BseMI	GCAATG	1 cut(s)	467
BseMII	CTCAG	1 cut(s)	60
BseSI	GKGCMC	1 cut(s)	580
BseXI	GCAGC	2 cut(s)	366, 674
BshFI	GGCC	1 cut(s)	287
BshNI	GGYRCC	1 cut(s)	214
BsiHKCI	CYCGRG	1 cut(s)	111
BsiSI	CCGG	4 cut(s)	112, 207, 270, 574
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	2 cut(s)	111, 294
BsmAI	GTCTC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	335
BsnI	GGCC	1 cut(s)	287
Bso31I	GGTCTC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	580
Bsp143I	GATC	4 cut(s)	178, 301, 632, 652
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	3 cut(s)	162, 216, 351
BspOI	GCTAGC	1 cut(s)	104
BspPI	GGATC	2 cut(s)	309, 640
BspT107I	GGYRCC	1 cut(s)	214
BspTNI	GGTCTC	1 cut(s)	101
BsrBI	CCGCTC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	467
BssECI	CCNNGG	5 cut(s)	111, 164, 282, 288, 559
BssMI	GATC	4 cut(s)	178, 301, 632, 652
BssNAI	GTATAC	1 cut(s)	171
BssT1I	CCWWGG	3 cut(s)	282, 288, 559
Bst1107I	GTATAC	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	311
BstBAI	YACGTR	2 cut(s)	223, 581
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	3 cut(s)	69, 96, 436
BstF5I	GGATG	4 cut(s)	235, 532, 674, 721
BstKTI	GATC	4 cut(s)	181, 304, 635, 655
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	4 cut(s)	178, 301, 632, 652
BstNSI	RCATGY	3 cut(s)	31, 257, 483
BstSCI	CCNGG	4 cut(s)	110, 111, 268, 573
BstSFI	CTRYAG	1 cut(s)	310
BstSLI	GKGCMC	1 cut(s)	580
BstSNI	TACGTA	1 cut(s)	223
BstV1I	GCAGC	2 cut(s)	366, 674
BstV2I	GAAGAC	1 cut(s)	476
BstX2I	RGATCY	1 cut(s)	632
BstYI	RGATCY	1 cut(s)	632
BstZ17I	GTATAC	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	287
BtsCI	GGATG	4 cut(s)	235, 532, 674, 721
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	102
Cfr13I	GGNCC	3 cut(s)	4, 349, 695
Cfr9I	CCCGGG	1 cut(s)	111
Csp6I	GTAC	1 cut(s)	215
CviAII	CATG	3 cut(s)	28, 254, 480
CviJI	RGCY	8 cut(s)	68, 100, 104, 156, 287, 357, 379, 535
CviKI_1	RGCY	8 cut(s)	68, 100, 104, 156, 287, 357, 379, 535
CviQI	GTAC	1 cut(s)	215
DdeI	CTNAG	3 cut(s)	69, 96, 436
DpnI	GATC	4 cut(s)	180, 303, 634, 654
DpnII	GATC	4 cut(s)	178, 301, 632, 652
Eco105I	TACGTA	1 cut(s)	223
Eco130I	CCWWGG	3 cut(s)	282, 288, 559
Eco31I	GGTCTC	1 cut(s)	101
Eco47I	GGWCC	3 cut(s)	4, 349, 695
Eco72I	CACGTG	1 cut(s)	581
Eco88I	CYCGRG	1 cut(s)	111
EcoO109I	RGGNCCY	1 cut(s)	349
EcoT14I	CCWWGG	3 cut(s)	282, 288, 559
ErhI	CCWWGG	3 cut(s)	282, 288, 559
FaeI	CATG	3 cut(s)	31, 257, 483
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	3 cut(s)	27, 253, 479
FblI	GTMKAC	1 cut(s)	170
Fnu4HI	GCNGC	2 cut(s)	380, 663
FokI	GGATG	3 cut(s)	242, 539, 661
Fsp4HI	GCNGC	2 cut(s)	380, 663
FspBI	CTAG	1 cut(s)	101
GluI	GCNGC	2 cut(s)	380, 663
GsuI	CTGGAG	1 cut(s)	58
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	4 cut(s)	112, 207, 270, 574
Hin1II	CATG	3 cut(s)	31, 257, 483
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	1 cut(s)	150
HpaII	CCGG	4 cut(s)	112, 207, 270, 574
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	2 cut(s)	171, 328
Hpy188I	TCNGA	4 cut(s)	306, 409, 657, 679
Hpy8I	GTNNAC	2 cut(s)	171, 328
Hpy99I	CGWCG	1 cut(s)	683
HpyAV	CCTTC	2 cut(s)	292, 335
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4IV	ACGT	3 cut(s)	222, 385, 580
HpyCH4V	TGCA	6 cut(s)	63, 257, 382, 472, 584, 590
HpyF3I	CTNAG	3 cut(s)	69, 96, 436
HpySE526I	ACGT	3 cut(s)	222, 385, 580
Hsp92II	CATG	3 cut(s)	31, 257, 483
KpnI	GGTACC	1 cut(s)	218
Kzo9I	GATC	4 cut(s)	178, 301, 632, 652
LmnI	GCTCC	3 cut(s)	209, 376, 686
LpnPI	CCDG	8 cut(s)	20, 22, 125, 187, 220, 283, 587, 711
Lsp1109I	GCAGC	2 cut(s)	366, 674
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	3 cut(s)	222, 385, 580
MaeIII	GTNAC	3 cut(s)	397, 503, 596
MalI	GATC	4 cut(s)	180, 303, 634, 654
MbiI	CCGCTC	1 cut(s)	212
MboI	GATC	4 cut(s)	178, 301, 632, 652
MboII	GAAGA	3 cut(s)	476, 479, 627
MflI	RGATCY	1 cut(s)	632
MhlI	GDGCHC	1 cut(s)	580
MluCI	AATT	3 cut(s)	606, 645, 666
MmeI	TCCRAC	2 cut(s)	594, 702
MnlI	CCTC	6 cut(s)	135, 174, 426, 503, 534, 623
MseI	TTAA	3 cut(s)	89, 642, 721
MslI	CAYNNNNRTG	1 cut(s)	26
MspI	CCGG	4 cut(s)	112, 207, 270, 574
MspR9I	CCNGG	4 cut(s)	112, 113, 270, 575
NciI	CCSGG	4 cut(s)	112, 113, 270, 575
NdeII	GATC	4 cut(s)	178, 301, 632, 652
NheI	GCTAGC	1 cut(s)	100
NlaIII	CATG	3 cut(s)	31, 257, 483
NlaIV	GGNNCC	3 cut(s)	162, 216, 351
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	2 cut(s)	397, 503
NspI	RCATGY	3 cut(s)	31, 257, 483
PciI	ACATGT	1 cut(s)	27
PfeI	GAWTC	1 cut(s)	150
PkrI	GCNGC	2 cut(s)	381, 664
PmaCI	CACGTG	1 cut(s)	581
PmlI	CACGTG	1 cut(s)	581
Ppu21I	YACGTR	2 cut(s)	223, 581
PpuMI	RGGWCCY	1 cut(s)	349
PscI	ACATGT	1 cut(s)	27
PsiI	TTATAA	1 cut(s)	246
Psp5II	RGGWCCY	1 cut(s)	349
PspCI	CACGTG	1 cut(s)	581
PspN4I	GGNNCC	3 cut(s)	162, 216, 351
PspPI	GGNCC	3 cut(s)	4, 349, 695
PspPPI	RGGWCCY	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	632
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	3 cut(s)	89, 642, 721
SatI	GCNGC	2 cut(s)	380, 663
Sau3AI	GATC	4 cut(s)	178, 301, 632, 652
Sau96I	GGNCC	3 cut(s)	4, 349, 695
ScrFI	CCNGG	4 cut(s)	112, 113, 270, 575
SduI	GDGCHC	1 cut(s)	580
SfcI	CTRYAG	1 cut(s)	310
SinI	GGWCC	3 cut(s)	4, 349, 695
SmaI	CCCGGG	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
SnaBI	TACGTA	1 cut(s)	223
Sse9I	AATT	3 cut(s)	606, 645, 666
SsiI	CCGC	1 cut(s)	212
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	4 cut(s)	110, 111, 268, 573
StyI	CCWWGG	3 cut(s)	282, 288, 559
TaaI	ACNGT	1 cut(s)	311
TaiI	ACGT	3 cut(s)	225, 388, 583
TaqI	TCGA	1 cut(s)	628
TasI	AATT	3 cut(s)	606, 645, 666
TfiI	GAWTC	1 cut(s)	150
Tru1I	TTAA	3 cut(s)	89, 642, 721
Tru9I	TTAA	3 cut(s)	89, 642, 721
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	2 cut(s)	397, 503
TseI	GCWGC	2 cut(s)	379, 662
Tsp45I	GTSAC	2 cut(s)	397, 503
TspDTI	ATGAA	2 cut(s)	354, 663
TspGWI	ACGGA	2 cut(s)	522, 708
TspMI	CCCGGG	1 cut(s)	111
TspRI	CASTG	1 cut(s)	190
VpaK11BI	GGWCC	3 cut(s)	4, 349, 695
XceI	RCATGY	3 cut(s)	31, 257, 483
XmaI	CCCGGG	1 cut(s)	111
XmiI	GTMKAC	1 cut(s)	170
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.