Rmu_sc0002377.1_g000017

snRNA import into nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002377.1
OG0007499
Physical Location & Seq
Forward (+)
121751 .. 122974
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002377.1_g000017.1.cds

Sequence Viewer

Length: 1224 bp
atgtcaccttcttccgatctgctccgccgtccgttcaagaggccactgctctcagaccagcaaaggcgcagagatctttctctgaagcgtcaagagcaaagccgtgattctcagctccacgcccgccgtgtatcctccgcactcctctccctccctctagaacccggagcctcctcgacggagtactactccgacttgcaccttgcctccgaggtcgcttctaagattctcaaaggaggcctagagggtcgaaagtggtttcaaaagaagctcatgcttcccgagtggatgatcgacgtccctcatcgcttgccccaagactggtttgtattagccaggccagccggggaacgctgcctggttgtttcatacggcggaaccaccgtcagtaggagacgaaacggcaccgttcttcatcgtttcccgtctgctttatccaatggttgctgcaggaccaaagcacaaccttcctgttctatactagactgtatatttcacgagatggaccagacttattatgtcattgacatgttgtgctggagagattactctttgtatgattgcacggctgagtttaggtttttttggttaaagtctaagctagccgagacccgggtttgcgaccctccatcatattatcataggtatagattcagcttggttcctcggtatacctgtgatctcactgccctacatacagcatataccggagcggtaccttacgtaaaggatggtctaatgttttataataaacatgcacattatcaacccggcataacacccttggccttggtttggaaggatcagaactgtagtaaatatgttgttgacacaaataatgaaggaaaggtcccaagccatcagcagatagttttggagctgcaacgtgatggaaaagtgactacatctgataatcctcccgttgtatttggttgcttaggtttggacttgatacagaagttgggaacattgcagtcagcatgtcttcttcgttttgctcttggtgacggaggattgaccattgtggatgggaagcttgagagggcagatttacattaccttggcaagtccaaccgggcacgtgcatttgcagatagttactccaaaattatgtttcaaagtatggttcgaggatcttctcttaaaattgatgatctgatagcagcaattagttcatccgacgatggagcaaacggacctgatgttgagatgatggatggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
No domains found.

Protein Analysis

407

Amino Acids

46.01

Weight (kDa)

8.8

Isoelectric Point (pI)

50.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 747
AatII GACGTC 1 cut(s) 300
Acc65I GGTACC 1 cut(s) 715
AccB1I GGYRCC 2 cut(s) 404, 715
AccBSI CCGCTC 1 cut(s) 713
AccI GTMKAC 1 cut(s) 671
AciI CCGC 5 cut(s) 25, 124, 138, 375, 713
AclWI GGATC 2 cut(s) 810, 1141
AcuI CTGAAG 1 cut(s) 104
AcvI CACGTG 1 cut(s) 1082
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 2 cut(s) 185, 717
AfiI CCNNNNNNNGG 4 cut(s) 321, 390, 612, 795
AflIII ACRYGT 1 cut(s) 528
AgsI TTSAA 3 cut(s) 37, 263, 1118
AjnI CCWGG 2 cut(s) 335, 357
AluBI AGCT 6 cut(s) 115, 271, 601, 657, 880, 1036
AluI AGCT 6 cut(s) 115, 271, 601, 657, 880, 1036
Alw26I GTCTC 2 cut(s) 388, 602
AlwI GGATC 2 cut(s) 810, 1141
Ama87I CYCGRG 2 cut(s) 281, 612
AoxI GGCC 4 cut(s) 41, 238, 338, 786
ApeKI GCWGC 4 cut(s) 354, 447, 880, 1163
Asp718I GGTACC 1 cut(s) 715
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 4 cut(s) 453, 505, 850, 1196
AsuC2I CCSGG 6 cut(s) 165, 346, 613, 614, 771, 1076
AsuHPI GGTGA 1 cut(s) 1016
AsuNHI GCTAGC 1 cut(s) 601
AvaI CYCGRG 2 cut(s) 281, 612
AvaII GGWCC 4 cut(s) 453, 505, 850, 1196
BaeGI GKGCMC 1 cut(s) 1081
BaeI ACNNNNGTAYC 2 cut(s) 944, 977
BanI GGYRCC 2 cut(s) 404, 715
BauI CACGAG 1 cut(s) 497
BbrPI CACGTG 1 cut(s) 1082
BbsI GAAGAC 1 cut(s) 977
BbvI GCAGC 4 cut(s) 341, 434, 867, 1175
BccI CCATC 9 cut(s) 496, 637, 725, 867, 884, 1022, 1178, 1207, 1211
BceAI ACGGC 6 cut(s) 12, 87, 111, 388, 418, 582
BciT130I CCWGG 2 cut(s) 337, 359
BciVI GTATCC 1 cut(s) 142
BcnI CCSGG 6 cut(s) 165, 346, 613, 614, 771, 1076
BcoDI GTCTC 2 cut(s) 388, 602
BfaI CTAG 4 cut(s) 158, 242, 482, 602
BfmI CTRYAG 2 cut(s) 448, 811
BfuI GTATCC 1 cut(s) 142
BglII AGATCT 1 cut(s) 73
BisI GCNGC 4 cut(s) 355, 448, 881, 1164
BlsI GCNGC 4 cut(s) 356, 449, 882, 1165
BmcAI AGTACT 1 cut(s) 185
Bme1390I CCNGG 8 cut(s) 165, 337, 346, 359, 613, 614, 771, 1076
Bme18I GGWCC 4 cut(s) 453, 505, 850, 1196
BmeT110I CYCGRG 2 cut(s) 281, 612
BmgT120I GGNCC 4 cut(s) 453, 505, 850, 1196
BmiI GGNNCC 6 cut(s) 169, 379, 406, 663, 717, 852
BmrFI CCNGG 8 cut(s) 165, 337, 346, 359, 613, 614, 771, 1076
BmtI GCTAGC 1 cut(s) 605
BpiI GAAGAC 1 cut(s) 977
BplI GAGNNNNNCTC 2 cut(s) 173, 205
BpmI CTGGAG 1 cut(s) 559
Bpu10I CCTNAGC 1 cut(s) 937
BpuEI CTTGAG 1 cut(s) 1058
BpuMI CCSGG 6 cut(s) 165, 346, 613, 614, 771, 1076
BsaAI YACGTR 2 cut(s) 724, 1082
BsaHI GRCGYC 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 602
BsaJI CCNNGG 7 cut(s) 210, 345, 612, 665, 783, 789, 1060
BsaWI WCCGGW 1 cut(s) 707
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 4 cut(s) 321, 390, 612, 795
Bse1I ACTGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 968
BseBI CCWGG 2 cut(s) 337, 359
BseDI CCNNGG 7 cut(s) 210, 345, 612, 665, 783, 789, 1060
BseGI GGATG 5 cut(s) 294, 736, 1033, 1175, 1222
BseLI CCNNNNNNNGG 4 cut(s) 321, 390, 612, 795
BseMI GCAATG 1 cut(s) 968
BseMII CTCAG 3 cut(s) 66, 125, 561
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 2 cut(s) 134, 163
BseSI GKGCMC 1 cut(s) 1081
BseXI GCAGC 4 cut(s) 341, 434, 867, 1175
BshFI GGCC 4 cut(s) 43, 240, 340, 788
BshNI GGYRCC 2 cut(s) 404, 715
BsiHKCI CYCGRG 2 cut(s) 281, 612
BsiSI CCGG 6 cut(s) 165, 345, 613, 708, 771, 1075
BslFI GGGAC 2 cut(s) 284, 836
BslI CCNNNNNNNGG 4 cut(s) 321, 390, 612, 795
BsmAI GTCTC 2 cut(s) 388, 602
BsmBI CGTCTC 1 cut(s) 388
BsmFI GGGAC 2 cut(s) 284, 836
BsnI GGCC 4 cut(s) 43, 240, 340, 788
Bso31I GGTCTC 1 cut(s) 602
BsoBI CYCGRG 2 cut(s) 281, 612
Bsp1286I GDGCHC 1 cut(s) 1081
Bsp143I GATC 7 cut(s) 16, 73, 291, 679, 802, 1133, 1153
BspACI CCGC 5 cut(s) 25, 124, 138, 375, 713
BspANI GGCC 4 cut(s) 43, 240, 340, 788
BspCNI CTCAG 3 cut(s) 65, 124, 562
BspLI GGNNCC 6 cut(s) 169, 379, 406, 663, 717, 852
BspMAI CTGCAG 1 cut(s) 452
BspOI GCTAGC 1 cut(s) 605
BspPI GGATC 2 cut(s) 810, 1141
BspT107I GGYRCC 2 cut(s) 404, 715
BspTNI GGTCTC 1 cut(s) 602
BsrBI CCGCTC 1 cut(s) 713
BsrDI GCAATG 1 cut(s) 968
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 7 cut(s) 210, 345, 612, 665, 783, 789, 1060
BssMI GATC 7 cut(s) 16, 73, 291, 679, 802, 1133, 1153
BssNAI GTATAC 1 cut(s) 672
BssNI GRCGYC 1 cut(s) 297
BssSI CACGAG 1 cut(s) 497
BssT1I CCWWGG 3 cut(s) 783, 789, 1060
Bst1107I GTATAC 1 cut(s) 672
Bst2BI CACGAG 1 cut(s) 497
Bst2UI CCWGG 2 cut(s) 337, 359
Bst4CI ACNGT 4 cut(s) 385, 409, 488, 812
BstACI GRCGYC 1 cut(s) 297
BstBAI YACGTR 2 cut(s) 724, 1082
BstC8I GCNNGC 4 cut(s) 124, 311, 342, 603
BstDEI CTNAG 6 cut(s) 52, 111, 222, 570, 597, 937
BstF5I GGATG 5 cut(s) 294, 736, 1033, 1175, 1222
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 7 cut(s) 19, 76, 294, 682, 805, 1136, 1156
BstMAI GTCTC 2 cut(s) 388, 602
BstMBI GATC 7 cut(s) 16, 73, 291, 679, 802, 1133, 1153
BstMWI GCNNNNNNNGC 2 cut(s) 94, 341
BstNI CCWGG 2 cut(s) 337, 359
BstNSI RCATGY 3 cut(s) 532, 758, 984
BstSCI CCNGG 8 cut(s) 163, 335, 344, 357, 611, 612, 769, 1074
BstSFI CTRYAG 2 cut(s) 448, 811
BstSLI GKGCMC 1 cut(s) 1081
BstSNI TACGTA 1 cut(s) 724
BstV1I GCAGC 4 cut(s) 341, 434, 867, 1175
BstV2I GAAGAC 1 cut(s) 977
BstX2I RGATCY 2 cut(s) 73, 1133
BstYI RGATCY 2 cut(s) 73, 1133
BstZ17I GTATAC 1 cut(s) 672
BsuI GTATCC 1 cut(s) 142
BsuRI GGCC 4 cut(s) 43, 240, 340, 788
BtgZI GCGATG 1 cut(s) 290
BtsCI GGATG 5 cut(s) 294, 736, 1033, 1175, 1222
BtsI GCAGTG 2 cut(s) 44, 684
BtsIMutI CAGTG 2 cut(s) 44, 684
Cac8I GCNNGC 4 cut(s) 124, 311, 342, 603
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 4 cut(s) 453, 505, 850, 1196
Cfr9I CCCGGG 1 cut(s) 612
CseI GACGC 1 cut(s) 77
Csp6I GTAC 2 cut(s) 184, 716
CviAII CATG 4 cut(s) 274, 529, 755, 981
CviQI GTAC 2 cut(s) 184, 716
DdeI CTNAG 6 cut(s) 52, 111, 222, 570, 597, 937
DpnI GATC 7 cut(s) 18, 75, 293, 681, 804, 1135, 1155
DpnII GATC 7 cut(s) 16, 73, 291, 679, 802, 1133, 1153
EciI GGCGGA 2 cut(s) 14, 390
Eco105I TACGTA 1 cut(s) 724
Eco130I CCWWGG 3 cut(s) 783, 789, 1060
Eco147I AGGCCT 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 602
Eco47I GGWCC 4 cut(s) 453, 505, 850, 1196
Eco57I CTGAAG 1 cut(s) 104
Eco72I CACGTG 1 cut(s) 1082
Eco88I CYCGRG 2 cut(s) 281, 612
EcoO109I RGGNCCY 1 cut(s) 850
EcoRII CCWGG 2 cut(s) 335, 357
EcoT14I CCWWGG 3 cut(s) 783, 789, 1060
ErhI CCWWGG 3 cut(s) 783, 789, 1060
Esp3I CGTCTC 1 cut(s) 388
FaeI CATG 4 cut(s) 277, 532, 758, 984
FaqI GGGAC 2 cut(s) 284, 836
FatI CATG 4 cut(s) 273, 528, 754, 980
FauI CCCGC 1 cut(s) 131
FblI GTMKAC 1 cut(s) 671
Fnu4HI GCNGC 4 cut(s) 355, 448, 881, 1164
FokI GGATG 4 cut(s) 301, 743, 1040, 1162
Fsp4HI GCNGC 4 cut(s) 355, 448, 881, 1164
FspBI CTAG 4 cut(s) 158, 242, 482, 602
GlaI GCGC 1 cut(s) 68
GluI GCNGC 4 cut(s) 355, 448, 881, 1164
GsuI CTGGAG 1 cut(s) 559
HaeIII GGCC 4 cut(s) 43, 240, 340, 788
HapII CCGG 6 cut(s) 165, 345, 613, 708, 771, 1075
HgaI GACGC 1 cut(s) 77
HhaI GCGC 1 cut(s) 69
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 4 cut(s) 277, 532, 758, 984
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HincII GTYRAC 1 cut(s) 829
HindII GTYRAC 1 cut(s) 829
HindIII AAGCTT 1 cut(s) 1034
HinfI GANTC 3 cut(s) 107, 226, 651
HpaII CCGG 6 cut(s) 165, 345, 613, 708, 771, 1075
HphI GGTGA 1 cut(s) 1016
Hpy166II GTNNAC 2 cut(s) 672, 829
Hpy188I TCNGA 9 cut(s) 16, 55, 84, 193, 211, 807, 910, 1158, 1180
Hpy188III TCNNGA 5 cut(s) 37, 92, 158, 281, 497
Hpy8I GTNNAC 2 cut(s) 672, 829
Hpy99I CGWCG 3 cut(s) 181, 299, 1184
HpyAV CCTTC 4 cut(s) 18, 477, 793, 836
HpyCH4III ACNGT 4 cut(s) 385, 409, 488, 812
HpyCH4IV ACGT 4 cut(s) 297, 723, 886, 1081
HpyCH4V TGCA 8 cut(s) 199, 450, 564, 758, 883, 973, 1085, 1091
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 341
HpyF3I CTNAG 6 cut(s) 52, 111, 222, 570, 597, 937
HpySE526I ACGT 4 cut(s) 297, 723, 886, 1081
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 4 cut(s) 277, 532, 758, 984
HspAI GCGC 1 cut(s) 67
KpnI GGTACC 1 cut(s) 719
Kzo9I GATC 7 cut(s) 16, 73, 291, 679, 802, 1133, 1153
LmnI GCTCC 6 cut(s) 27, 120, 167, 710, 877, 1187
Lsp1109I GCAGC 4 cut(s) 341, 434, 867, 1175
MaeI CTAG 4 cut(s) 158, 242, 482, 602
MaeII ACGT 4 cut(s) 297, 723, 886, 1081
MaeIII GTNAC 4 cut(s) 3, 898, 1004, 1097
MalI GATC 7 cut(s) 18, 75, 293, 681, 804, 1135, 1155
MbiI CCGCTC 1 cut(s) 713
MboI GATC 7 cut(s) 16, 73, 291, 679, 802, 1133, 1153
MboII GAAGA 5 cut(s) 3, 404, 977, 980, 1128
MflI RGATCY 2 cut(s) 73, 1133
MhlI GDGCHC 1 cut(s) 1081
MluCI AATT 3 cut(s) 1107, 1146, 1167
MmeI TCCRAC 3 cut(s) 216, 1095, 1203
MseI TTAA 3 cut(s) 590, 1143, 1222
MslI CAYNNNNRTG 1 cut(s) 527
MspI CCGG 6 cut(s) 165, 345, 613, 708, 771, 1075
MspR9I CCNGG 8 cut(s) 165, 337, 346, 359, 613, 614, 771, 1076
MvaI CCWGG 2 cut(s) 337, 359
MwoI GCNNNNNNNGC 2 cut(s) 94, 341
NciI CCSGG 6 cut(s) 165, 346, 613, 614, 771, 1076
NdeII GATC 7 cut(s) 16, 73, 291, 679, 802, 1133, 1153
NheI GCTAGC 1 cut(s) 601
NlaIII CATG 4 cut(s) 277, 532, 758, 984
NlaIV GGNNCC 6 cut(s) 169, 379, 406, 663, 717, 852
NmeAIII GCCGAG 1 cut(s) 631
NmuCI GTSAC 3 cut(s) 3, 898, 1004
NspI RCATGY 3 cut(s) 532, 758, 984
PceI AGGCCT 1 cut(s) 240
PciI ACATGT 1 cut(s) 528
PfeI GAWTC 3 cut(s) 107, 226, 651
PkrI GCNGC 4 cut(s) 356, 449, 882, 1165
PmaCI CACGTG 1 cut(s) 1082
PmlI CACGTG 1 cut(s) 1082
Ppu21I YACGTR 2 cut(s) 724, 1082
PpuMI RGGWCCY 1 cut(s) 850
PscI ACATGT 1 cut(s) 528
PsiI TTATAA 1 cut(s) 747
Psp5II RGGWCCY 1 cut(s) 850
Psp6I CCWGG 2 cut(s) 335, 357
PspCI CACGTG 1 cut(s) 1082
PspGI CCWGG 2 cut(s) 335, 357
PspN4I GGNNCC 6 cut(s) 169, 379, 406, 663, 717, 852
PspPI GGNCC 4 cut(s) 453, 505, 850, 1196
PspPPI RGGWCCY 1 cut(s) 850
PstI CTGCAG 1 cut(s) 452
PsuI RGATCY 2 cut(s) 73, 1133
RsaI GTAC 2 cut(s) 185, 717
RsaNI GTAC 2 cut(s) 184, 716
RseI CAYNNNNRTG 1 cut(s) 527
SaqAI TTAA 3 cut(s) 590, 1143, 1222
SatI GCNGC 4 cut(s) 355, 448, 881, 1164
Sau3AI GATC 7 cut(s) 16, 73, 291, 679, 802, 1133, 1153
Sau96I GGNCC 4 cut(s) 453, 505, 850, 1196
ScaI AGTACT 1 cut(s) 185
ScrFI CCNGG 8 cut(s) 165, 337, 346, 359, 613, 614, 771, 1076
SduI GDGCHC 1 cut(s) 1081
SfcI CTRYAG 2 cut(s) 448, 811
SinI GGWCC 4 cut(s) 453, 505, 850, 1196
SmaI CCCGGG 1 cut(s) 614
SmiMI CAYNNNNRTG 1 cut(s) 527
SmlI CTYRAG 1 cut(s) 1037
SmoI CTYRAG 1 cut(s) 1037
SnaBI TACGTA 1 cut(s) 724
Sse9I AATT 3 cut(s) 1107, 1146, 1167
SseBI AGGCCT 1 cut(s) 240
SsiI CCGC 5 cut(s) 25, 124, 138, 375, 713
SspMI CTAG 4 cut(s) 158, 242, 482, 602
StuI AGGCCT 1 cut(s) 240
StyD4I CCNGG 8 cut(s) 163, 335, 344, 357, 611, 612, 769, 1074
StyI CCWWGG 3 cut(s) 783, 789, 1060
TaaI ACNGT 4 cut(s) 385, 409, 488, 812
TaiI ACGT 4 cut(s) 300, 726, 889, 1084
TaqI TCGA 4 cut(s) 176, 250, 294, 1129
TasI AATT 3 cut(s) 1107, 1146, 1167
TatI WGTACW 1 cut(s) 183
TfiI GAWTC 3 cut(s) 107, 226, 651
Tru1I TTAA 3 cut(s) 590, 1143, 1222
Tru9I TTAA 3 cut(s) 590, 1143, 1222
TscAI CASTG 2 cut(s) 51, 691
TseFI GTSAC 3 cut(s) 3, 898, 1004
TseI GCWGC 4 cut(s) 354, 447, 880, 1163
Tsp45I GTSAC 3 cut(s) 3, 898, 1004
TspDTI ATGAA 4 cut(s) 357, 404, 855, 1164
TspGWI ACGGA 4 cut(s) 21, 194, 1023, 1209
TspMI CCCGGG 1 cut(s) 612
TspRI CASTG 2 cut(s) 51, 691
VpaK11BI GGWCC 4 cut(s) 453, 505, 850, 1196
XbaI TCTAGA 1 cut(s) 157
XceI RCATGY 3 cut(s) 532, 758, 984
XmaI CCCGGG 1 cut(s) 612
XmiI GTMKAC 1 cut(s) 671
XspI CTAG 4 cut(s) 158, 242, 482, 602
ZraI GACGTC 1 cut(s) 298
ZrmI AGTACT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.