RLG00000008680

snRNA import into nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0007499
Physical Location & Seq
Forward (+)
34826566 .. 34827626
1061 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008680

Sequence Viewer

Length: 768 bp
ATGTCACCTTCTTCCGATCTCCGCCGCCGTCCGTTCAACAGGCCACTGCTTTCAAACCAGCAAAGGCGCAGAGATCTTTCTCTAAAGCAACAAGAGCAAAGCTGTGATTTTCAGCTCCATGCCCTTCGCGTAACCGCTACACTCCTCTCCCTCCCTCCAGAACCTGGAGCATCCTCGACGGAGTACTACTCCGACTCGCACCTTGGCGCCAAGGCCGCATCTAAGATTCTCAAAGGATGCCTAGAGACTCGAAAGTGGTTCCAAAAGAAGCTCATGCTTCCCGAATGGATGATCAACGTCCCTCATCGCTTGCCCCATGACTGGTTTGTGTTAGCTTGGTTGTTTCGTACAACGGAACCACCGTTAGTAAGAGACGAAACGGCACCGTTGTTCATCGTTTCCTGTCTGCTTTACCAGATGGTTGCTGCAGGACCAAAGGCCAACCTTCCTTTTAAGCTAGCCAAGACCCATGCTTGCAATCGCCATCCATCATATTATCATAGGTATAGATTCAGCTTGTTCCTTGATAATGAGGGAAAGGTCCCATGCCATCAGCAGATAGTTTTGGAGCTGCAACGTCATGGAAAAGTAACCACATCTGATAATCCTCCCATTGTATTTGGTTGCTTAGGTTTGGACTTGATACAGAAGTTGGGAACATTGCAGTCAGGATGTCTTCTTCGTTTTGCTATTGGTAATGGGGGATTGACCATTATGGATGGGAAGCTTGAGAAGGCGGATTTACATTACCTTGGCAAGTCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

28.99

Weight (kDa)

9.51

Isoelectric Point (pI)

58.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 206, 382
AccB7I CCANNNNNTGG 1 cut(s) 164
AccII CGCG 1 cut(s) 129
AciI CCGC 5 cut(s) 22, 25, 135, 216, 737
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 2 cut(s) 185, 349
AfiI CCNNNNNNNGG 2 cut(s) 164, 321
AgsI TTSAA 2 cut(s) 37, 54
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 8 cut(s) 102, 115, 271, 335, 457, 516, 571, 727
AluI AGCT 8 cut(s) 102, 115, 271, 335, 457, 516, 571, 727
Alw26I GTCTC 2 cut(s) 239, 366
AlwNI CAGNNNCTG 1 cut(s) 164
AoxI GGCC 3 cut(s) 41, 213, 438
ApeKI GCWGC 2 cut(s) 425, 571
AspLEI GCGC 2 cut(s) 69, 209
AspS9I GGNCC 2 cut(s) 431, 541
AsuNHI GCTAGC 1 cut(s) 457
AvaII GGWCC 2 cut(s) 431, 541
BaeI ACNNNNGTAYC 2 cut(s) 635, 668
BanI GGYRCC 2 cut(s) 206, 382
BbsI GAAGAC 1 cut(s) 668
BbvI GCAGC 2 cut(s) 412, 558
BccI CCATC 5 cut(s) 412, 492, 496, 558, 713
BceAI ACGGC 2 cut(s) 12, 396
BciT130I CCWGG 1 cut(s) 165
BclI TGATCA 1 cut(s) 291
BcoDI GTCTC 2 cut(s) 239, 366
BfaI CTAG 3 cut(s) 242, 458, 766
BfmI CTRYAG 1 cut(s) 426
BfoI RGCGCY 1 cut(s) 210
BglII AGATCT 1 cut(s) 73
BisI GCNGC 4 cut(s) 25, 216, 426, 572
BlsI GCNGC 4 cut(s) 26, 217, 427, 573
BmcAI AGTACT 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 165
Bme18I GGWCC 2 cut(s) 431, 541
BmgT120I GGNCC 2 cut(s) 431, 541
BmiI GGNNCC 5 cut(s) 208, 260, 357, 384, 543
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 3 cut(s) 179, 227, 227
BmtI GCTAGC 1 cut(s) 461
BpiI GAAGAC 1 cut(s) 668
BplI GAGNNNNNCTC 2 cut(s) 173, 205
BpmI CTGGAG 2 cut(s) 141, 186
Bpu10I CCTNAGC 1 cut(s) 628
BpuEI CTTGAG 1 cut(s) 749
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 3 cut(s) 202, 210, 751
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 321
Bse1I ACTGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 659
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 3 cut(s) 202, 210, 751
BseGI GGATG 6 cut(s) 170, 242, 294, 484, 677, 724
BseLI CCNNNNNNNGG 2 cut(s) 164, 321
BseMI GCAATG 1 cut(s) 659
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 2 cut(s) 412, 558
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 3 cut(s) 43, 215, 440
BshNI GGYRCC 2 cut(s) 206, 382
BslFI GGGAC 2 cut(s) 284, 527
BslI CCNNNNNNNGG 2 cut(s) 164, 321
BsmAI GTCTC 2 cut(s) 239, 366
BsmBI CGTCTC 1 cut(s) 366
BsmFI GGGAC 2 cut(s) 284, 527
BsnI GGCC 3 cut(s) 43, 215, 440
Bsp143I GATC 3 cut(s) 16, 73, 291
BspACI CCGC 5 cut(s) 22, 25, 135, 216, 737
BspANI GGCC 3 cut(s) 43, 215, 440
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 5 cut(s) 208, 260, 357, 384, 543
BspMAI CTGCAG 1 cut(s) 430
BspOI GCTAGC 1 cut(s) 461
BspT107I GGYRCC 2 cut(s) 206, 382
BsrDI GCAATG 1 cut(s) 659
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 3 cut(s) 202, 210, 751
BssMI GATC 3 cut(s) 16, 73, 291
BssNI GRCGYC 1 cut(s) 207
BssT1I CCWWGG 3 cut(s) 202, 210, 751
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 363, 387
BstACI GRCGYC 1 cut(s) 207
BstC8I GCNNGC 3 cut(s) 311, 459, 475
BstDEI CTNAG 2 cut(s) 222, 628
BstF5I GGATG 6 cut(s) 170, 242, 294, 484, 677, 724
BstFNI CGCG 1 cut(s) 129
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 2 cut(s) 69, 209
BstKTI GATC 3 cut(s) 19, 76, 294
BstMAI GTCTC 2 cut(s) 239, 366
BstMBI GATC 3 cut(s) 16, 73, 291
BstMWI GCNNNNNNNGC 2 cut(s) 94, 215
BstNI CCWGG 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 163
BstSFI CTRYAG 1 cut(s) 426
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 412, 558
BstV2I GAAGAC 1 cut(s) 668
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 3 cut(s) 43, 215, 440
BtgZI GCGATG 1 cut(s) 290
BtsCI GGATG 6 cut(s) 170, 242, 294, 484, 677, 724
BtsI GCAGTG 1 cut(s) 44
BtsIMutI CAGTG 1 cut(s) 44
Cac8I GCNNGC 3 cut(s) 311, 459, 475
CaiI CAGNNNCTG 1 cut(s) 164
CfoI GCGC 2 cut(s) 69, 209
Cfr13I GGNCC 2 cut(s) 431, 541
Csp6I GTAC 2 cut(s) 184, 348
CviAII CATG 6 cut(s) 119, 274, 317, 470, 546, 581
CviQI GTAC 2 cut(s) 184, 348
DdeI CTNAG 2 cut(s) 222, 628
DinI GGCGCC 1 cut(s) 208
DpnI GATC 3 cut(s) 18, 75, 293
DpnII GATC 3 cut(s) 16, 73, 291
EciI GGCGGA 2 cut(s) 11, 752
Eco130I CCWWGG 3 cut(s) 202, 210, 751
Eco47I GGWCC 2 cut(s) 431, 541
EcoO109I RGGNCCY 1 cut(s) 541
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 3 cut(s) 202, 210, 751
EgeI GGCGCC 1 cut(s) 208
EheI GGCGCC 1 cut(s) 208
ErhI CCWWGG 3 cut(s) 202, 210, 751
Esp3I CGTCTC 1 cut(s) 366
FaeI CATG 6 cut(s) 122, 277, 320, 473, 549, 584
FaqI GGGAC 2 cut(s) 284, 527
FatI CATG 6 cut(s) 118, 273, 316, 469, 545, 580
FbaI TGATCA 1 cut(s) 291
Fnu4HI GCNGC 4 cut(s) 25, 216, 426, 572
FokI GGATG 6 cut(s) 157, 249, 301, 471, 684, 731
Fsp4HI GCNGC 4 cut(s) 25, 216, 426, 572
FspBI CTAG 3 cut(s) 242, 458, 766
GlaI GCGC 2 cut(s) 68, 208
GluI GCNGC 4 cut(s) 25, 216, 426, 572
GsuI CTGGAG 2 cut(s) 141, 186
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 3 cut(s) 43, 215, 440
HhaI GCGC 2 cut(s) 69, 209
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 6 cut(s) 122, 277, 320, 473, 549, 584
Hin6I GCGC 2 cut(s) 67, 207
HinP1I GCGC 2 cut(s) 67, 207
HindIII AAGCTT 1 cut(s) 725
HinfI GANTC 4 cut(s) 194, 226, 247, 510
Hpy188I TCNGA 3 cut(s) 16, 193, 601
Hpy188III TCNNGA 3 cut(s) 158, 281, 669
Hpy99I CGWCG 1 cut(s) 181
HpyAV CCTTC 4 cut(s) 18, 134, 455, 727
HpyCH4III ACNGT 2 cut(s) 363, 387
HpyCH4IV ACGT 2 cut(s) 297, 577
HpyCH4V TGCA 4 cut(s) 428, 477, 574, 664
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 215
HpyF3I CTNAG 2 cut(s) 222, 628
HpySE526I ACGT 2 cut(s) 297, 577
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 6 cut(s) 122, 277, 320, 473, 549, 584
HspAI GCGC 2 cut(s) 67, 207
KasI GGCGCC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 291
Kzo9I GATC 3 cut(s) 16, 73, 291
LmnI GCTCC 3 cut(s) 120, 167, 568
Lsp1109I GCAGC 2 cut(s) 412, 558
LweI GCATC 3 cut(s) 179, 227, 227
MaeI CTAG 3 cut(s) 242, 458, 766
MaeII ACGT 2 cut(s) 297, 577
MaeIII GTNAC 3 cut(s) 3, 130, 589
MalI GATC 3 cut(s) 18, 75, 293
MboI GATC 3 cut(s) 16, 73, 291
MboII GAAGA 3 cut(s) 3, 668, 671
MflI RGATCY 1 cut(s) 73
Mly113I GGCGCC 1 cut(s) 207
MlyI GAGTC 2 cut(s) 188, 241
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 7 cut(s) 155, 161, 165, 184, 312, 526, 618
MseI TTAA 1 cut(s) 453
MspR9I CCNGG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 165
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 94, 215
NarI GGCGCC 1 cut(s) 207
NdeII GATC 3 cut(s) 16, 73, 291
NheI GCTAGC 1 cut(s) 457
NlaIII CATG 6 cut(s) 122, 277, 320, 473, 549, 584
NlaIV GGNNCC 5 cut(s) 208, 260, 357, 384, 543
NmuCI GTSAC 1 cut(s) 3
PcsI WCGNNNNNNNCGW 1 cut(s) 359
PfeI GAWTC 2 cut(s) 226, 510
PflMI CCANNNNNTGG 1 cut(s) 164
PkrI GCNGC 4 cut(s) 26, 217, 427, 573
PleI GAGTC 2 cut(s) 188, 241
PluTI GGCGCC 1 cut(s) 210
PpsI GAGTC 2 cut(s) 188, 241
PpuMI RGGWCCY 1 cut(s) 541
Psp5II RGGWCCY 1 cut(s) 541
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 5 cut(s) 208, 260, 357, 384, 543
PspPI GGNCC 2 cut(s) 431, 541
PspPPI RGGWCCY 1 cut(s) 541
PstI CTGCAG 1 cut(s) 430
PstNI CAGNNNCTG 1 cut(s) 164
PsuI RGATCY 1 cut(s) 73
RsaI GTAC 2 cut(s) 185, 349
RsaNI GTAC 2 cut(s) 184, 348
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 4 cut(s) 25, 216, 426, 572
Sau3AI GATC 3 cut(s) 16, 73, 291
Sau96I GGNCC 2 cut(s) 431, 541
ScaI AGTACT 1 cut(s) 185
SchI GAGTC 2 cut(s) 188, 241
ScrFI CCNGG 1 cut(s) 165
SfaNI GCATC 3 cut(s) 179, 227, 227
SfcI CTRYAG 1 cut(s) 426
SfoI GGCGCC 1 cut(s) 208
SinI GGWCC 2 cut(s) 431, 541
SmlI CTYRAG 1 cut(s) 728
SmoI CTYRAG 1 cut(s) 728
SsiI CCGC 5 cut(s) 22, 25, 135, 216, 737
SspDI GGCGCC 1 cut(s) 206
SspMI CTAG 3 cut(s) 242, 458, 766
StyD4I CCNGG 1 cut(s) 163
StyI CCWWGG 3 cut(s) 202, 210, 751
TaaI ACNGT 2 cut(s) 363, 387
TaiI ACGT 2 cut(s) 300, 580
TaqI TCGA 2 cut(s) 176, 250
TatI WGTACW 1 cut(s) 183
TauI GCSGC 2 cut(s) 27, 218
TfiI GAWTC 2 cut(s) 226, 510
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TscAI CASTG 1 cut(s) 51
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 2 cut(s) 425, 571
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 382
TspGWI ACGGA 3 cut(s) 21, 194, 368
TspRI CASTG 1 cut(s) 51
Van91I CCANNNNNTGG 1 cut(s) 164
VpaK11BI GGWCC 2 cut(s) 431, 541
XspI CTAG 3 cut(s) 242, 458, 766
ZrmI AGTACT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.