RchiOBHm_Chr4g0407901

snRNA import into nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0007499
Physical Location & Seq
Reverse (-)
30221639 .. 30222196
558 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37912

Sequence Viewer

Length: 558 bp
ATGCTTCCCGAGTGGATGATCGACGTCCCTCATCGCTTGCCCCATGACTGGTTTGTATTAGCTTGGTTGTTTCGTACAATGGAACCACCGTTAGTAGGCGACGAAACGACACCGTTCTTCATCGTTTCCCGTCTGCTTTACCAGATGGTTGCTGCAGGACCAAAGGACAACCTTCCTGTTACTAGACTGTATATTTCACGAGATGGACCAGATCGACTTATTATGTCATTGACATGTTGTGCTGGAGATTACTCTTTGTATGATTGCACGGCTGAGTTTAAATTTTTCTGGTTGAAGTCTAAGCTAGCCGAGACCCATGCTTGCGATCGCCATCCATCATATTATCATAGGTATAGATTCATCTTGGTTCCTTGGTATACCTGTGATCGCACTGCTCTACACACAACATATATATACCGGAGCGATACCTTACGTAAACCACATCGATCTGATAATCCTCCCGTTGTATTTGGTTGCTTAGGTTTGGACTTGATACAGAAGTTGGGAATATTGCAGTCAGGATGTCTTCTTCGTTTTGCTATTGGTGATGAGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

21.54

Weight (kDa)

7.03

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPN1_m3Gcap_bd PF21974 83 - 137 1.6e-08 Snurportin1, m3G cap-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 27
AccI GTMKAC 1 cut(s) 377
AcsI RAATTY 1 cut(s) 281
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 1 cut(s) 76
AfiI CCNNNNNNNGG 2 cut(s) 48, 95
AflIII ACRYGT 1 cut(s) 233
AgsI TTSAA 1 cut(s) 295
AluBI AGCT 2 cut(s) 62, 304
AluI AGCT 2 cut(s) 62, 304
Alw26I GTCTC 1 cut(s) 305
Ama87I CYCGRG 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 1 cut(s) 281
AsiSI GCGATCGC 1 cut(s) 328
AspS9I GGNCC 2 cut(s) 158, 206
AsuHPI GGTGA 1 cut(s) 557
AsuNHI GCTAGC 1 cut(s) 304
AvaI CYCGRG 1 cut(s) 8
AvaII GGWCC 2 cut(s) 158, 206
BaeI ACNNNNGTAYC 2 cut(s) 485, 518
BauI CACGAG 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 518
BbvI GCAGC 1 cut(s) 139
BccI CCATC 4 cut(s) 139, 197, 339, 343
BceAI ACGGC 1 cut(s) 285
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 2 cut(s) 183, 305
BfmI CTRYAG 1 cut(s) 153
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme18I GGWCC 2 cut(s) 158, 206
BmeT110I CYCGRG 1 cut(s) 8
BmgT120I GGNCC 2 cut(s) 158, 206
BmiI GGNNCC 2 cut(s) 84, 369
BmtI GCTAGC 1 cut(s) 308
BpiI GAAGAC 1 cut(s) 518
BpmI CTGGAG 1 cut(s) 264
Bpu10I CCTNAGC 1 cut(s) 478
Bsa29I ATCGAT 1 cut(s) 445
BsaAI YACGTR 1 cut(s) 434
BsaBI GATNNNNATC 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 24
BsaI GGTCTC 1 cut(s) 305
BsaJI CCNNGG 1 cut(s) 371
BsaWI WCCGGW 1 cut(s) 417
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 95
Bse1I ACTGG 1 cut(s) 53
Bse8I GATNNNNATC 1 cut(s) 330
BseCI ATCGAT 1 cut(s) 445
BseDI CCNNGG 1 cut(s) 371
BseGI GGATG 3 cut(s) 21, 331, 527
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 2 cut(s) 48, 95
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 53
BseXI GCAGC 1 cut(s) 139
Bsh1285I CGRYCG 1 cut(s) 328
BshVI ATCGAT 1 cut(s) 445
BsiEI CGRYCG 1 cut(s) 328
BsiHKCI CYCGRG 1 cut(s) 8
BsiSI CCGG 1 cut(s) 418
BslFI GGGAC 1 cut(s) 11
BslI CCNNNNNNNGG 2 cut(s) 48, 95
BsmAI GTCTC 1 cut(s) 305
BsmFI GGGAC 1 cut(s) 11
Bso31I GGTCTC 1 cut(s) 305
BsoBI CYCGRG 1 cut(s) 8
Bsp143I GATC 5 cut(s) 18, 211, 325, 385, 446
BspCNI CTCAG 1 cut(s) 265
BspDI ATCGAT 1 cut(s) 445
BspLI GGNNCC 2 cut(s) 84, 369
BspMAI CTGCAG 1 cut(s) 157
BspOI GCTAGC 1 cut(s) 308
BspTNI GGTCTC 1 cut(s) 305
BsrI ACTGG 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 371
BssMI GATC 5 cut(s) 18, 211, 325, 385, 446
BssNAI GTATAC 1 cut(s) 378
BssNI GRCGYC 1 cut(s) 24
BssSI CACGAG 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 371
Bst1107I GTATAC 1 cut(s) 378
Bst2BI CACGAG 1 cut(s) 198
Bst4CI ACNGT 3 cut(s) 90, 114, 189
BstACI GRCGYC 1 cut(s) 24
BstBAI YACGTR 1 cut(s) 434
BstC8I GCNNGC 3 cut(s) 38, 306, 322
BstDEI CTNAG 3 cut(s) 273, 300, 478
BstF5I GGATG 3 cut(s) 21, 331, 527
BstKTI GATC 5 cut(s) 21, 214, 328, 388, 449
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 5 cut(s) 18, 211, 325, 385, 446
BstMCI CGRYCG 1 cut(s) 328
BstNSI RCATGY 1 cut(s) 237
BstSFI CTRYAG 1 cut(s) 153
BstSNI TACGTA 1 cut(s) 434
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 518
BstZ17I GTATAC 1 cut(s) 378
Bsu15I ATCGAT 1 cut(s) 445
BsuTUI ATCGAT 1 cut(s) 445
BtgZI GCGATG 1 cut(s) 17
BtsCI GGATG 3 cut(s) 21, 331, 527
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 1 cut(s) 390
Cac8I GCNNGC 3 cut(s) 38, 306, 322
Cfr13I GGNCC 2 cut(s) 158, 206
ClaI ATCGAT 1 cut(s) 445
Csp6I GTAC 1 cut(s) 75
CviAII CATG 3 cut(s) 44, 234, 317
CviJI RGCY 4 cut(s) 62, 272, 304, 308
CviKI_1 RGCY 4 cut(s) 62, 272, 304, 308
CviQI GTAC 1 cut(s) 75
DdeI CTNAG 3 cut(s) 273, 300, 478
DpnI GATC 5 cut(s) 20, 213, 327, 387, 448
DpnII GATC 5 cut(s) 18, 211, 325, 385, 446
DraI TTTAAA 1 cut(s) 280
Eco105I TACGTA 1 cut(s) 434
Eco130I CCWWGG 1 cut(s) 371
Eco31I GGTCTC 1 cut(s) 305
Eco47I GGWCC 2 cut(s) 158, 206
Eco88I CYCGRG 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 371
ErhI CCWWGG 1 cut(s) 371
FaeI CATG 3 cut(s) 47, 237, 320
FaqI GGGAC 1 cut(s) 11
FatI CATG 3 cut(s) 43, 233, 316
FblI GTMKAC 1 cut(s) 377
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 3 cut(s) 28, 318, 534
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 2 cut(s) 183, 305
GluI GCNGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 264
HapII CCGG 1 cut(s) 418
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 3 cut(s) 47, 237, 320
HinfI GANTC 1 cut(s) 357
HpaII CCGG 1 cut(s) 418
HphI GGTGA 1 cut(s) 557
Hpy166II GTNNAC 2 cut(s) 378, 437
Hpy188I TCNGA 1 cut(s) 451
Hpy188III TCNNGA 3 cut(s) 8, 198, 519
Hpy8I GTNNAC 2 cut(s) 378, 437
Hpy99I CGWCG 2 cut(s) 26, 104
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 3 cut(s) 90, 114, 189
HpyCH4IV ACGT 2 cut(s) 24, 433
HpyCH4V TGCA 3 cut(s) 155, 267, 514
HpyF3I CTNAG 3 cut(s) 273, 300, 478
HpySE526I ACGT 2 cut(s) 24, 433
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 3 cut(s) 47, 237, 320
Kzo9I GATC 5 cut(s) 18, 211, 325, 385, 446
LmnI GCTCC 1 cut(s) 420
Lsp1109I GCAGC 1 cut(s) 139
MaeI CTAG 2 cut(s) 183, 305
MaeII ACGT 2 cut(s) 24, 433
MaeIII GTNAC 1 cut(s) 178
MalI GATC 5 cut(s) 20, 213, 327, 387, 448
MboI GATC 5 cut(s) 18, 211, 325, 385, 446
MboII GAAGA 3 cut(s) 109, 518, 521
MluCI AATT 1 cut(s) 281
MnlI CCTC 3 cut(s) 39, 468, 544
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 1 cut(s) 232
MspI CCGG 1 cut(s) 418
NdeII GATC 5 cut(s) 18, 211, 325, 385, 446
NheI GCTAGC 1 cut(s) 304
NlaIII CATG 3 cut(s) 47, 237, 320
NlaIV GGNNCC 2 cut(s) 84, 369
NmeAIII GCCGAG 1 cut(s) 334
NspI RCATGY 1 cut(s) 237
PciI ACATGT 1 cut(s) 233
PfeI GAWTC 1 cut(s) 357
PkrI GCNGC 1 cut(s) 154
Ple19I CGATCG 1 cut(s) 328
Ppu21I YACGTR 1 cut(s) 434
PscI ACATGT 1 cut(s) 233
PspN4I GGNNCC 2 cut(s) 84, 369
PspPI GGNCC 2 cut(s) 158, 206
PstI CTGCAG 1 cut(s) 157
PvuI CGATCG 1 cut(s) 328
RgaI GCGATCGC 1 cut(s) 328
RsaI GTAC 1 cut(s) 76
RsaNI GTAC 1 cut(s) 75
RseI CAYNNNNRTG 1 cut(s) 232
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 5 cut(s) 18, 211, 325, 385, 446
Sau96I GGNCC 2 cut(s) 158, 206
SetI ASST 9 cut(s) 27, 64, 174, 306, 353, 383, 431, 436, 484
SfaAI GCGATCGC 1 cut(s) 328
SfcI CTRYAG 1 cut(s) 153
SgfI GCGATCGC 1 cut(s) 328
SinI GGWCC 2 cut(s) 158, 206
SmiMI CAYNNNNRTG 1 cut(s) 232
SnaBI TACGTA 1 cut(s) 434
Sse9I AATT 1 cut(s) 281
SspI AATATT 1 cut(s) 510
SspMI CTAG 2 cut(s) 183, 305
StyI CCWWGG 1 cut(s) 371
TaaI ACNGT 3 cut(s) 90, 114, 189
TaiI ACGT 2 cut(s) 27, 436
TaqI TCGA 3 cut(s) 21, 214, 445
TasI AATT 1 cut(s) 281
TfiI GAWTC 1 cut(s) 357
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 1 cut(s) 397
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 109, 349
TspRI CASTG 1 cut(s) 397
VpaK11BI GGWCC 2 cut(s) 158, 206
XapI RAATTY 1 cut(s) 281
XceI RCATGY 1 cut(s) 237
XmiI GTMKAC 1 cut(s) 377
XspI CTAG 2 cut(s) 183, 305
ZraI GACGTC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.