Rh4CG154100

snRNA import into nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0007499
Physical Location & Seq
Reverse (-)
33878070 .. 33878531
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG154100.1

Sequence Viewer

Length: 462 bp
ATGTCACCTTCTTCCGATCTCCTCCGCCGTCAGTTCAACAGGCCGCTGCTTTCAAACCAGCAAAGGCGCAGAGATCTTTCCCTGAAGCAACAAAAGCAAAGCTGTGATTCTCAGCTCCACGCCCGTCGCGTAACCGCCGCACTCCTCTCCCTCCCTCTAGAACCTGGAGCCTCCTCGACGGAGTACTACTCCGACTCGCACCTTGGAGCCAAGGTCGCATCTAAGATTCTCAAAGGAGGCCTAGAGACTCGAAAGTGGTTCCAAAAGAAGCTCATGCTTCCCAAGTGGATGATCGACGTCCCTCATCGCTTGCCCCATGACTGGTTTGTATTAGCTTGGTTGTTTCGTACAACGGAACCACCATTAGTAGGCGACAAAATGGCACCGTTGTTCATCGTTTCCCGTCTGCTTTACCAGATGGTTGCTGCAGGACCAAAGGACAACCTTCCTGTTCTATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.58

Weight (kDa)

10.16

Isoelectric Point (pI)

70.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 300
AccB1I GGYRCC 1 cut(s) 382
AccII CGCG 1 cut(s) 129
AciI CCGC 4 cut(s) 25, 44, 135, 138
AcuI CTGAAG 1 cut(s) 104
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 2 cut(s) 185, 349
AfiI CCNNNNNNNGG 2 cut(s) 321, 368
AgsI TTSAA 2 cut(s) 37, 54
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 4 cut(s) 102, 115, 271, 335
AluI AGCT 4 cut(s) 102, 115, 271, 335
Alw26I GTCTC 1 cut(s) 239
AoxI GGCC 2 cut(s) 41, 238
ApeKI GCWGC 2 cut(s) 46, 425
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 431
AvaII GGWCC 1 cut(s) 431
BanI GGYRCC 1 cut(s) 382
BbvI GCAGC 2 cut(s) 33, 412
BccI CCATC 1 cut(s) 412
BceAI ACGGC 1 cut(s) 12
BciT130I CCWGG 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 3 cut(s) 158, 242, 460
BfmI CTRYAG 1 cut(s) 426
BglII AGATCT 1 cut(s) 73
BisI GCNGC 4 cut(s) 44, 47, 138, 426
BlsI GCNGC 4 cut(s) 45, 48, 139, 427
BmcAI AGTACT 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 165
Bme18I GGWCC 1 cut(s) 431
BmgT120I GGNCC 1 cut(s) 431
BmiI GGNNCC 5 cut(s) 169, 208, 260, 357, 384
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 1 cut(s) 227
BplI GAGNNNNNCTC 2 cut(s) 173, 205
BpmI CTGGAG 1 cut(s) 186
BsaHI GRCGYC 1 cut(s) 297
BsaJI CCNNGG 2 cut(s) 202, 210
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bsc4I CCNNNNNNNGG 2 cut(s) 321, 368
Bse1I ACTGG 1 cut(s) 326
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 2 cut(s) 202, 210
BseGI GGATG 1 cut(s) 294
BseLI CCNNNNNNNGG 2 cut(s) 321, 368
BseMII CTCAG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 3 cut(s) 11, 134, 163
BseXI GCAGC 2 cut(s) 33, 412
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 2 cut(s) 43, 240
BshNI GGYRCC 1 cut(s) 382
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 2 cut(s) 321, 368
BsmAI GTCTC 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 2 cut(s) 43, 240
Bsp143I GATC 3 cut(s) 16, 73, 291
BspACI CCGC 4 cut(s) 25, 44, 135, 138
BspANI GGCC 2 cut(s) 43, 240
BspCNI CTCAG 1 cut(s) 124
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 5 cut(s) 169, 208, 260, 357, 384
BspMAI CTGCAG 1 cut(s) 430
BspT107I GGYRCC 1 cut(s) 382
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 2 cut(s) 202, 210
BssMI GATC 3 cut(s) 16, 73, 291
BssNI GRCGYC 1 cut(s) 297
BssT1I CCWWGG 2 cut(s) 202, 210
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 387
BstACI GRCGYC 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 2 cut(s) 111, 222
BstF5I GGATG 1 cut(s) 294
BstFNI CGCG 1 cut(s) 129
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 3 cut(s) 19, 76, 294
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 3 cut(s) 16, 73, 291
BstMWI GCNNNNNNNGC 2 cut(s) 94, 215
BstNI CCWGG 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 163
BstSFI CTRYAG 1 cut(s) 426
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 33, 412
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 2 cut(s) 43, 240
BtgZI GCGATG 1 cut(s) 290
BtsCI GGATG 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 311
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 1 cut(s) 431
Csp6I GTAC 2 cut(s) 184, 348
CviAII CATG 2 cut(s) 274, 317
CviJI RGCY 8 cut(s) 43, 102, 115, 170, 209, 240, 271, 335
CviKI_1 RGCY 8 cut(s) 43, 102, 115, 170, 209, 240, 271, 335
CviQI GTAC 2 cut(s) 184, 348
DdeI CTNAG 2 cut(s) 111, 222
DpnI GATC 3 cut(s) 18, 75, 293
DpnII GATC 3 cut(s) 16, 73, 291
EciI GGCGGA 1 cut(s) 14
Eco130I CCWWGG 2 cut(s) 202, 210
Eco147I AGGCCT 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 431
Eco57I CTGAAG 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 2 cut(s) 202, 210
ErhI CCWWGG 2 cut(s) 202, 210
FaeI CATG 2 cut(s) 277, 320
FaiI YATR 3 cut(s) 275, 318, 457
FaqI GGGAC 1 cut(s) 284
FatI CATG 2 cut(s) 273, 316
Fnu4HI GCNGC 4 cut(s) 44, 47, 138, 426
FokI GGATG 1 cut(s) 301
Fsp4HI GCNGC 4 cut(s) 44, 47, 138, 426
FspBI CTAG 3 cut(s) 158, 242, 460
GlaI GCGC 1 cut(s) 68
GluI GCNGC 4 cut(s) 44, 47, 138, 426
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 2 cut(s) 43, 240
HhaI GCGC 1 cut(s) 69
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 2 cut(s) 277, 320
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HinfI GANTC 4 cut(s) 107, 194, 226, 247
Hpy188I TCNGA 2 cut(s) 16, 193
Hpy188III TCNNGA 1 cut(s) 158
Hpy99I CGWCG 3 cut(s) 129, 181, 299
HpyAV CCTTC 2 cut(s) 18, 455
HpyCH4III ACNGT 1 cut(s) 387
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 1 cut(s) 428
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 215
HpyF3I CTNAG 2 cut(s) 111, 222
HpySE526I ACGT 1 cut(s) 297
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 2 cut(s) 277, 320
HspAI GCGC 1 cut(s) 67
Kzo9I GATC 3 cut(s) 16, 73, 291
LmnI GCTCC 3 cut(s) 120, 167, 206
LpnPI CCDG 8 cut(s) 25, 71, 95, 150, 177, 307, 414, 428
Lsp1109I GCAGC 2 cut(s) 33, 412
LweI GCATC 1 cut(s) 227
MaeI CTAG 3 cut(s) 158, 242, 460
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 2 cut(s) 3, 130
MalI GATC 3 cut(s) 18, 75, 293
MboI GATC 3 cut(s) 16, 73, 291
MboII GAAGA 1 cut(s) 3
MflI RGATCY 1 cut(s) 73
MlyI GAGTC 2 cut(s) 188, 241
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 8 cut(s) 32, 155, 161, 165, 181, 184, 230, 312
MspA1I CMGCKG 1 cut(s) 46
MspR9I CCNGG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 165
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 94, 215
NdeII GATC 3 cut(s) 16, 73, 291
NlaIII CATG 2 cut(s) 277, 320
NlaIV GGNNCC 5 cut(s) 169, 208, 260, 357, 384
NmuCI GTSAC 1 cut(s) 3
PceI AGGCCT 1 cut(s) 240
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PfeI GAWTC 2 cut(s) 107, 226
PkrI GCNGC 4 cut(s) 45, 48, 139, 427
PleI GAGTC 2 cut(s) 188, 241
PpsI GAGTC 2 cut(s) 188, 241
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 5 cut(s) 169, 208, 260, 357, 384
PspPI GGNCC 1 cut(s) 431
PstI CTGCAG 1 cut(s) 430
PsuI RGATCY 1 cut(s) 73
RsaI GTAC 2 cut(s) 185, 349
RsaNI GTAC 2 cut(s) 184, 348
SatI GCNGC 4 cut(s) 44, 47, 138, 426
Sau3AI GATC 3 cut(s) 16, 73, 291
Sau96I GGNCC 1 cut(s) 431
ScaI AGTACT 1 cut(s) 185
SchI GAGTC 2 cut(s) 188, 241
ScrFI CCNGG 1 cut(s) 165
SfaNI GCATC 1 cut(s) 227
SfcI CTRYAG 1 cut(s) 426
SinI GGWCC 1 cut(s) 431
SseBI AGGCCT 1 cut(s) 240
SsiI CCGC 4 cut(s) 25, 44, 135, 138
SspMI CTAG 3 cut(s) 158, 242, 460
StuI AGGCCT 1 cut(s) 240
StyD4I CCNGG 1 cut(s) 163
StyI CCWWGG 2 cut(s) 202, 210
TaaI ACNGT 1 cut(s) 387
TaiI ACGT 1 cut(s) 300
TaqI TCGA 3 cut(s) 176, 250, 294
TatI WGTACW 1 cut(s) 183
TauI GCSGC 2 cut(s) 46, 140
TfiI GAWTC 2 cut(s) 107, 226
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 2 cut(s) 46, 425
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 382
TspGWI ACGGA 2 cut(s) 194, 368
VpaK11BI GGWCC 1 cut(s) 431
XbaI TCTAGA 1 cut(s) 157
XspI CTAG 3 cut(s) 158, 242, 460
ZraI GACGTC 1 cut(s) 298
ZrmI AGTACT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.