FvH4_4g12580

Ribosomal protein S1-like RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0005054
Physical Location & Seq
Forward (+)
16263267 .. 16272312
9046 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12580.t2

Sequence Viewer

Length: 843 bp
ATGGTTGAAGGGTATAACAGTGGAGGTTTGCTCGTTCGTTTTCATTCTTTAGTGGGTTTTCTTCCATTTCCACAGTTGAGCCCATCACACTTTTGCCAAGAACCAGGAAAAAGCGTCCAGGAGATTGCAAAAGGTTTACCAGGTTCTCTTATTTCTGTAAAGGTAATCCAAGCAGATGAAGAAAACAAGAAACTGATATTCTCAGAAAAGGAAGCTGTCTGGTCCAAGTTTTCTGAGAAAATTAGTGTTGGGGATGTTTTTGAAGCTAGGGTGGGTTCTGTGGAGGATTACGGGGCTTTTGTTCATCTACTATTTCCTGATGGTCTTTATCATCTGACTGGACTAGTACATGTCTCGGAGGTTTCATGGGATTTAGTTCAGGATGTAAGAGACATTTTGTCGGAGGGCGATGCAGTAAGAGTTAAGATCATTAATATTGATCGAGAAAAGTCAAGAATCACATTGTCAATTAAACAGTTGGAGGAAGATCCACTTTTAGAAACATTGGACAAAGTGATACCACAGGATGGCTCTGAAGGTCCTGATTCTTTGAACCCTAACAATAGCAGTAATATAGAACCTCTTCCAGGCCTTGAAGCCATATTTGAAGAGCTACTACAGGAAGATGGAATAGATGATGTAGGAATCACTCGCCAAGGGTTTGAGAAAAGGGTGGTTTCACAGGACCTGCAACTTTGGCTCTCTAATTCACCAGCCATTAACCGGAAGTTTACTCTCCTTGCACGGGCAGGAAGGCAGGTGCAGGAAATACAACTGACAACAACACTTGATCAGGAAGGTATAAAACAAGCACTCCAACGAGTATTGGAGCGTGTCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
S1

Protein Analysis

281

Amino Acids

31.15

Weight (kDa)

4.77

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1 PF00575 235 - 311 1.7e-17 S1 RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 748
Acc36I ACCTGC 2 cut(s) 696, 748
AccB7I CCANNNNNTGG 1 cut(s) 527
AclWI GGATC 1 cut(s) 482
AcuI CTGAAG 1 cut(s) 555
AfaI GTAC 1 cut(s) 348
AfiI CCNNNNNNNGG 4 cut(s) 527, 587, 723, 745
AflIII ACRYGT 1 cut(s) 349
AgsI TTSAA 5 cut(s) 8, 263, 553, 596, 608
AhdI GACNNNNNGTC 1 cut(s) 397
AhlI ACTAGT 1 cut(s) 343
AjnI CCWGG 4 cut(s) 103, 117, 139, 586
AluBI AGCT 3 cut(s) 215, 266, 613
AluI AGCT 3 cut(s) 215, 266, 613
Alw26I GTCTC 2 cut(s) 358, 384
AlwI GGATC 1 cut(s) 482
AlwNI CAGNNNCTG 1 cut(s) 688
AoxI GGCC 1 cut(s) 589
AseI ATTAAT 1 cut(s) 432
Asp700I GAANNNNTTC 1 cut(s) 582
AspS9I GGNCC 3 cut(s) 222, 539, 685
AsuHPI GGTGA 1 cut(s) 702
AvaII GGWCC 3 cut(s) 222, 539, 685
BanII GRGCYC 1 cut(s) 83
BarI GAAGNNNNNNTAC 2 cut(s) 600, 632
BccI CCATC 4 cut(s) 91, 314, 521, 620
BciT130I CCWGG 4 cut(s) 105, 119, 141, 588
BclI TGATCA 1 cut(s) 790
BcoDI GTCTC 2 cut(s) 358, 384
BcuI ACTAGT 1 cut(s) 343
BfaI CTAG 2 cut(s) 267, 344
BfmI CTRYAG 1 cut(s) 617
BfuAI ACCTGC 2 cut(s) 696, 748
Bme1390I CCNGG 4 cut(s) 105, 119, 141, 588
Bme18I GGWCC 3 cut(s) 222, 539, 685
BmeRI GACNNNNNGTC 1 cut(s) 397
BmgT120I GGNCC 3 cut(s) 222, 539, 685
BmrFI CCNGG 4 cut(s) 105, 119, 141, 588
BmsI GCATC 1 cut(s) 400
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BsaJI CCNNGG 1 cut(s) 655
BsaWI WCCGGW 1 cut(s) 723
BsaXI ACNNNNNCTCC 2 cut(s) 798, 828
Bsc4I CCNNNNNNNGG 4 cut(s) 527, 587, 723, 745
Bse1I ACTGG 1 cut(s) 343
BseBI CCWGG 4 cut(s) 105, 119, 141, 588
BseDI CCNNGG 1 cut(s) 655
BseGI GGATG 3 cut(s) 259, 388, 532
BseLI CCNNNNNNNGG 4 cut(s) 527, 587, 723, 745
BseMII CTCAG 2 cut(s) 216, 225
BseNI ACTGG 1 cut(s) 343
BsgI GTGCAG 1 cut(s) 782
BshFI GGCC 1 cut(s) 591
BsiSI CCGG 1 cut(s) 724
BslFI GGGAC 1 cut(s) 821
BslI CCNNNNNNNGG 4 cut(s) 527, 587, 723, 745
BsmAI GTCTC 2 cut(s) 358, 384
BsmFI GGGAC 1 cut(s) 821
BsnI GGCC 1 cut(s) 591
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 4 cut(s) 426, 439, 487, 790
BspANI GGCC 1 cut(s) 591
BspCNI CTCAG 2 cut(s) 215, 226
BspMI ACCTGC 2 cut(s) 696, 748
BspPI GGATC 1 cut(s) 482
BspQI GCTCTTC 1 cut(s) 603
BsrI ACTGG 1 cut(s) 343
BssECI CCNNGG 1 cut(s) 655
BssMI GATC 4 cut(s) 426, 439, 487, 790
BssT1I CCWWGG 1 cut(s) 655
Bst2UI CCWGG 4 cut(s) 105, 119, 141, 588
Bst4CI ACNGT 3 cut(s) 20, 75, 477
Bst6I CTCTTC 2 cut(s) 588, 603
BstDEI CTNAG 2 cut(s) 202, 234
BstENI CCTNNNNNAGG 1 cut(s) 585
BstF5I GGATG 3 cut(s) 259, 388, 532
BstKTI GATC 4 cut(s) 429, 442, 490, 793
BstMAI GTCTC 2 cut(s) 358, 384
BstMBI GATC 4 cut(s) 426, 439, 487, 790
BstMWI GCNNNNNNNGC 1 cut(s) 697
BstNI CCWGG 4 cut(s) 105, 119, 141, 588
BstNSI RCATGY 1 cut(s) 353
BstSCI CCNGG 4 cut(s) 103, 117, 139, 586
BstSFI CTRYAG 1 cut(s) 617
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
BsuRI GGCC 1 cut(s) 591
BtgZI GCGATG 1 cut(s) 423
BtsCI GGATG 3 cut(s) 259, 388, 532
BtsIMutI CAGTG 1 cut(s) 25
BveI ACCTGC 2 cut(s) 696, 748
CaiI CAGNNNCTG 1 cut(s) 688
Cfr13I GGNCC 3 cut(s) 222, 539, 685
CseI GACGC 1 cut(s) 103
CsiI ACCWGGT 1 cut(s) 139
Csp6I GTAC 1 cut(s) 347
CviAII CATG 2 cut(s) 350, 366
CviQI GTAC 1 cut(s) 347
DdeI CTNAG 2 cut(s) 202, 234
DpnI GATC 4 cut(s) 428, 441, 489, 792
DpnII GATC 4 cut(s) 426, 439, 487, 790
DriI GACNNNNNGTC 1 cut(s) 397
Eam1104I CTCTTC 2 cut(s) 588, 603
Eam1105I GACNNNNNGTC 1 cut(s) 397
EarI CTCTTC 2 cut(s) 588, 603
Eco130I CCWWGG 1 cut(s) 655
Eco147I AGGCCT 1 cut(s) 591
Eco24I GRGCYC 1 cut(s) 83
Eco47I GGWCC 3 cut(s) 222, 539, 685
Eco57I CTGAAG 1 cut(s) 555
EcoNI CCTNNNNNAGG 1 cut(s) 585
EcoO109I RGGNCCY 2 cut(s) 539, 685
EcoRII CCWGG 4 cut(s) 103, 117, 139, 586
EcoT14I CCWWGG 1 cut(s) 655
EcoT38I GRGCYC 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 655
FaeI CATG 2 cut(s) 353, 369
FaiI YATR 7 cut(s) 15, 351, 367, 575, 602, 803, 841
FalI AAGNNNNNCTT 2 cut(s) 477, 509
FaqI GGGAC 1 cut(s) 821
FatI CATG 2 cut(s) 349, 365
FbaI TGATCA 1 cut(s) 790
FokI GGATG 3 cut(s) 266, 395, 539
FriOI GRGCYC 1 cut(s) 83
FspBI CTAG 2 cut(s) 267, 344
HaeIII GGCC 1 cut(s) 591
HapII CCGG 1 cut(s) 724
HgaI GACGC 1 cut(s) 103
Hin1II CATG 2 cut(s) 353, 369
HinfI GANTC 3 cut(s) 456, 545, 645
HpaII CCGG 1 cut(s) 724
HphI GGTGA 1 cut(s) 702
Hpy166II GTNNAC 2 cut(s) 137, 732
Hpy188I TCNGA 6 cut(s) 205, 235, 336, 358, 403, 535
Hpy188III TCNNGA 6 cut(s) 317, 380, 443, 453, 542, 794
Hpy8I GTNNAC 2 cut(s) 137, 732
HpyAV CCTTC 3 cut(s) 530, 747, 791
HpyCH4III ACNGT 3 cut(s) 20, 75, 477
HpyCH4V TGCA 5 cut(s) 128, 413, 691, 743, 763
HpyF10VI GCNNNNNNNGC 1 cut(s) 697
HpyF3I CTNAG 2 cut(s) 202, 234
Hsp92II CATG 2 cut(s) 353, 369
Ksp22I TGATCA 1 cut(s) 790
Kzo9I GATC 4 cut(s) 426, 439, 487, 790
LguI GCTCTTC 1 cut(s) 603
LmnI GCTCC 1 cut(s) 829
LweI GCATC 1 cut(s) 400
MabI ACCWGGT 1 cut(s) 139
MaeI CTAG 2 cut(s) 267, 344
MalI GATC 4 cut(s) 428, 441, 489, 792
MboI GATC 4 cut(s) 426, 439, 487, 790
MboII GAAGA 6 cut(s) 53, 191, 497, 575, 620, 635
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 3 cut(s) 240, 468, 706
MmeI TCCRAC 3 cut(s) 381, 459, 841
MnlI CCTC 6 cut(s) 17, 277, 352, 397, 475, 591
MroXI GAANNNNTTC 1 cut(s) 582
MseI TTAA 4 cut(s) 423, 432, 471, 720
MspI CCGG 1 cut(s) 724
MspR9I CCNGG 4 cut(s) 105, 119, 141, 588
MvaI CCWGG 4 cut(s) 105, 119, 141, 588
MwoI GCNNNNNNNGC 1 cut(s) 697
NdeII GATC 4 cut(s) 426, 439, 487, 790
NlaIII CATG 2 cut(s) 353, 369
NspI RCATGY 1 cut(s) 353
PaqCI CACCTGC 1 cut(s) 748
PceI AGGCCT 1 cut(s) 591
PciI ACATGT 1 cut(s) 349
PciSI GCTCTTC 1 cut(s) 603
PdmI GAANNNNTTC 1 cut(s) 582
PfeI GAWTC 3 cut(s) 456, 545, 645
PflMI CCANNNNNTGG 1 cut(s) 527
PfoI TCCNGGA 1 cut(s) 117
PpuMI RGGWCCY 2 cut(s) 539, 685
PscI ACATGT 1 cut(s) 349
PshBI ATTAAT 1 cut(s) 432
Psp5II RGGWCCY 2 cut(s) 539, 685
Psp6I CCWGG 4 cut(s) 103, 117, 139, 586
PspGI CCWGG 4 cut(s) 103, 117, 139, 586
PspPI GGNCC 3 cut(s) 222, 539, 685
PspPPI RGGWCCY 2 cut(s) 539, 685
PstNI CAGNNNCTG 1 cut(s) 688
PsuI RGATCY 1 cut(s) 487
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
SapI GCTCTTC 1 cut(s) 603
SaqAI TTAA 4 cut(s) 423, 432, 471, 720
Sau3AI GATC 4 cut(s) 426, 439, 487, 790
Sau96I GGNCC 3 cut(s) 222, 539, 685
ScrFI CCNGG 4 cut(s) 105, 119, 141, 588
SduI GDGCHC 1 cut(s) 83
SexAI ACCWGGT 1 cut(s) 139
SfaNI GCATC 1 cut(s) 400
SfcI CTRYAG 1 cut(s) 617
SinI GGWCC 3 cut(s) 222, 539, 685
SpeI ACTAGT 1 cut(s) 343
Sse9I AATT 3 cut(s) 240, 468, 706
SseBI AGGCCT 1 cut(s) 591
SspI AATATT 1 cut(s) 436
SspMI CTAG 2 cut(s) 267, 344
StuI AGGCCT 1 cut(s) 591
StyD4I CCNGG 4 cut(s) 103, 117, 139, 586
StyI CCWWGG 1 cut(s) 655
TaaI ACNGT 3 cut(s) 20, 75, 477
TaqI TCGA 1 cut(s) 442
TasI AATT 3 cut(s) 240, 468, 706
TatI WGTACW 1 cut(s) 346
TfiI GAWTC 3 cut(s) 456, 545, 645
Tru1I TTAA 4 cut(s) 423, 432, 471, 720
Tru9I TTAA 4 cut(s) 423, 432, 471, 720
TscAI CASTG 1 cut(s) 25
TspDTI ATGAA 4 cut(s) 32, 192, 293, 354
TspRI CASTG 1 cut(s) 25
Van91I CCANNNNNTGG 1 cut(s) 527
VpaK11BI GGWCC 3 cut(s) 222, 539, 685
VspI ATTAAT 1 cut(s) 432
XagI CCTNNNNNAGG 1 cut(s) 585
XceI RCATGY 1 cut(s) 353
XmnI GAANNNNTTC 1 cut(s) 582
XspI CTAG 2 cut(s) 267, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.