Rh4DG162600

Ribosomal protein S1-like RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0005054
Physical Location & Seq
Reverse (-)
32341612 .. 32346388
4777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG162600.1

Sequence Viewer

Length: 927 bp
ATGCCTATATACACTGCAACTCTGGCCCTTGGATCAGTCTCACGGCTCTTGTTCATCACCAGCGAAGCCTCCTCCTCCTCCTCTAATACTTGCTCAGTCTCTTCTTGTTTCTTAAACCACTCCAACTTCCCAAAGCAATCCCACAAGTCTGTAAGCAAGAAGAGAACCTCTCTAGTTTGCACTGCGAGTAAGACTGAAGTGCAAGACTCCTCTCCCTCTACTGAGCAGGCTCGGAGGTCTGCTGATTGGAAGGTAGCAAAAGCTTACAGTGATAGTGGATTCATCTTTGATGGGATGGTTGAAGGGTATAACAGTGGAGGTTTGCTGGTTCGGTTTCATTCTTTAGTGGGTTTTCTTCCATTTCCACAATTGAGCCCATCACACTTTTGCCAAGAACCGGGGAAAGGCGTCCAGGAGATTGCAAAAGGATTACTTGGTTCTCTTATATCTGTTAAGGTAATCCAGGCAGATGAAGAGAACAAGAAACTGATATTCTCAGAAAAGGAAGCTGTATGGTCCAAGTTTTCTGAGAAAATTAGTGTTGGGGATGTTTTCGAAGCTAGGGTTGGTTCTGTGGAGGATTATGGTGCTTTTGTTCATCTACTATTTCCTGATGGTCTTTATCATTTGACTGGGCTAGTACATGTCTCGGAGGTTTCATGGGATCTAGTTCAGGATGTAAGAGACATTTTGTCGGAGGGCGATGCAGTAAGAGTTAAGATCATTAATATTGATCGAGAAAAGTCAAGAATCACATTATCAATTAAACAGTTGGAGGAAGATCCACTTTTAGAAACATTGGACAAAGTGATACCCCAGGATGGCTCTGACGGTCCTGATTCTTTGAACCCTAACAATAGCAATAATATAGAACCTCTTCCAGGCCTTGAAGCCATATTCGAAGAGCTACTACAGGAACAGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
S1

Protein Analysis

308

Amino Acids

33.71

Weight (kDa)

5.03

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1 PF00575 180 - 256 9.6e-18 S1 RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 40, 672, 776
AcuI CTGAAG 1 cut(s) 216
AcyI GRCGYC 1 cut(s) 408
AfaI GTAC 1 cut(s) 642
AfiI CCNNNNNNNGG 4 cut(s) 397, 404, 821, 881
AflIII ACRYGT 1 cut(s) 643
AgsI TTSAA 3 cut(s) 302, 847, 890
AhdI GACNNNNNGTC 1 cut(s) 691
AjnI CCWGG 4 cut(s) 411, 462, 816, 880
AjuI GAANNNNNNNTTGG 2 cut(s) 549, 581
AluBI AGCT 4 cut(s) 263, 509, 560, 907
AluI AGCT 4 cut(s) 263, 509, 560, 907
Alw26I GTCTC 4 cut(s) 43, 103, 652, 678
AlwI GGATC 3 cut(s) 40, 672, 776
AoxI GGCC 2 cut(s) 24, 883
AseI ATTAAT 1 cut(s) 726
Asp700I GAANNNNTTC 1 cut(s) 876
AspS9I GGNCC 3 cut(s) 25, 516, 833
AsuC2I CCSGG 1 cut(s) 399
AsuHPI GGTGA 1 cut(s) 49
AsuII TTCGAA 2 cut(s) 555, 900
AvaII GGWCC 2 cut(s) 516, 833
BanII GRGCYC 1 cut(s) 377
BarI GAAGNNNNNNTAC 2 cut(s) 894, 926
BccI CCATC 5 cut(s) 284, 289, 385, 608, 815
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 4 cut(s) 413, 464, 818, 882
BcnI CCSGG 1 cut(s) 399
BcoDI GTCTC 4 cut(s) 43, 103, 652, 678
BfaI CTAG 4 cut(s) 173, 561, 638, 668
BfmI CTRYAG 1 cut(s) 911
Bme1390I CCNGG 5 cut(s) 399, 413, 464, 818, 882
Bme18I GGWCC 2 cut(s) 516, 833
BmeRI GACNNNNNGTC 1 cut(s) 691
BmgT120I GGNCC 3 cut(s) 25, 516, 833
BmrFI CCNGG 5 cut(s) 399, 413, 464, 818, 882
BmrI ACTGGG 1 cut(s) 642
BmsI GCATC 1 cut(s) 694
BmuI ACTGGG 1 cut(s) 642
BplI GAGNNNNNCTC 2 cut(s) 154, 186
Bpu14I TTCGAA 2 cut(s) 555, 900
BpuMI CCSGG 1 cut(s) 399
BsaHI GRCGYC 1 cut(s) 408
BsaJI CCNNGG 3 cut(s) 28, 398, 816
Bsc4I CCNNNNNNNGG 4 cut(s) 397, 404, 821, 881
Bse1I ACTGG 1 cut(s) 637
BseBI CCWGG 4 cut(s) 413, 464, 818, 882
BseDI CCNNGG 3 cut(s) 28, 398, 816
BseGI GGATG 4 cut(s) 300, 553, 682, 826
BseLI CCNNNNNNNGG 4 cut(s) 397, 404, 821, 881
BseMII CTCAG 4 cut(s) 108, 213, 510, 519
BseNI ACTGG 1 cut(s) 637
BseRI GAGGAG 5 cut(s) 61, 64, 67, 70, 199
BshFI GGCC 2 cut(s) 26, 885
BsiSI CCGG 1 cut(s) 398
BslI CCNNNNNNNGG 4 cut(s) 397, 404, 821, 881
BsmAI GTCTC 4 cut(s) 43, 103, 652, 678
BsnI GGCC 2 cut(s) 26, 885
Bsp119I TTCGAA 2 cut(s) 555, 900
Bsp1286I GDGCHC 1 cut(s) 377
Bsp143I GATC 5 cut(s) 32, 664, 720, 733, 781
BspANI GGCC 2 cut(s) 26, 885
BspCNI CTCAG 4 cut(s) 107, 214, 509, 520
BspPI GGATC 3 cut(s) 40, 672, 776
BspQI GCTCTTC 1 cut(s) 897
BspT104I TTCGAA 2 cut(s) 555, 900
BsrI ACTGG 1 cut(s) 637
BssECI CCNNGG 3 cut(s) 28, 398, 816
BssMI GATC 5 cut(s) 32, 664, 720, 733, 781
BssNI GRCGYC 1 cut(s) 408
BssT1I CCWWGG 1 cut(s) 28
Bst2UI CCWGG 4 cut(s) 413, 464, 818, 882
Bst4CI ACNGT 4 cut(s) 269, 314, 771, 833
Bst6I CTCTTC 5 cut(s) 106, 155, 468, 882, 897
BstACI GRCGYC 1 cut(s) 408
BstBI TTCGAA 2 cut(s) 555, 900
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 4 cut(s) 94, 222, 496, 528
BstENI CCTNNNNNAGG 1 cut(s) 879
BstF5I GGATG 4 cut(s) 300, 553, 682, 826
BstKTI GATC 5 cut(s) 35, 667, 723, 736, 784
BstMAI GTCTC 4 cut(s) 43, 103, 652, 678
BstMBI GATC 5 cut(s) 32, 664, 720, 733, 781
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 4 cut(s) 413, 464, 818, 882
BstNSI RCATGY 1 cut(s) 647
BstSCI CCNGG 5 cut(s) 397, 411, 462, 816, 880
BstSFI CTRYAG 1 cut(s) 911
BstX2I RGATCY 2 cut(s) 664, 781
BstYI RGATCY 2 cut(s) 664, 781
BsuRI GGCC 2 cut(s) 26, 885
BtgZI GCGATG 1 cut(s) 717
BtsCI GGATG 4 cut(s) 300, 553, 682, 826
BtsI GCAGTG 2 cut(s) 12, 180
BtsIMutI CAGTG 4 cut(s) 12, 180, 274, 319
Cac8I GCNNGC 1 cut(s) 228
Cfr13I GGNCC 3 cut(s) 25, 516, 833
CseI GACGC 1 cut(s) 397
Csp6I GTAC 1 cut(s) 641
CviAII CATG 2 cut(s) 644, 660
CviQI GTAC 1 cut(s) 641
DdeI CTNAG 4 cut(s) 94, 222, 496, 528
DpnI GATC 5 cut(s) 34, 666, 722, 735, 783
DpnII GATC 5 cut(s) 32, 664, 720, 733, 781
DriI GACNNNNNGTC 1 cut(s) 691
Eam1104I CTCTTC 5 cut(s) 106, 155, 468, 882, 897
Eam1105I GACNNNNNGTC 1 cut(s) 691
EarI CTCTTC 5 cut(s) 106, 155, 468, 882, 897
Eco130I CCWWGG 1 cut(s) 28
Eco147I AGGCCT 1 cut(s) 885
Eco24I GRGCYC 1 cut(s) 377
Eco47I GGWCC 2 cut(s) 516, 833
Eco57I CTGAAG 1 cut(s) 216
EcoNI CCTNNNNNAGG 1 cut(s) 879
EcoRII CCWGG 4 cut(s) 411, 462, 816, 880
EcoT14I CCWWGG 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 377
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 2 cut(s) 647, 663
FalI AAGNNNNNCTT 4 cut(s) 417, 449, 771, 803
FatI CATG 2 cut(s) 643, 659
FokI GGATG 4 cut(s) 307, 560, 689, 833
FriOI GRGCYC 1 cut(s) 377
FspBI CTAG 4 cut(s) 173, 561, 638, 668
HaeIII GGCC 2 cut(s) 26, 885
HapII CCGG 1 cut(s) 398
HgaI GACGC 1 cut(s) 397
Hin1I GRCGYC 1 cut(s) 408
Hin1II CATG 2 cut(s) 647, 663
HindIII AAGCTT 1 cut(s) 261
HinfI GANTC 4 cut(s) 206, 279, 750, 839
HpaII CCGG 1 cut(s) 398
HphI GGTGA 1 cut(s) 49
Hpy188I TCNGA 6 cut(s) 234, 499, 529, 652, 697, 829
Hpy188III TCNNGA 5 cut(s) 611, 674, 737, 747, 836
HpyAV CCTTC 2 cut(s) 244, 296
HpyCH4III ACNGT 4 cut(s) 269, 314, 771, 833
HpyCH4V TGCA 5 cut(s) 17, 180, 202, 422, 707
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 4 cut(s) 94, 222, 496, 528
Hsp92I GRCGYC 1 cut(s) 408
Hsp92II CATG 2 cut(s) 647, 663
Kzo9I GATC 5 cut(s) 32, 664, 720, 733, 781
LguI GCTCTTC 1 cut(s) 897
LweI GCATC 1 cut(s) 694
MaeI CTAG 4 cut(s) 173, 561, 638, 668
MalI GATC 5 cut(s) 34, 666, 722, 735, 783
MboI GATC 5 cut(s) 32, 664, 720, 733, 781
MboII GAAGA 7 cut(s) 93, 172, 347, 485, 791, 869, 914
MfeI CAATTG 1 cut(s) 368
MflI RGATCY 2 cut(s) 664, 781
MhlI GDGCHC 1 cut(s) 377
MluCI AATT 3 cut(s) 368, 534, 762
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 3 cut(s) 147, 675, 753
MroXI GAANNNNTTC 1 cut(s) 876
MseI TTAA 5 cut(s) 113, 453, 717, 726, 765
MspI CCGG 1 cut(s) 398
MspR9I CCNGG 5 cut(s) 399, 413, 464, 818, 882
MunI CAATTG 1 cut(s) 368
MvaI CCWGG 4 cut(s) 413, 464, 818, 882
MwoI GCNNNNNNNGC 1 cut(s) 23
NciI CCSGG 1 cut(s) 399
NdeII GATC 5 cut(s) 32, 664, 720, 733, 781
NlaIII CATG 2 cut(s) 647, 663
NspI RCATGY 1 cut(s) 647
NspV TTCGAA 2 cut(s) 555, 900
PceI AGGCCT 1 cut(s) 885
PciI ACATGT 1 cut(s) 643
PciSI GCTCTTC 1 cut(s) 897
PdmI GAANNNNTTC 1 cut(s) 876
PfeI GAWTC 3 cut(s) 279, 750, 839
PfoI TCCNGGA 1 cut(s) 411
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PscI ACATGT 1 cut(s) 643
PshBI ATTAAT 1 cut(s) 726
Psp6I CCWGG 4 cut(s) 411, 462, 816, 880
PspGI CCWGG 4 cut(s) 411, 462, 816, 880
PspPI GGNCC 3 cut(s) 25, 516, 833
PsuI RGATCY 2 cut(s) 664, 781
RsaI GTAC 1 cut(s) 642
RsaNI GTAC 1 cut(s) 641
SapI GCTCTTC 1 cut(s) 897
SaqAI TTAA 5 cut(s) 113, 453, 717, 726, 765
Sau3AI GATC 5 cut(s) 32, 664, 720, 733, 781
Sau96I GGNCC 3 cut(s) 25, 516, 833
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 5 cut(s) 399, 413, 464, 818, 882
SduI GDGCHC 1 cut(s) 377
SfaNI GCATC 1 cut(s) 694
SfcI CTRYAG 1 cut(s) 911
SfuI TTCGAA 2 cut(s) 555, 900
SinI GGWCC 2 cut(s) 516, 833
Sse9I AATT 3 cut(s) 368, 534, 762
SseBI AGGCCT 1 cut(s) 885
SspI AATATT 1 cut(s) 730
SspMI CTAG 4 cut(s) 173, 561, 638, 668
StuI AGGCCT 1 cut(s) 885
StyD4I CCNGG 5 cut(s) 397, 411, 462, 816, 880
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 4 cut(s) 269, 314, 771, 833
TaqI TCGA 3 cut(s) 555, 736, 900
TasI AATT 3 cut(s) 368, 534, 762
TatI WGTACW 1 cut(s) 640
TfiI GAWTC 3 cut(s) 279, 750, 839
Tru1I TTAA 5 cut(s) 113, 453, 717, 726, 765
Tru9I TTAA 5 cut(s) 113, 453, 717, 726, 765
TscAI CASTG 4 cut(s) 19, 187, 274, 319
TspDTI ATGAA 6 cut(s) 43, 271, 326, 486, 587, 648
TspRI CASTG 4 cut(s) 19, 187, 274, 319
VpaK11BI GGWCC 2 cut(s) 516, 833
VspI ATTAAT 1 cut(s) 726
XagI CCTNNNNNAGG 1 cut(s) 879
XceI RCATGY 1 cut(s) 647
XmnI GAANNNNTTC 1 cut(s) 876
XspI CTAG 4 cut(s) 173, 561, 638, 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.