RLG00000008358

Ribosomal protein S1-like RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0005054
Physical Location & Seq
Forward (+)
29376891 .. 29382968
6078 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008358

Sequence Viewer

Length: 1143 bp
ATGCCTATATACACTGCAACACTGGCCCTTGGATCAGTCTCACGGCTCTTGTTCATCACCAGCGATGCCTCCTCCTCCTCCTCCTCCTCTAATACTTGCTCAGTCTCTTCTTGTTTCTTAAACCACTCCAACTTCCCAAAGCAATCCCACAAGTCTGTCAGCAAGAAGAGAACGTCTCTAGTTTGCTCTGCCAGCAAGACTGAAGTTCAAGACTCCTCTCCCTCTACTGAGCAGGCTCGGAGGTCTGCTGATTGGAAGGTAGCAAAAGCTTACAGCGATAGTGGATTCATCTTTGATGGGATGGTTGAAGGGTATAACAGTGGAGGTTTGCTGGTTCGGTTTCATTCTTTAGTGGGTTTTCTTCCATTTCCACAATTGAGCCCATCACACTTTTGCCAAGAACCAGGGAAAGGCGTCCAGGAGATAGCAAAAGGATTACTTGGTTCTCTTATATCTGTTAAGGTAATCCAAGCAGATGAAGAGAACAAGAAATTGATATTCTCAGAAAAGGAAGCTGTCTGGTCCAAGTTTTCTGAGAAAATTAGTGTTGGGGATGTTTTTGAAGCTAGAGTTGGTTCTGTGGAGGATTATGGTGCTTTTGTTCATCTACTATTTCCTGATGGTCTTTATCATTTGACTGGACTAGTACATGTCTCGGAGGTTTCATGGGATCTAGTTCAGGATGTAAGAGATATTTTGTCGGAGGGCGATGCAGTAAGAGTTAAGATCATTAATATTGATCGAGAAAAGTCAAGAATCACATTATCAATTAAACAGTTGGAGGAAGATCCACTTTTAGAAACATTGGACAAAGTGATACCCCAGGATGGCTCTGACGGTCCTGATTCTTTGAACCCTAACAATAGCAATAATATAGAACCTCTTCCAGGCCTTGAAGCCATATTTGAAGAGCTACTACAGGAAGATGGAATAGATGATGTAGGAATCACTCGCCAAGGATTTGAGAAAAGGGTGGTTTCACAGGATCTGCAGCTTTGGCTTTCTAATTCACCAGCCATTAACCAGAAGTTTACTCTTCTTGCTCGGGCAGGAAGGCAGGTGCAGGAAATACAACTGACAACAACACTTGATCAGGAAGGAATAAAACAAGCACTACAGCGAGTATTGGAGCGCGTCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
S1

Protein Analysis

381

Amino Acids

41.78

Weight (kDa)

5.11

Isoelectric Point (pI)

52.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1 PF00575 182 - 258 1.4e-17 S1 RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1048
Acc36I ACCTGC 1 cut(s) 1048
AccII CGCG 1 cut(s) 1134
AclWI GGATC 4 cut(s) 40, 678, 782, 993
AcuI CTGAAG 1 cut(s) 222
AcyI GRCGYC 1 cut(s) 414
AfaI GTAC 1 cut(s) 648
AfiI CCNNNNNNNGG 3 cut(s) 410, 827, 887
AflIII ACRYGT 1 cut(s) 649
AgsI TTSAA 6 cut(s) 209, 308, 563, 853, 896, 908
AhlI ACTAGT 1 cut(s) 643
AjnI CCWGG 4 cut(s) 403, 417, 822, 886
AjuI GAANNNNNNNTTGG 2 cut(s) 555, 587
AluBI AGCT 5 cut(s) 269, 515, 566, 913, 994
AluI AGCT 5 cut(s) 269, 515, 566, 913, 994
Alw26I GTCTC 4 cut(s) 43, 109, 180, 658
AlwI GGATC 4 cut(s) 40, 678, 782, 993
AlwNI CAGNNNCTG 1 cut(s) 988
Ama87I CYCGRG 1 cut(s) 1044
AoxI GGCC 2 cut(s) 24, 889
ApeKI GCWGC 1 cut(s) 991
AseI ATTAAT 1 cut(s) 732
Asp700I GAANNNNTTC 1 cut(s) 882
AspLEI GCGC 1 cut(s) 1134
AspS9I GGNCC 3 cut(s) 25, 522, 839
AsuHPI GGTGA 2 cut(s) 49, 1002
AvaI CYCGRG 1 cut(s) 1044
AvaII GGWCC 2 cut(s) 522, 839
BanII GRGCYC 1 cut(s) 383
BarI GAAGNNNNNNTAC 2 cut(s) 900, 932
BbvI GCAGC 1 cut(s) 1003
BccI CCATC 6 cut(s) 290, 295, 391, 614, 821, 920
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 4 cut(s) 405, 419, 824, 888
BclI TGATCA 1 cut(s) 1090
BcoDI GTCTC 4 cut(s) 43, 109, 180, 658
BcuI ACTAGT 1 cut(s) 643
BfaI CTAG 4 cut(s) 179, 567, 644, 674
BfmI CTRYAG 3 cut(s) 917, 989, 1115
BfuAI ACCTGC 1 cut(s) 1048
BisI GCNGC 1 cut(s) 992
BlsI GCNGC 1 cut(s) 993
Bme1390I CCNGG 4 cut(s) 405, 419, 824, 888
Bme18I GGWCC 2 cut(s) 522, 839
BmeT110I CYCGRG 1 cut(s) 1044
BmgT120I GGNCC 3 cut(s) 25, 522, 839
BmrFI CCNGG 4 cut(s) 405, 419, 824, 888
BmsI GCATC 2 cut(s) 55, 700
BplI GAGNNNNNCTC 2 cut(s) 160, 192
BsaHI GRCGYC 1 cut(s) 414
BsaJI CCNNGG 4 cut(s) 28, 404, 822, 955
Bsc4I CCNNNNNNNGG 3 cut(s) 410, 827, 887
Bse1I ACTGG 2 cut(s) 27, 643
BseBI CCWGG 4 cut(s) 405, 419, 824, 888
BseDI CCNNGG 4 cut(s) 28, 404, 822, 955
BseGI GGATG 4 cut(s) 306, 559, 688, 832
BseLI CCNNNNNNNGG 3 cut(s) 410, 827, 887
BseMII CTCAG 4 cut(s) 114, 219, 516, 525
BseNI ACTGG 2 cut(s) 27, 643
BseRI GAGGAG 7 cut(s) 61, 64, 67, 70, 73, 76, 205
BseXI GCAGC 1 cut(s) 1003
BsgI GTGCAG 1 cut(s) 1082
Bsh1236I CGCG 1 cut(s) 1134
BshFI GGCC 2 cut(s) 26, 891
BsiHKCI CYCGRG 1 cut(s) 1044
BslFI GGGAC 1 cut(s) 1121
BslI CCNNNNNNNGG 3 cut(s) 410, 827, 887
BsmAI GTCTC 4 cut(s) 43, 109, 180, 658
BsmBI CGTCTC 1 cut(s) 180
BsmFI GGGAC 1 cut(s) 1121
BsnI GGCC 2 cut(s) 26, 891
BsoBI CYCGRG 1 cut(s) 1044
Bsp1286I GDGCHC 1 cut(s) 383
Bsp143I GATC 7 cut(s) 32, 670, 726, 739, 787, 985, 1090
BspANI GGCC 2 cut(s) 26, 891
BspCNI CTCAG 4 cut(s) 113, 220, 515, 526
BspFNI CGCG 1 cut(s) 1134
BspMAI CTGCAG 1 cut(s) 993
BspMI ACCTGC 1 cut(s) 1048
BspPI GGATC 4 cut(s) 40, 678, 782, 993
BspQI GCTCTTC 1 cut(s) 903
BsrI ACTGG 2 cut(s) 27, 643
BssECI CCNNGG 4 cut(s) 28, 404, 822, 955
BssMI GATC 7 cut(s) 32, 670, 726, 739, 787, 985, 1090
BssNI GRCGYC 1 cut(s) 414
BssT1I CCWWGG 2 cut(s) 28, 955
Bst2UI CCWGG 4 cut(s) 405, 419, 824, 888
Bst4CI ACNGT 3 cut(s) 320, 777, 839
Bst6I CTCTTC 6 cut(s) 112, 161, 474, 888, 903, 1041
BstACI GRCGYC 1 cut(s) 414
BstC8I GCNNGC 2 cut(s) 193, 234
BstDEI CTNAG 4 cut(s) 100, 228, 502, 534
BstENI CCTNNNNNAGG 1 cut(s) 885
BstF5I GGATG 4 cut(s) 306, 559, 688, 832
BstFNI CGCG 1 cut(s) 1134
BstHHI GCGC 1 cut(s) 1134
BstKTI GATC 7 cut(s) 35, 673, 729, 742, 790, 988, 1093
BstMAI GTCTC 4 cut(s) 43, 109, 180, 658
BstMBI GATC 7 cut(s) 32, 670, 726, 739, 787, 985, 1090
BstMWI GCNNNNNNNGC 3 cut(s) 23, 192, 997
BstNI CCWGG 4 cut(s) 405, 419, 824, 888
BstNSI RCATGY 1 cut(s) 653
BstSCI CCNGG 4 cut(s) 403, 417, 822, 886
BstSFI CTRYAG 3 cut(s) 917, 989, 1115
BstUI CGCG 1 cut(s) 1134
BstV1I GCAGC 1 cut(s) 1003
BstX2I RGATCY 3 cut(s) 670, 787, 985
BstYI RGATCY 3 cut(s) 670, 787, 985
BsuRI GGCC 2 cut(s) 26, 891
BtgZI GCGATG 2 cut(s) 78, 723
BtsCI GGATG 4 cut(s) 306, 559, 688, 832
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 12, 20, 325
BveI ACCTGC 1 cut(s) 1048
Cac8I GCNNGC 2 cut(s) 193, 234
CaiI CAGNNNCTG 1 cut(s) 988
CfoI GCGC 1 cut(s) 1134
Cfr13I GGNCC 3 cut(s) 25, 522, 839
CseI GACGC 2 cut(s) 403, 1123
Csp6I GTAC 1 cut(s) 647
CviAII CATG 2 cut(s) 650, 666
CviQI GTAC 1 cut(s) 647
DdeI CTNAG 4 cut(s) 100, 228, 502, 534
DpnI GATC 7 cut(s) 34, 672, 728, 741, 789, 987, 1092
DpnII GATC 7 cut(s) 32, 670, 726, 739, 787, 985, 1090
Eam1104I CTCTTC 6 cut(s) 112, 161, 474, 888, 903, 1041
EarI CTCTTC 6 cut(s) 112, 161, 474, 888, 903, 1041
Eco130I CCWWGG 2 cut(s) 28, 955
Eco147I AGGCCT 1 cut(s) 891
Eco24I GRGCYC 1 cut(s) 383
Eco47I GGWCC 2 cut(s) 522, 839
Eco57I CTGAAG 1 cut(s) 222
Eco88I CYCGRG 1 cut(s) 1044
EcoNI CCTNNNNNAGG 1 cut(s) 885
EcoRII CCWGG 4 cut(s) 403, 417, 822, 886
EcoT14I CCWWGG 2 cut(s) 28, 955
EcoT38I GRGCYC 1 cut(s) 383
ErhI CCWWGG 2 cut(s) 28, 955
Esp3I CGTCTC 1 cut(s) 180
FaeI CATG 2 cut(s) 653, 669
FalI AAGNNNNNCTT 4 cut(s) 423, 455, 777, 809
FaqI GGGAC 1 cut(s) 1121
FatI CATG 2 cut(s) 649, 665
FbaI TGATCA 1 cut(s) 1090
Fnu4HI GCNGC 1 cut(s) 992
FokI GGATG 4 cut(s) 313, 566, 695, 839
FriOI GRGCYC 1 cut(s) 383
Fsp4HI GCNGC 1 cut(s) 992
FspBI CTAG 4 cut(s) 179, 567, 644, 674
GlaI GCGC 1 cut(s) 1133
GluI GCNGC 1 cut(s) 992
HaeIII GGCC 2 cut(s) 26, 891
HgaI GACGC 2 cut(s) 403, 1123
HhaI GCGC 1 cut(s) 1134
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 2 cut(s) 653, 669
Hin6I GCGC 1 cut(s) 1132
HinP1I GCGC 1 cut(s) 1132
HindIII AAGCTT 1 cut(s) 267
HinfI GANTC 5 cut(s) 212, 285, 756, 845, 945
HphI GGTGA 2 cut(s) 49, 1002
Hpy166II GTNNAC 1 cut(s) 1032
Hpy188I TCNGA 6 cut(s) 240, 505, 535, 658, 703, 835
Hpy188III TCNNGA 7 cut(s) 209, 617, 680, 743, 753, 842, 1094
Hpy8I GTNNAC 1 cut(s) 1032
HpyAV CCTTC 4 cut(s) 250, 302, 1047, 1091
HpyCH4III ACNGT 3 cut(s) 320, 777, 839
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 4 cut(s) 17, 713, 991, 1063
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 192, 997
HpyF3I CTNAG 4 cut(s) 100, 228, 502, 534
HpySE526I ACGT 1 cut(s) 173
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 2 cut(s) 653, 669
HspAI GCGC 1 cut(s) 1132
Ksp22I TGATCA 1 cut(s) 1090
Kzo9I GATC 7 cut(s) 32, 670, 726, 739, 787, 985, 1090
LguI GCTCTTC 1 cut(s) 903
LmnI GCTCC 1 cut(s) 1129
Lsp1109I GCAGC 1 cut(s) 1003
LweI GCATC 2 cut(s) 55, 700
MaeI CTAG 4 cut(s) 179, 567, 644, 674
MaeII ACGT 1 cut(s) 173
MalI GATC 7 cut(s) 34, 672, 728, 741, 789, 987, 1092
MboI GATC 7 cut(s) 32, 670, 726, 739, 787, 985, 1090
MboII GAAGA 9 cut(s) 99, 178, 353, 491, 797, 875, 920, 935, 1028
MfeI CAATTG 1 cut(s) 374
MflI RGATCY 3 cut(s) 670, 787, 985
MhlI GDGCHC 1 cut(s) 383
MluCI AATT 5 cut(s) 374, 491, 540, 768, 1006
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 3 cut(s) 153, 681, 759
MroXI GAANNNNTTC 1 cut(s) 882
MseI TTAA 6 cut(s) 119, 459, 723, 732, 771, 1020
MspR9I CCNGG 4 cut(s) 405, 419, 824, 888
MunI CAATTG 1 cut(s) 374
MvaI CCWGG 4 cut(s) 405, 419, 824, 888
MvnI CGCG 1 cut(s) 1134
MwoI GCNNNNNNNGC 3 cut(s) 23, 192, 997
NdeII GATC 7 cut(s) 32, 670, 726, 739, 787, 985, 1090
NlaIII CATG 2 cut(s) 653, 669
NspI RCATGY 1 cut(s) 653
PaqCI CACCTGC 1 cut(s) 1048
PceI AGGCCT 1 cut(s) 891
PciI ACATGT 1 cut(s) 649
PciSI GCTCTTC 1 cut(s) 903
PdmI GAANNNNTTC 1 cut(s) 882
PfeI GAWTC 4 cut(s) 285, 756, 845, 945
PfoI TCCNGGA 1 cut(s) 417
PkrI GCNGC 1 cut(s) 993
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
PscI ACATGT 1 cut(s) 649
PshBI ATTAAT 1 cut(s) 732
Psp6I CCWGG 4 cut(s) 403, 417, 822, 886
PspGI CCWGG 4 cut(s) 403, 417, 822, 886
PspPI GGNCC 3 cut(s) 25, 522, 839
PstI CTGCAG 1 cut(s) 993
PstNI CAGNNNCTG 1 cut(s) 988
PsuI RGATCY 3 cut(s) 670, 787, 985
RsaI GTAC 1 cut(s) 648
RsaNI GTAC 1 cut(s) 647
SapI GCTCTTC 1 cut(s) 903
SaqAI TTAA 6 cut(s) 119, 459, 723, 732, 771, 1020
SatI GCNGC 1 cut(s) 992
Sau3AI GATC 7 cut(s) 32, 670, 726, 739, 787, 985, 1090
Sau96I GGNCC 3 cut(s) 25, 522, 839
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 4 cut(s) 405, 419, 824, 888
SduI GDGCHC 1 cut(s) 383
SfaNI GCATC 2 cut(s) 55, 700
SfcI CTRYAG 3 cut(s) 917, 989, 1115
SinI GGWCC 2 cut(s) 522, 839
SpeI ACTAGT 1 cut(s) 643
Sse9I AATT 5 cut(s) 374, 491, 540, 768, 1006
SseBI AGGCCT 1 cut(s) 891
SspI AATATT 1 cut(s) 736
SspMI CTAG 4 cut(s) 179, 567, 644, 674
StuI AGGCCT 1 cut(s) 891
StyD4I CCNGG 4 cut(s) 403, 417, 822, 886
StyI CCWWGG 2 cut(s) 28, 955
TaaI ACNGT 3 cut(s) 320, 777, 839
TaiI ACGT 1 cut(s) 176
TaqI TCGA 1 cut(s) 742
TasI AATT 5 cut(s) 374, 491, 540, 768, 1006
TatI WGTACW 1 cut(s) 646
TfiI GAWTC 4 cut(s) 285, 756, 845, 945
Tru1I TTAA 6 cut(s) 119, 459, 723, 732, 771, 1020
Tru9I TTAA 6 cut(s) 119, 459, 723, 732, 771, 1020
TscAI CASTG 3 cut(s) 19, 27, 325
TseI GCWGC 1 cut(s) 991
TspDTI ATGAA 6 cut(s) 43, 277, 332, 492, 593, 654
TspRI CASTG 3 cut(s) 19, 27, 325
VpaK11BI GGWCC 2 cut(s) 522, 839
VspI ATTAAT 1 cut(s) 732
XagI CCTNNNNNAGG 1 cut(s) 885
XceI RCATGY 1 cut(s) 653
XmnI GAANNNNTTC 1 cut(s) 882
XspI CTAG 4 cut(s) 179, 567, 644, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.