Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000629.1

Orthogroup ID

OG0005054

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3284

Gene Structure 3284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000629.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 883 bp

aatagatgatgtaggaatcactcgccaaggatttgagaaaagggtggtttcacaggacctgcagctttggctttctaattcaccagccattaaccagaagtttaccctccttgctcgggcaggaaggcaggtacaggaaatacaactgacgacaacacttgatcaggaaggtataaaacaagcactccagcgacccgccggagctgttgttaggtctgggccaagttgtgaatcaccgcacatatatgagatggagccgagtcttgacaaagcggcactccttctccaaggacggctcaagtacaatgatcctcggaggggttatgttgaaaataggggaaggatgtcggcagcggaggaggaggagtcaagtgaggcaggcaccatggacgaagaggttttgaagctcaaagagaaggttagcactatcactaatgtcttctctattactagatattctgcattgcattctaactggtgctgtgtcagctttctcaatgccgactcgaaagggagcggctccttacggagaaaaagagatggaggatcaaggagaaacttctcatgcgggctatggaacgaattggccaaactagatgacgaattggccaaactagaagaggaacagtacaggttttttgataaaatcactgatgatttgaaggctctggtgagagaccactatactcgatatattgagacactcaagactgatgacgatgagtatgcactgaaaaaatttatggatgttattctaccaccgggttcttttcagcagcaaattgttgagtctatatctccaatctctgctgaagtgtcaaagattttgaacttctttctaagaaaaaagacgcagtccaacgatgtgaaggtgatatattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

293

Amino Acids

33.33

Weight (kDa)

6.09

Isoelectric Point (pI)

55.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23700
fragaria_vesca	FvH4_4g12580 FvH4_4g12580 FvH4_4g12580 FvH4_4g12580 FvH4_4g12580 FvH4_4g12580 FvH4_4g12580 FvH4_4g12580
malus_domestica	MD04G1024000.v1.1
prunus_persica	Prupe.1G174400_v2.0.a1 Prupe.1G174400_v2.0.a1 Prupe.1G174400_v2.0.a1 Prupe.1G174400_v2.0.a1 Prupe.1G174400_v2.0.a1
pyrus_communis	pycom04g02070
rosa_chinensis	RchiOBHm_Chr4g0411421
rosa_laevigata	RLG00000008358
rosa_multiflora	Rmu_sc0000629.1_g000001 Rmu_sc0001982.1_g000016
rosa_roxburghii	Rroxscaffold_5G00356040
rosa_rugosa	Rorug04G0109000 Rorug04G0109000
rosa_samantha	Rh4AG168000 Rh4BG164800 Rh4BG164900 Rh4CG179600 Rh4DG162600
rosa_wichuraiana	Rw4G013880 Rw4G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	67, 119
AccB1I	GGYRCC	1 cut(s)	381
AccBSI	CCGCTC	1 cut(s)	517
AciI	CCGC	6 cut(s)	196, 237, 273, 354, 517, 568
AclWI	GGATC	2 cut(s)	303, 554
AcoI	YGGCCR	2 cut(s)	586, 607
AcsI	RAATTY	1 cut(s)	738
AcuI	CTGAAG	1 cut(s)	832
AfaI	GTAC	3 cut(s)	133, 303, 630
AfiI	CCNNNNNNNGG	2 cut(s)	116, 318
AgsI	TTSAA	4 cut(s)	330, 404, 662, 830
AluBI	AGCT	4 cut(s)	65, 204, 407, 490
AluI	AGCT	4 cut(s)	65, 204, 407, 490
Alw26I	GTCTC	2 cut(s)	670, 693
AlwI	GGATC	2 cut(s)	303, 554
AlwNI	CAGNNNCTG	1 cut(s)	59
Ama87I	CYCGRG	1 cut(s)	115
AoxI	GGCC	3 cut(s)	219, 586, 607
ApeKI	GCWGC	3 cut(s)	62, 351, 776
ApoI	RAATTY	1 cut(s)	738
AspS9I	GGNCC	2 cut(s)	56, 219
AsuC2I	CCSGG	1 cut(s)	763
AsuHPI	GGTGA	3 cut(s)	73, 226, 683
AvaI	CYCGRG	1 cut(s)	115
AvaII	GGWCC	1 cut(s)	56
BalI	TGGCCA	2 cut(s)	588, 609
BanI	GGYRCC	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	431
BbvI	GCAGC	3 cut(s)	74, 363, 788
BccI	CCATC	2 cut(s)	245, 534
BceAI	ACGGC	1 cut(s)	309
BcgI	CGANNNNNNTGC	2 cut(s)	708, 742
BclI	TGATCA	1 cut(s)	161
BcnI	CCSGG	1 cut(s)	763
BcoDI	GTCTC	2 cut(s)	670, 693
BfaI	CTAG	3 cut(s)	451, 594, 615
BfmI	CTRYAG	1 cut(s)	60
BfuAI	ACCTGC	2 cut(s)	67, 119
BisI	GCNGC	5 cut(s)	63, 274, 352, 518, 777
BlsI	GCNGC	5 cut(s)	64, 275, 353, 519, 778
Bme1390I	CCNGG	1 cut(s)	763
Bme18I	GGWCC	1 cut(s)	56
BmeT110I	CYCGRG	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	56, 219
BmiI	GGNNCC	3 cut(s)	256, 383, 521
BmrFI	CCNGG	1 cut(s)	763
BpiI	GAAGAC	1 cut(s)	431
BpmI	CTGGAG	1 cut(s)	171
BpuEI	CTTGAG	2 cut(s)	282, 690
BpuMI	CCSGG	1 cut(s)	763
BsaI	GGTCTC	1 cut(s)	670
BsaJI	CCNNGG	4 cut(s)	26, 287, 312, 385
BsaXI	ACNNNNNCTCC	8 cut(s)	169, 193, 199, 223, 268, 298, 351, 381
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 318
Bse1I	ACTGG	1 cut(s)	480
Bse3DI	GCAATG	1 cut(s)	462
BseDI	CCNNGG	4 cut(s)	26, 287, 312, 385
BseGI	GGATG	2 cut(s)	349, 752
BseLI	CCNNNNNNNGG	2 cut(s)	116, 318
BseMI	GCAATG	1 cut(s)	462
BseNI	ACTGG	1 cut(s)	480
BseRI	GAGGAG	3 cut(s)	372, 375, 378
BseXI	GCAGC	3 cut(s)	74, 363, 788
BshFI	GGCC	3 cut(s)	221, 588, 609
BshNI	GGYRCC	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	115
BsiSI	CCGG	2 cut(s)	199, 762
BslI	CCNNNNNNNGG	2 cut(s)	116, 318
BsmAI	GTCTC	2 cut(s)	670, 693
BsmI	GAATGC	1 cut(s)	467
BsnI	GGCC	3 cut(s)	221, 588, 609
Bso31I	GGTCTC	1 cut(s)	670
BsoBI	CYCGRG	1 cut(s)	115
Bsp143I	GATC	3 cut(s)	161, 308, 546
Bsp19I	CCATGG	1 cut(s)	385
BspACI	CCGC	6 cut(s)	196, 237, 273, 354, 517, 568
BspANI	GGCC	3 cut(s)	221, 588, 609
BspLI	GGNNCC	3 cut(s)	256, 383, 521
BspMAI	CTGCAG	1 cut(s)	64
BspMI	ACCTGC	2 cut(s)	67, 119
BspPI	GGATC	2 cut(s)	303, 554
BspT107I	GGYRCC	1 cut(s)	381
BspTNI	GGTCTC	1 cut(s)	670
BsrBI	CCGCTC	1 cut(s)	517
BsrDI	GCAATG	1 cut(s)	462
BsrI	ACTGG	1 cut(s)	480
BssECI	CCNNGG	4 cut(s)	26, 287, 312, 385
BssMI	GATC	3 cut(s)	161, 308, 546
BssT1I	CCWWGG	3 cut(s)	26, 287, 385
Bst4CI	ACNGT	1 cut(s)	628
Bst6I	CTCTTC	2 cut(s)	388, 613
BstC8I	GCNNGC	2 cut(s)	380, 570
BstDEI	CTNAG	1 cut(s)	840
BstDSI	CCRYGG	1 cut(s)	385
BstF5I	GGATG	2 cut(s)	349, 752
BstKTI	GATC	3 cut(s)	164, 311, 549
BstMAI	GTCTC	2 cut(s)	670, 693
BstMBI	GATC	3 cut(s)	161, 308, 546
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 487
BstSCI	CCNGG	1 cut(s)	761
BstSFI	CTRYAG	1 cut(s)	60
BstV1I	GCAGC	3 cut(s)	74, 363, 788
BstV2I	GAAGAC	1 cut(s)	431
BsuRI	GGCC	3 cut(s)	221, 588, 609
BtgI	CCRYGG	1 cut(s)	385
BtsCI	GGATG	2 cut(s)	349, 752
BtsIMutI	CAGTG	2 cut(s)	649, 729
BveI	ACCTGC	2 cut(s)	67, 119
Cac8I	GCNNGC	2 cut(s)	380, 570
CaiI	CAGNNNCTG	1 cut(s)	59
Cfr13I	GGNCC	2 cut(s)	56, 219
CseI	GACGC	1 cut(s)	860
Csp6I	GTAC	3 cut(s)	132, 302, 629
CviAII	CATG	2 cut(s)	386, 565
CviQI	GTAC	3 cut(s)	132, 302, 629
DdeI	CTNAG	1 cut(s)	840
DpnI	GATC	3 cut(s)	163, 310, 548
DpnII	GATC	3 cut(s)	161, 308, 546
EaeI	YGGCCR	2 cut(s)	586, 607
Eam1104I	CTCTTC	2 cut(s)	388, 613
EarI	CTCTTC	2 cut(s)	388, 613
Eco130I	CCWWGG	3 cut(s)	26, 287, 385
Eco31I	GGTCTC	1 cut(s)	670
Eco47I	GGWCC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	832
Eco88I	CYCGRG	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	56
EcoT14I	CCWWGG	3 cut(s)	26, 287, 385
ErhI	CCWWGG	3 cut(s)	26, 287, 385
FaeI	CATG	2 cut(s)	389, 568
FatI	CATG	2 cut(s)	385, 564
FauI	CCCGC	2 cut(s)	203, 561
FbaI	TGATCA	1 cut(s)	161
Fnu4HI	GCNGC	5 cut(s)	63, 274, 352, 518, 777
FokI	GGATG	2 cut(s)	356, 759
Fsp4HI	GCNGC	5 cut(s)	63, 274, 352, 518, 777
FspBI	CTAG	3 cut(s)	451, 594, 615
GluI	GCNGC	5 cut(s)	63, 274, 352, 518, 777
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	3 cut(s)	221, 588, 609
HapII	CCGG	2 cut(s)	199, 762
HgaI	GACGC	1 cut(s)	860
Hin1II	CATG	2 cut(s)	389, 568
HinfI	GANTC	6 cut(s)	16, 231, 260, 366, 504, 789
HpaII	CCGG	2 cut(s)	199, 762
HphI	GGTGA	3 cut(s)	73, 226, 683
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	316
Hpy188III	TCNNGA	3 cut(s)	165, 264, 707
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	7 cut(s)	118, 162, 291, 334, 410, 656, 863
HpyCH4III	ACNGT	1 cut(s)	628
HpyCH4V	TGCA	4 cut(s)	62, 462, 467, 729
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 487
HpyF3I	CTNAG	1 cut(s)	840
Hsp92II	CATG	2 cut(s)	389, 568
Ksp22I	TGATCA	1 cut(s)	161
Kzo9I	GATC	3 cut(s)	161, 308, 546
LmnI	GCTCC	4 cut(s)	201, 254, 514, 525
Lsp1109I	GCAGC	3 cut(s)	74, 363, 788
MaeI	CTAG	3 cut(s)	451, 594, 615
MalI	GATC	3 cut(s)	163, 310, 548
MbiI	CCGCTC	1 cut(s)	517
MboI	GATC	3 cut(s)	161, 308, 546
MboII	GAAGA	3 cut(s)	405, 431, 630
MlsI	TGGCCA	2 cut(s)	588, 609
MluCI	AATT	5 cut(s)	77, 582, 603, 738, 781
MluNI	TGGCCA	2 cut(s)	588, 609
MlyI	GAGTC	4 cut(s)	269, 375, 498, 798
MmeI	TCCRAC	1 cut(s)	883
Mox20I	TGGCCA	2 cut(s)	588, 609
MscI	TGGCCA	2 cut(s)	588, 609
MseI	TTAA	1 cut(s)	91
MslI	CAYNNNNRTG	1 cut(s)	244
Msp20I	TGGCCA	2 cut(s)	588, 609
MspA1I	CMGCKG	1 cut(s)	354
MspI	CCGG	2 cut(s)	199, 762
MspR9I	CCNGG	1 cut(s)	763
Mva1269I	GAATGC	1 cut(s)	467
MwoI	GCNNNNNNNGC	2 cut(s)	68, 487
NciI	CCSGG	1 cut(s)	763
NcoI	CCATGG	1 cut(s)	385
NdeII	GATC	3 cut(s)	161, 308, 546
NlaIII	CATG	2 cut(s)	389, 568
NlaIV	GGNNCC	3 cut(s)	256, 383, 521
NmeAIII	GCCGAG	1 cut(s)	283
PctI	GAATGC	1 cut(s)	467
PfeI	GAWTC	2 cut(s)	16, 231
PflFI	GACNNNGTC	1 cut(s)	854
PkrI	GCNGC	5 cut(s)	64, 275, 353, 519, 778
PleI	GAGTC	4 cut(s)	268, 374, 498, 797
PpsI	GAGTC	4 cut(s)	268, 374, 498, 797
PpuMI	RGGWCCY	1 cut(s)	56
Psp5II	RGGWCCY	1 cut(s)	56
PspN4I	GGNNCC	3 cut(s)	256, 383, 521
PspPI	GGNCC	2 cut(s)	56, 219
PspPPI	RGGWCCY	1 cut(s)	56
PstI	CTGCAG	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	59
PsyI	GACNNNGTC	1 cut(s)	854
RsaI	GTAC	3 cut(s)	133, 303, 630
RsaNI	GTAC	3 cut(s)	132, 302, 629
RseI	CAYNNNNRTG	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	91
SatI	GCNGC	5 cut(s)	63, 274, 352, 518, 777
Sau3AI	GATC	3 cut(s)	161, 308, 546
Sau96I	GGNCC	2 cut(s)	56, 219
SchI	GAGTC	4 cut(s)	269, 375, 498, 798
ScrFI	CCNGG	1 cut(s)	763
SfcI	CTRYAG	1 cut(s)	60
SinI	GGWCC	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	244
SmlI	CTYRAG	2 cut(s)	297, 705
SmoI	CTYRAG	2 cut(s)	297, 705
Sse9I	AATT	5 cut(s)	77, 582, 603, 738, 781
SsiI	CCGC	6 cut(s)	196, 237, 273, 354, 517, 568
SspMI	CTAG	3 cut(s)	451, 594, 615
StyD4I	CCNGG	1 cut(s)	761
StyI	CCWWGG	3 cut(s)	26, 287, 385
TaaI	ACNGT	1 cut(s)	628
TaqI	TCGA	2 cut(s)	507, 689
TasI	AATT	5 cut(s)	77, 582, 603, 738, 781
TatI	WGTACW	2 cut(s)	301, 628
TauI	GCSGC	2 cut(s)	276, 520
TfiI	GAWTC	2 cut(s)	16, 231
Tru1I	TTAA	1 cut(s)	91
Tru9I	TTAA	1 cut(s)	91
TscAI	CASTG	2 cut(s)	656, 736
TseI	GCWGC	3 cut(s)	62, 351, 776
TspGWI	ACGGA	1 cut(s)	542
TspRI	CASTG	2 cut(s)	656, 736
Tth111I	GACNNNGTC	1 cut(s)	854
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	1 cut(s)	738
XspI	CTAG	3 cut(s)	451, 594, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.