Prupe.1G174400_v2.0.a1

Ribosomal protein S1-like RNA-binding domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
14670900 .. 14680186
9287 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G174400.4

Sequence Viewer

Length: 1167 bp
ATGCCACTATACAGTGCTACTCTGGCACTGGGTTCAGTCTCGCAGCTCTTTATTACCGGCGATGCCATTGCCTCCTCTAAGAACCATAATTCTTGTTCAGTATCTTGCGTCTTCAACCACATCAACTTCTCAAAGCTCTCTCACAAGTCTCTTTGCAAGAAAAGATCGTCAGTTTTTGCTGCGAGCAGAGTATCCAATACTGACAATTCCGGCCTTGTGCACGACACGTCTACCTCTACAGACGAGGACCTTCAAGAGGCTCGGATATCTGCTGATTGGAAGGTAGCAAAGGCTTATAGTGACAGTGGATTAATCTATGAGGGGATGATTGAAGGATATAATGGCGGAGGTTTGCTGGTTCGGTTTCATTCTCTAGTGGGTTTTCTTCCATTTCCACAGTTGAGCCCATCACATTTTTGCAAAGAACGGGGAAAAAGCCTCCAAGACATTGCAAAAGGTTTACCTGGTTCACTTATATCTGTGAAGGTAATCCAAGTAGACGAAGAGCACAAGAAACTGATATTCTCAGAAAAGGAAGCTGTCTGGTCGAAGTTTTCTGAGCAAATTAATGTTGGGGATATTTTTGAAGCTAGGGTGGGTTCTATAGAGGATTATGGTGCATTTGTTCACCTACGATTTCCTGATGGTCTTTATCATCTGACCGGACTAGTACATGTCTCAGAGGTTTCATGGGATTTAGTTCAGGATGTACGAGACATTTTAAATGAGGGTGATGATGTAAGGGTCAAAATTATTAATATCGATAGAGTAAAGTCAAGAATTACACTTTCCATTAAACAGTTGGAGGAAGATCCACTTCTAGAAACATTGGACAAAGTAATACCACAGGATGGCTCTGTAGGTCCTGATTCTTTGAGCACTGATAATAGCAGCAATATAGAACCTCTTCCAGGCCTTGAAGCGATATTTGAAGAGCTAGTACGGGAAGATGGCATAGATGATGTAAGAATCAATCGCCAGGGGTTTGAGAAAAGAGTGGTTTCCCAGGACCTGCAGCTTTGGCTTTCAAATTCACCGGCCGTTAACCAGAAGTTTACTCTTCTTGCTCGAGCAGGAAGGCAGGTCCAGGAAATACAACTGACAACAACACTTGATCAGGAAGGTATCAAAAAAGCACTACAGCGAGTATTGGAGCGTGTGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

389

Amino Acids

42.98

Weight (kDa)

5.38

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1020, 1072
AccB7I CCANNNNNTGG 1 cut(s) 851
AccI GTMKAC 2 cut(s) 230, 498
AciI CCGC 1 cut(s) 345
AclWI GGATC 1 cut(s) 806
AcoI YGGCCR 1 cut(s) 1038
AcsI RAATTY 1 cut(s) 1030
AfaI GTAC 3 cut(s) 672, 711, 942
AfiI CCNNNNNNNGG 3 cut(s) 256, 851, 911
AflIII ACRYGT 2 cut(s) 225, 673
AgsI TTSAA 7 cut(s) 115, 254, 332, 587, 920, 932, 1029
AhlI ACTAGT 1 cut(s) 667
AjiI CACGTC 1 cut(s) 228
AjnI CCWGG 5 cut(s) 463, 910, 978, 1005, 1086
AluBI AGCT 6 cut(s) 46, 136, 539, 590, 937, 1018
AluI AGCT 6 cut(s) 46, 136, 539, 590, 937, 1018
Alw21I GWGCWC 3 cut(s) 222, 510, 881
Alw26I GTCTC 4 cut(s) 43, 153, 682, 708
Alw44I GTGCAC 1 cut(s) 218
AlwI GGATC 1 cut(s) 806
AlwNI CAGNNNCTG 1 cut(s) 1012
Ama87I CYCGRG 1 cut(s) 1068
AoxI GGCC 3 cut(s) 211, 913, 1038
ApaLI GTGCAC 1 cut(s) 218
ApeKI GCWGC 4 cut(s) 43, 179, 891, 1015
ApoI RAATTY 1 cut(s) 1030
AseI ATTAAT 3 cut(s) 311, 567, 756
Asp700I GAANNNNTTC 1 cut(s) 906
AspS9I GGNCC 4 cut(s) 247, 863, 1009, 1084
AsuHPI GGTGA 3 cut(s) 620, 743, 1026
AvaI CYCGRG 1 cut(s) 1068
AvaII GGWCC 4 cut(s) 247, 863, 1009, 1084
BaeGI GKGCMC 1 cut(s) 222
BanII GRGCYC 1 cut(s) 407
BarI GAAGNNNNNNTAC 2 cut(s) 924, 956
BbsI GAAGAC 1 cut(s) 103
Bbv12I GWGCWC 3 cut(s) 222, 510, 881
BbvI GCAGC 4 cut(s) 55, 166, 903, 1027
BccI CCATC 4 cut(s) 415, 638, 845, 944
BceAI ACGGC 1 cut(s) 1025
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BciT130I CCWGG 5 cut(s) 465, 912, 980, 1007, 1088
BciVI GTATCC 1 cut(s) 202
BclI TGATCA 1 cut(s) 1114
BcoDI GTCTC 4 cut(s) 43, 153, 682, 708
BcuI ACTAGT 1 cut(s) 667
BfaI CTAG 5 cut(s) 374, 591, 668, 821, 938
BfmI CTRYAG 5 cut(s) 237, 603, 858, 1013, 1139
BfuAI ACCTGC 2 cut(s) 1020, 1072
BfuI GTATCC 1 cut(s) 202
BisI GCNGC 4 cut(s) 44, 180, 892, 1016
BlsI GCNGC 4 cut(s) 45, 181, 893, 1017
Bme1390I CCNGG 5 cut(s) 465, 912, 980, 1007, 1088
Bme18I GGWCC 4 cut(s) 247, 863, 1009, 1084
BmeT110I CYCGRG 1 cut(s) 1068
BmgBI CACGTC 1 cut(s) 228
BmgT120I GGNCC 4 cut(s) 247, 863, 1009, 1084
BmrFI CCNGG 5 cut(s) 465, 912, 980, 1007, 1088
BmrI ACTGGG 1 cut(s) 38
BmsI GCATC 1 cut(s) 52
BmuI ACTGGG 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 103
Bsa29I ATCGAT 1 cut(s) 762
BsaJI CCNNGG 2 cut(s) 979, 1005
BsaWI WCCGGW 1 cut(s) 662
Bsc4I CCNNNNNNNGG 3 cut(s) 256, 851, 911
Bse118I RCCGGY 2 cut(s) 56, 1036
Bse1I ACTGG 1 cut(s) 33
Bse3DI GCAATG 2 cut(s) 66, 447
BseBI CCWGG 5 cut(s) 465, 912, 980, 1007, 1088
BseCI ATCGAT 1 cut(s) 762
BseDI CCNNGG 2 cut(s) 979, 1005
BseGI GGATG 3 cut(s) 330, 712, 856
BseLI CCNNNNNNNGG 3 cut(s) 256, 851, 911
BseMI GCAATG 2 cut(s) 66, 447
BseMII CTCAG 3 cut(s) 540, 549, 693
BseNI ACTGG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 64
BseSI GKGCMC 1 cut(s) 222
BseX3I CGGCCG 1 cut(s) 1038
BseXI GCAGC 4 cut(s) 55, 166, 903, 1027
Bsh1285I CGRYCG 1 cut(s) 1041
BshFI GGCC 3 cut(s) 213, 915, 1040
BshVI ATCGAT 1 cut(s) 762
BsiEI CGRYCG 1 cut(s) 1041
BsiHKAI GWGCWC 3 cut(s) 222, 510, 881
BsiHKCI CYCGRG 1 cut(s) 1068
BsiSI CCGG 4 cut(s) 57, 210, 663, 1037
BslI CCNNNNNNNGG 3 cut(s) 256, 851, 911
BsmAI GTCTC 4 cut(s) 43, 153, 682, 708
BsnI GGCC 3 cut(s) 213, 915, 1040
BsoBI CYCGRG 1 cut(s) 1068
Bsp1286I GDGCHC 4 cut(s) 222, 407, 510, 881
Bsp143I GATC 3 cut(s) 164, 811, 1114
BspACI CCGC 1 cut(s) 345
BspANI GGCC 3 cut(s) 213, 915, 1040
BspCNI CTCAG 3 cut(s) 539, 550, 692
BspDI ATCGAT 1 cut(s) 762
BspMAI CTGCAG 1 cut(s) 1017
BspMI ACCTGC 2 cut(s) 1020, 1072
BspPI GGATC 1 cut(s) 806
BspQI GCTCTTC 2 cut(s) 498, 927
BsrDI GCAATG 2 cut(s) 66, 447
BsrFI RCCGGY 2 cut(s) 56, 1036
BsrI ACTGG 1 cut(s) 33
BssAI RCCGGY 2 cut(s) 56, 1036
BssECI CCNNGG 2 cut(s) 979, 1005
BssMI GATC 3 cut(s) 164, 811, 1114
Bst2UI CCWGG 5 cut(s) 465, 912, 980, 1007, 1088
Bst4CI ACNGT 4 cut(s) 14, 305, 399, 801
Bst6I CTCTTC 4 cut(s) 498, 912, 927, 1065
BstC8I GCNNGC 1 cut(s) 184
BstDEI CTNAG 4 cut(s) 78, 526, 558, 679
BstENI CCTNNNNNAGG 2 cut(s) 254, 909
BstF5I GGATG 3 cut(s) 330, 712, 856
BstKTI GATC 3 cut(s) 167, 814, 1117
BstMAI GTCTC 4 cut(s) 43, 153, 682, 708
BstMBI GATC 3 cut(s) 164, 811, 1114
BstMCI CGRYCG 1 cut(s) 1041
BstMWI GCNNNNNNNGC 2 cut(s) 23, 1021
BstNI CCWGG 5 cut(s) 465, 912, 980, 1007, 1088
BstNSI RCATGY 1 cut(s) 677
BstSCI CCNGG 5 cut(s) 463, 910, 978, 1005, 1086
BstSFI CTRYAG 5 cut(s) 237, 603, 858, 1013, 1139
BstSLI GKGCMC 1 cut(s) 222
BstV1I GCAGC 4 cut(s) 55, 166, 903, 1027
BstV2I GAAGAC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 811
BstYI RGATCY 1 cut(s) 811
BstZI CGGCCG 1 cut(s) 1038
Bsu15I ATCGAT 1 cut(s) 762
BsuI GTATCC 1 cut(s) 202
BsuRI GGCC 3 cut(s) 213, 915, 1040
BsuTUI ATCGAT 1 cut(s) 762
BtgZI GCGATG 1 cut(s) 75
BtrI CACGTC 1 cut(s) 228
BtsCI GGATG 3 cut(s) 330, 712, 856
BtsIMutI CAGTG 4 cut(s) 19, 26, 310, 879
BveI ACCTGC 2 cut(s) 1020, 1072
Cac8I GCNNGC 1 cut(s) 184
CaiI CAGNNNCTG 1 cut(s) 1012
Cfr10I RCCGGY 2 cut(s) 56, 1036
Cfr13I GGNCC 4 cut(s) 247, 863, 1009, 1084
ClaI ATCGAT 1 cut(s) 762
CseI GACGC 1 cut(s) 97
CsiI ACCWGGT 1 cut(s) 463
Csp6I GTAC 3 cut(s) 671, 710, 941
CviAII CATG 2 cut(s) 674, 690
CviQI GTAC 3 cut(s) 671, 710, 941
DdeI CTNAG 4 cut(s) 78, 526, 558, 679
DpnI GATC 3 cut(s) 166, 813, 1116
DpnII GATC 3 cut(s) 164, 811, 1114
DraI TTTAAA 1 cut(s) 723
EaeI YGGCCR 1 cut(s) 1038
EagI CGGCCG 1 cut(s) 1038
Eam1104I CTCTTC 4 cut(s) 498, 912, 927, 1065
EarI CTCTTC 4 cut(s) 498, 912, 927, 1065
EciI GGCGGA 1 cut(s) 360
EclXI CGGCCG 1 cut(s) 1038
Eco147I AGGCCT 1 cut(s) 915
Eco24I GRGCYC 1 cut(s) 407
Eco32I GATATC 1 cut(s) 267
Eco47I GGWCC 4 cut(s) 247, 863, 1009, 1084
Eco52I CGGCCG 1 cut(s) 1038
Eco88I CYCGRG 1 cut(s) 1068
EcoNI CCTNNNNNAGG 2 cut(s) 254, 909
EcoO109I RGGNCCY 3 cut(s) 247, 863, 1009
EcoRII CCWGG 5 cut(s) 463, 910, 978, 1005, 1086
EcoRV GATATC 1 cut(s) 267
EcoT38I GRGCYC 1 cut(s) 407
FaeI CATG 2 cut(s) 677, 693
FalI AAGNNNNNCTT 2 cut(s) 801, 833
FatI CATG 2 cut(s) 673, 689
FbaI TGATCA 1 cut(s) 1114
FblI GTMKAC 2 cut(s) 230, 498
Fnu4HI GCNGC 4 cut(s) 44, 180, 892, 1016
FokI GGATG 3 cut(s) 337, 719, 863
FriOI GRGCYC 1 cut(s) 407
Fsp4HI GCNGC 4 cut(s) 44, 180, 892, 1016
FspBI CTAG 5 cut(s) 374, 591, 668, 821, 938
GluI GCNGC 4 cut(s) 44, 180, 892, 1016
HaeIII GGCC 3 cut(s) 213, 915, 1040
HapII CCGG 4 cut(s) 57, 210, 663, 1037
HgaI GACGC 1 cut(s) 97
Hin1II CATG 2 cut(s) 677, 693
HincII GTYRAC 1 cut(s) 1045
HindII GTYRAC 1 cut(s) 1045
HinfI GANTC 2 cut(s) 869, 969
HpaI GTTAAC 1 cut(s) 1045
HpaII CCGG 4 cut(s) 57, 210, 663, 1037
HphI GGTGA 3 cut(s) 620, 743, 1026
Hpy166II GTNNAC 8 cut(s) 220, 231, 461, 470, 499, 628, 1045, 1056
Hpy188I TCNGA 5 cut(s) 264, 529, 559, 660, 682
Hpy188III TCNNGA 7 cut(s) 254, 641, 704, 777, 821, 866, 1118
Hpy8I GTNNAC 8 cut(s) 220, 231, 461, 470, 499, 628, 1045, 1056
HpyAV CCTTC 6 cut(s) 260, 274, 326, 478, 1071, 1115
HpyCH4III ACNGT 4 cut(s) 14, 305, 399, 801
HpyCH4IV ACGT 1 cut(s) 227
HpyCH4V TGCA 6 cut(s) 156, 220, 420, 452, 620, 1015
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 1021
HpyF3I CTNAG 4 cut(s) 78, 526, 558, 679
HpySE526I ACGT 1 cut(s) 227
Hsp92II CATG 2 cut(s) 677, 693
Ksp22I TGATCA 1 cut(s) 1114
KspAI GTTAAC 1 cut(s) 1045
Kzo9I GATC 3 cut(s) 164, 811, 1114
LguI GCTCTTC 2 cut(s) 498, 927
LmnI GCTCC 1 cut(s) 1153
Lsp1109I GCAGC 4 cut(s) 55, 166, 903, 1027
LweI GCATC 1 cut(s) 52
MabI ACCWGGT 1 cut(s) 463
MaeI CTAG 5 cut(s) 374, 591, 668, 821, 938
MaeII ACGT 1 cut(s) 227
MaeIII GTNAC 1 cut(s) 299
MalI GATC 3 cut(s) 166, 813, 1116
MboI GATC 3 cut(s) 164, 811, 1114
MboII GAAGA 8 cut(s) 103, 377, 515, 821, 899, 944, 959, 1052
MflI RGATCY 1 cut(s) 811
MhlI GDGCHC 4 cut(s) 222, 407, 510, 881
MluCI AATT 6 cut(s) 88, 205, 564, 750, 780, 1030
MmeI TCCRAC 1 cut(s) 783
MroXI GAANNNNTTC 1 cut(s) 906
MseI TTAA 6 cut(s) 311, 567, 722, 756, 795, 1044
MspI CCGG 4 cut(s) 57, 210, 663, 1037
MspR9I CCNGG 5 cut(s) 465, 912, 980, 1007, 1088
MvaI CCWGG 5 cut(s) 465, 912, 980, 1007, 1088
MwoI GCNNNNNNNGC 2 cut(s) 23, 1021
NdeII GATC 3 cut(s) 164, 811, 1114
NlaIII CATG 2 cut(s) 677, 693
NmuCI GTSAC 1 cut(s) 299
NspI RCATGY 1 cut(s) 677
PaeR7I CTCGAG 1 cut(s) 1068
PceI AGGCCT 1 cut(s) 915
PciI ACATGT 1 cut(s) 673
PciSI GCTCTTC 2 cut(s) 498, 927
PdmI GAANNNNTTC 1 cut(s) 906
PfeI GAWTC 2 cut(s) 869, 969
PflMI CCANNNNNTGG 1 cut(s) 851
PfoI TCCNGGA 1 cut(s) 1086
PkrI GCNGC 4 cut(s) 45, 181, 893, 1017
PpuMI RGGWCCY 3 cut(s) 247, 863, 1009
PscI ACATGT 1 cut(s) 673
PshBI ATTAAT 3 cut(s) 311, 567, 756
Psp5II RGGWCCY 3 cut(s) 247, 863, 1009
Psp6I CCWGG 5 cut(s) 463, 910, 978, 1005, 1086
PspGI CCWGG 5 cut(s) 463, 910, 978, 1005, 1086
PspPI GGNCC 4 cut(s) 247, 863, 1009, 1084
PspPPI RGGWCCY 3 cut(s) 247, 863, 1009
PspXI VCTCGAGB 1 cut(s) 1068
PstI CTGCAG 1 cut(s) 1017
PstNI CAGNNNCTG 1 cut(s) 1012
PsuI RGATCY 1 cut(s) 811
RsaI GTAC 3 cut(s) 672, 711, 942
RsaNI GTAC 3 cut(s) 671, 710, 941
SapI GCTCTTC 2 cut(s) 498, 927
SaqAI TTAA 6 cut(s) 311, 567, 722, 756, 795, 1044
SatI GCNGC 4 cut(s) 44, 180, 892, 1016
Sau3AI GATC 3 cut(s) 164, 811, 1114
Sau96I GGNCC 4 cut(s) 247, 863, 1009, 1084
ScrFI CCNGG 5 cut(s) 465, 912, 980, 1007, 1088
SduI GDGCHC 4 cut(s) 222, 407, 510, 881
SexAI ACCWGGT 1 cut(s) 463
SfaNI GCATC 1 cut(s) 52
SfcI CTRYAG 5 cut(s) 237, 603, 858, 1013, 1139
Sfr274I CTCGAG 1 cut(s) 1068
SinI GGWCC 4 cut(s) 247, 863, 1009, 1084
SlaI CTCGAG 1 cut(s) 1068
SmlI CTYRAG 1 cut(s) 1068
SmoI CTYRAG 1 cut(s) 1068
SpeI ACTAGT 1 cut(s) 667
Sse9I AATT 6 cut(s) 88, 205, 564, 750, 780, 1030
SseBI AGGCCT 1 cut(s) 915
SsiI CCGC 1 cut(s) 345
SspMI CTAG 5 cut(s) 374, 591, 668, 821, 938
StuI AGGCCT 1 cut(s) 915
StyD4I CCNGG 5 cut(s) 463, 910, 978, 1005, 1086
TaaI ACNGT 4 cut(s) 14, 305, 399, 801
TaiI ACGT 1 cut(s) 230
TaqI TCGA 3 cut(s) 548, 762, 1069
TasI AATT 6 cut(s) 88, 205, 564, 750, 780, 1030
TatI WGTACW 1 cut(s) 670
TfiI GAWTC 2 cut(s) 869, 969
Tru1I TTAA 6 cut(s) 311, 567, 722, 756, 795, 1044
Tru9I TTAA 6 cut(s) 311, 567, 722, 756, 795, 1044
TscAI CASTG 4 cut(s) 19, 33, 310, 886
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 4 cut(s) 43, 179, 891, 1015
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 2 cut(s) 356, 678
TspRI CASTG 4 cut(s) 19, 33, 310, 886
Van91I CCANNNNNTGG 1 cut(s) 851
VneI GTGCAC 1 cut(s) 218
VpaK11BI GGWCC 4 cut(s) 247, 863, 1009, 1084
VspI ATTAAT 3 cut(s) 311, 567, 756
XagI CCTNNNNNAGG 2 cut(s) 254, 909
XapI RAATTY 1 cut(s) 1030
XbaI TCTAGA 1 cut(s) 820
XceI RCATGY 1 cut(s) 677
XcmI CCANNNNNNNNNTGG 1 cut(s) 799
XhoI CTCGAG 1 cut(s) 1068
XmiI GTMKAC 2 cut(s) 230, 498
XmnI GAANNNNTTC 1 cut(s) 906
XspI CTAG 5 cut(s) 374, 591, 668, 821, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.