Rorug04G0109000

Ribosomal protein S1-like RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005054
Physical Location & Seq
Reverse (-)
17007316 .. 17010340
3025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0109000.1

Sequence Viewer

Length: 1089 bp
ATGGCGTCAGAGGAAATCCGAAATGTTTCTGAAGGATATCCAATGAAAGGTGGAGATGGCCCCGATAGCTATGCCAAGAACTCTACTTACCAGAGAAAAGCAATGGAGTCTGTTAAAGAACTTGTTACCAAAGGAATTGCAGAAAAGCTTGACATAGACCTTTTGTTACCTTCCAACTCCTTTCACATTGCGGATCTTGGTTGCTCTGTTGGTCCTAATACATTTTCTTCAGTTGAAAACATACTTGAAGCTGTACAGATGAAGTTTCAAAGCCAAGGACTCATGAATCACCAAATCCCTGAATTTCAAGTTTTCTTCAATGATCATACCCCAAATGATTTTAACTTGCTCTTCAAATCCCTCCCTTCCAACAGGCAATACTATGCTGCGGGAGTTCCAGGTTCTTTTTACGGTCGCCTATTCCCTAGTGCTTCCATTCACTTGTTTCACTCTTCTTTTGCTCTTCAATGGCTTTCTAAAGTACCAAAAGATGTAGAGGACAAAAACAGTCCGGCTTGGAATAAAGGCCGGATTCATTACCTGGGTTCGACTGATGAAGTAGTAAGGGCTTATAAAGCTCAATATTCTGAGAATATGGGGTCTTTCCTGCATGCGAGGGCAGAAGAACTTGTGTATGGAGGACTACTGGTCCTTATCATTCCTGGCTACCCACAGGGTACCCCTCTTTCTCCTACCGTGGCGTATTTGACCTTACAAGTCATAGAAGCCTGTCTCATCGACATGGTCAGAAAGGGAGTAATTAGTGAAGAGAAACTAGATTCATTCAACATACCAATGTATTCCATCTGCCCCCAAGAACTCGAAGCAGTTGTAGAACAAAATGGATCTTTTAGCATAGAGACATTGGAAACAATACCTCATGTTTTAGCTGATGATGCTGTCTTAAATGCAAAACAACTTGCAGCTCATGGAAGAGCCGTCTTGGAGGGACTCATCAAACAGCAATTTGGAAAAGAAATCACAGATGAGCTCTTCGACTTGTATGGCAAGAAAATGGAGAAAGAACTCTCCATTTTTAAGCAAAGGAAGAGAACTAACTTTCTTGTCATGCTGCGCAAGGCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
S1

Protein Analysis

362

Amino Acids

40.51

Weight (kDa)

5.9

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 50 - 360 3.5e-106 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 573
Acc16I TGCGCA 1 cut(s) 1076
Acc65I GGTACC 1 cut(s) 677
AccB1I GGYRCC 1 cut(s) 677
AciI CCGC 2 cut(s) 191, 389
AclWI GGATC 2 cut(s) 201, 853
AcsI RAATTY 1 cut(s) 302
AcuI CTGAAG 2 cut(s) 51, 213
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 255, 483, 679
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 8 cut(s) 236, 248, 269, 308, 319, 355, 467, 787
AhdI GACNNNNNGTC 1 cut(s) 647
AjnI CCWGG 3 cut(s) 397, 540, 661
AluBI AGCT 7 cut(s) 69, 148, 251, 578, 890, 926, 991
AluI AGCT 7 cut(s) 69, 148, 251, 578, 890, 926, 991
Alw21I GWGCWC 1 cut(s) 993
Alw26I GTCTC 2 cut(s) 737, 854
AlwI GGATC 2 cut(s) 201, 853
AoxI GGCC 2 cut(s) 58, 526
ApeKI GCWGC 3 cut(s) 386, 923, 1072
ApoI RAATTY 1 cut(s) 302
Asp700I GAANNNNTTC 1 cut(s) 25
Asp718I GGTACC 1 cut(s) 677
AspLEI GCGC 1 cut(s) 1077
AspS9I GGNCC 3 cut(s) 59, 212, 649
AsuHPI GGTGA 1 cut(s) 281
AvaII GGWCC 2 cut(s) 212, 649
BanI GGYRCC 1 cut(s) 677
BanII GRGCYC 1 cut(s) 993
Bbv12I GWGCWC 1 cut(s) 993
BbvI GCAGC 3 cut(s) 373, 935, 1059
BccI CCATC 2 cut(s) 50, 812
BceAI ACGGC 1 cut(s) 923
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BciT130I CCWGG 3 cut(s) 399, 542, 663
BclI TGATCA 1 cut(s) 322
BcoDI GTCTC 2 cut(s) 737, 854
BfaI CTAG 2 cut(s) 426, 776
BisI GCNGC 3 cut(s) 387, 924, 1073
BlsI GCNGC 3 cut(s) 388, 925, 1074
Bme1390I CCNGG 3 cut(s) 399, 542, 663
Bme18I GGWCC 2 cut(s) 212, 649
BmeRI GACNNNNNGTC 1 cut(s) 647
BmgT120I GGNCC 3 cut(s) 59, 212, 649
BmiI GGNNCC 2 cut(s) 61, 679
BmrFI CCNGG 3 cut(s) 399, 542, 663
BmsI GCATC 1 cut(s) 886
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 274, 541, 696
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 651
Bse3DI GCAATG 2 cut(s) 108, 186
BseBI CCWGG 3 cut(s) 399, 542, 663
BseDI CCNNGG 3 cut(s) 274, 541, 696
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMI GCAATG 2 cut(s) 108, 186
BseMII CTCAG 1 cut(s) 579
BseNI ACTGG 1 cut(s) 651
BseXI GCAGC 3 cut(s) 373, 935, 1059
Bsh1285I CGRYCG 1 cut(s) 415
BshFI GGCC 2 cut(s) 60, 528
BshNI GGYRCC 1 cut(s) 677
BsiEI CGRYCG 1 cut(s) 415
BsiHKAI GWGCWC 1 cut(s) 993
BsiSI CCGG 2 cut(s) 512, 529
BslFI GGGAC 1 cut(s) 963
BslI CCNNNNNNNGG 1 cut(s) 47
BsmAI GTCTC 2 cut(s) 737, 854
BsmFI GGGAC 1 cut(s) 963
BsnI GGCC 2 cut(s) 60, 528
Bsp1286I GDGCHC 1 cut(s) 993
Bsp1407I TGTACA 1 cut(s) 253
Bsp143I GATC 3 cut(s) 193, 322, 845
BspACI CCGC 2 cut(s) 191, 389
BspANI GGCC 2 cut(s) 60, 528
BspCNI CTCAG 1 cut(s) 580
BspHI TCATGA 1 cut(s) 282
BspLI GGNNCC 2 cut(s) 61, 679
BspPI GGATC 2 cut(s) 201, 853
BspQI GCTCTTC 4 cut(s) 356, 468, 928, 998
BspT107I GGYRCC 1 cut(s) 677
BsrDI GCAATG 2 cut(s) 108, 186
BsrGI TGTACA 1 cut(s) 253
BsrI ACTGG 1 cut(s) 651
BssECI CCNNGG 3 cut(s) 274, 541, 696
BssMI GATC 3 cut(s) 193, 322, 845
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 3 cut(s) 399, 542, 663
Bst4CI ACNGT 3 cut(s) 413, 509, 697
Bst6I CTCTTC 7 cut(s) 356, 457, 468, 762, 928, 998, 1043
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 612
BstDEI CTNAG 1 cut(s) 588
BstDSI CCRYGG 1 cut(s) 696
BstHHI GCGC 1 cut(s) 1077
BstKTI GATC 3 cut(s) 196, 325, 848
BstMAI GTCTC 2 cut(s) 737, 854
BstMBI GATC 3 cut(s) 193, 322, 845
BstMCI CGRYCG 1 cut(s) 415
BstMWI GCNNNNNNNGC 3 cut(s) 66, 575, 896
BstNI CCWGG 3 cut(s) 399, 542, 663
BstNSI RCATGY 1 cut(s) 614
BstSCI CCNGG 3 cut(s) 397, 540, 661
BstV1I GCAGC 3 cut(s) 373, 935, 1059
BstX2I RGATCY 2 cut(s) 193, 845
BstYI RGATCY 2 cut(s) 193, 845
BsuRI GGCC 2 cut(s) 60, 528
BtgI CCRYGG 1 cut(s) 696
Cac8I GCNNGC 1 cut(s) 612
CciI TCATGA 1 cut(s) 282
CfoI GCGC 1 cut(s) 1077
Cfr13I GGNCC 3 cut(s) 59, 212, 649
Csp6I GTAC 3 cut(s) 254, 482, 678
CviAII CATG 6 cut(s) 283, 611, 742, 881, 929, 1069
CviQI GTAC 3 cut(s) 254, 482, 678
DdeI CTNAG 1 cut(s) 588
DpnI GATC 3 cut(s) 195, 324, 847
DpnII GATC 3 cut(s) 193, 322, 845
DriI GACNNNNNGTC 1 cut(s) 647
Eam1104I CTCTTC 7 cut(s) 356, 457, 468, 762, 928, 998, 1043
Eam1105I GACNNNNNGTC 1 cut(s) 647
EarI CTCTTC 7 cut(s) 356, 457, 468, 762, 928, 998, 1043
Ecl136II GAGCTC 1 cut(s) 991
Eco130I CCWWGG 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 993
Eco32I GATATC 1 cut(s) 38
Eco47I GGWCC 2 cut(s) 212, 649
Eco53kI GAGCTC 1 cut(s) 991
Eco57I CTGAAG 2 cut(s) 51, 213
EcoICRI GAGCTC 1 cut(s) 991
EcoRII CCWGG 3 cut(s) 397, 540, 661
EcoRV GATATC 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 993
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 6 cut(s) 286, 614, 745, 884, 932, 1072
FaqI GGGAC 1 cut(s) 963
FatI CATG 6 cut(s) 282, 610, 741, 880, 928, 1068
FauI CCCGC 1 cut(s) 382
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 3 cut(s) 387, 924, 1073
FriOI GRGCYC 1 cut(s) 993
Fsp4HI GCNGC 3 cut(s) 387, 924, 1073
FspBI CTAG 2 cut(s) 426, 776
FspI TGCGCA 1 cut(s) 1076
GlaI GCGC 1 cut(s) 1076
GluI GCNGC 3 cut(s) 387, 924, 1073
HaeIII GGCC 2 cut(s) 60, 528
HapII CCGG 2 cut(s) 512, 529
HhaI GCGC 1 cut(s) 1077
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 286, 614, 745, 884, 932, 1072
Hin6I GCGC 1 cut(s) 1075
HinP1I GCGC 1 cut(s) 1075
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 6 cut(s) 107, 279, 286, 532, 779, 951
HpaII CCGG 2 cut(s) 512, 529
HphI GGTGA 1 cut(s) 281
Hpy188I TCNGA 5 cut(s) 10, 20, 31, 589, 749
Hpy188III TCNNGA 1 cut(s) 283
HpyAV CCTTC 3 cut(s) 26, 180, 375
HpyCH4III ACNGT 3 cut(s) 413, 509, 697
HpyCH4V TGCA 4 cut(s) 140, 610, 911, 923
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 575, 896
HpyF3I CTNAG 1 cut(s) 588
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 286, 614, 745, 884, 932, 1072
HspAI GCGC 1 cut(s) 1075
KpnI GGTACC 1 cut(s) 681
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 3 cut(s) 193, 322, 845
LguI GCTCTTC 4 cut(s) 356, 468, 928, 998
Lsp1109I GCAGC 3 cut(s) 373, 935, 1059
LweI GCATC 1 cut(s) 886
MaeI CTAG 2 cut(s) 426, 776
MaeIII GTNAC 2 cut(s) 124, 165
MalI GATC 3 cut(s) 195, 324, 847
MboI GATC 3 cut(s) 193, 322, 845
MflI RGATCY 2 cut(s) 193, 845
MhlI GDGCHC 1 cut(s) 993
MluCI AATT 4 cut(s) 135, 302, 759, 965
MlyI GAGTC 3 cut(s) 116, 273, 945
MmeI TCCRAC 2 cut(s) 198, 393
MnlI CCTC 8 cut(s) 4, 371, 490, 609, 632, 693, 888, 940
MroXI GAANNNNTTC 1 cut(s) 25
MseI TTAA 4 cut(s) 114, 342, 905, 1038
MslI CAYNNNNRTG 2 cut(s) 740, 794
MspI CCGG 2 cut(s) 512, 529
MspR9I CCNGG 3 cut(s) 399, 542, 663
MvaI CCWGG 3 cut(s) 399, 542, 663
MwoI GCNNNNNNNGC 3 cut(s) 66, 575, 896
NdeII GATC 3 cut(s) 193, 322, 845
NlaIII CATG 6 cut(s) 286, 614, 745, 884, 932, 1072
NlaIV GGNNCC 2 cut(s) 61, 679
NsbI TGCGCA 1 cut(s) 1076
NspI RCATGY 1 cut(s) 614
PaeI GCATGC 1 cut(s) 614
PagI TCATGA 1 cut(s) 282
PciSI GCTCTTC 4 cut(s) 356, 468, 928, 998
PdmI GAANNNNTTC 1 cut(s) 25
PfeI GAWTC 3 cut(s) 286, 532, 779
PflFI GACNNNGTC 1 cut(s) 743
PkrI GCNGC 3 cut(s) 388, 925, 1074
PleI GAGTC 3 cut(s) 115, 273, 945
PpsI GAGTC 3 cut(s) 115, 273, 945
PsiI TTATAA 1 cut(s) 573
Psp124BI GAGCTC 1 cut(s) 993
Psp6I CCWGG 3 cut(s) 397, 540, 661
PspGI CCWGG 3 cut(s) 397, 540, 661
PspN4I GGNNCC 2 cut(s) 61, 679
PspPI GGNCC 3 cut(s) 59, 212, 649
PsrI GAACNNNNNNTAC 2 cut(s) 71, 103
PsuI RGATCY 2 cut(s) 193, 845
PsyI GACNNNGTC 1 cut(s) 743
RsaI GTAC 3 cut(s) 255, 483, 679
RsaNI GTAC 3 cut(s) 254, 482, 678
RseI CAYNNNNRTG 2 cut(s) 740, 794
SacI GAGCTC 1 cut(s) 993
SapI GCTCTTC 4 cut(s) 356, 468, 928, 998
SaqAI TTAA 4 cut(s) 114, 342, 905, 1038
SatI GCNGC 3 cut(s) 387, 924, 1073
Sau3AI GATC 3 cut(s) 193, 322, 845
Sau96I GGNCC 3 cut(s) 59, 212, 649
SchI GAGTC 3 cut(s) 116, 273, 945
ScrFI CCNGG 3 cut(s) 399, 542, 663
SduI GDGCHC 1 cut(s) 993
SfaNI GCATC 1 cut(s) 886
SinI GGWCC 2 cut(s) 212, 649
SmiMI CAYNNNNRTG 2 cut(s) 740, 794
SphI GCATGC 1 cut(s) 614
Sse9I AATT 4 cut(s) 135, 302, 759, 965
SsiI CCGC 2 cut(s) 191, 389
SspI AATATT 1 cut(s) 584
SspMI CTAG 2 cut(s) 426, 776
SstI GAGCTC 1 cut(s) 993
StyD4I CCNGG 3 cut(s) 397, 540, 661
StyI CCWWGG 1 cut(s) 274
TaaI ACNGT 3 cut(s) 413, 509, 697
TaqI TCGA 4 cut(s) 548, 738, 822, 996
TasI AATT 4 cut(s) 135, 302, 759, 965
TatI WGTACW 1 cut(s) 253
TfiI GAWTC 3 cut(s) 286, 532, 779
Tru1I TTAA 4 cut(s) 114, 342, 905, 1038
Tru9I TTAA 4 cut(s) 114, 342, 905, 1038
TseI GCWGC 3 cut(s) 386, 923, 1072
TspDTI ATGAA 6 cut(s) 59, 275, 299, 524, 570, 771
Tth111I GACNNNGTC 1 cut(s) 743
VpaK11BI GGWCC 2 cut(s) 212, 649
XapI RAATTY 1 cut(s) 302
XceI RCATGY 1 cut(s) 614
XmnI GAANNNNTTC 1 cut(s) 25
XspI CTAG 2 cut(s) 426, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.