Rh4BG164800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0005054
Physical Location & Seq
Reverse (-)
29732785 .. 29733675
891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG164800.1

Sequence Viewer

Length: 417 bp
ATGCCGGCTCGAAAGGGAGCGGCTCCTTACAGAGAAAAAGAGATGGAGGATCAAGAAGAAACTTCTCATGCGGGGAGTAGAAAATTAGAAGAAAATATCAGTAAAGAAAGAGAAGCGTTCTGTGTAAGTTCTGAATATCAGAAGAGACAGATAACACTCTACAAGAACTTGGAGATGAACAACAACAGTATGCGGCAGGCTCTGGTGAGAGACCACTATACTCGATATATTGAGACAGTCAAGACTGATGACGATGAGTATGCACTGAAAAAATTTATGCATGTTATTCTACCACCGGGTTCTTCTCAGCAGCAAATTGTTGAGTCTATATCTCCAATCTCTGCTGAGGTGTCAAAGATTTTGAACTTCTTTCTAAGAAAAAAGACGGAGTCCAACGATGTGAAGGTGATATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

16.12

Weight (kDa)

6.85

Isoelectric Point (pI)

58.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 20
AciI CCGC 3 cut(s) 20, 71, 193
AclWI GGATC 1 cut(s) 57
AcsI RAATTY 1 cut(s) 272
AgsI TTSAA 1 cut(s) 364
Alw26I GTCTC 3 cut(s) 139, 204, 227
AlwI GGATC 1 cut(s) 57
AlwNI CAGNNNCTG 1 cut(s) 202
ApeKI GCWGC 1 cut(s) 310
ApoI RAATTY 1 cut(s) 272
AsuC2I CCSGG 1 cut(s) 297
AsuHPI GGTGA 1 cut(s) 217
BarI GAAGNNNNNNTAC 1 cut(s) 395
BbvCI CCTCAGC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 322
BccI CCATC 1 cut(s) 37
BcgI CGANNNNNNTGC 2 cut(s) 242, 276
BcnI CCSGG 1 cut(s) 297
BcoDI GTCTC 3 cut(s) 139, 204, 227
BisI GCNGC 3 cut(s) 21, 194, 311
BlsI GCNGC 3 cut(s) 22, 195, 312
Bme1390I CCNGG 1 cut(s) 297
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 297
Bpu10I CCTNAGC 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 204
Bse118I RCCGGY 1 cut(s) 4
BseMII CTCAG 2 cut(s) 320, 336
BseXI GCAGC 1 cut(s) 322
BsiSI CCGG 2 cut(s) 5, 296
BsmAI GTCTC 3 cut(s) 139, 204, 227
Bso31I GGTCTC 1 cut(s) 204
Bsp143I GATC 1 cut(s) 49
BspACI CCGC 3 cut(s) 20, 71, 193
BspCNI CTCAG 2 cut(s) 319, 337
BspLI GGNNCC 1 cut(s) 24
BspPI GGATC 1 cut(s) 57
BspTNI GGTCTC 1 cut(s) 204
BsrBI CCGCTC 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 4
BssAI RCCGGY 1 cut(s) 4
BssMI GATC 1 cut(s) 49
Bst4CI ACNGT 2 cut(s) 188, 238
Bst6I CTCTTC 1 cut(s) 137
BstC8I GCNNGC 2 cut(s) 6, 198
BstDEI CTNAG 3 cut(s) 306, 345, 374
BstKTI GATC 1 cut(s) 52
BstMAI GTCTC 3 cut(s) 139, 204, 227
BstMBI GATC 1 cut(s) 49
BstNSI RCATGY 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 295
BstV1I GCAGC 1 cut(s) 322
BtsIMutI CAGTG 1 cut(s) 263
Cac8I GCNNGC 2 cut(s) 6, 198
CaiI CAGNNNCTG 1 cut(s) 202
Cfr10I RCCGGY 1 cut(s) 4
CviAII CATG 2 cut(s) 68, 281
CviJI RGCY 3 cut(s) 8, 23, 200
CviKI_1 RGCY 3 cut(s) 8, 23, 200
DdeI CTNAG 3 cut(s) 306, 345, 374
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
Eco31I GGTCTC 1 cut(s) 204
EcoT22I ATGCAT 1 cut(s) 282
FaeI CATG 2 cut(s) 71, 284
FaiI YATR 9 cut(s) 69, 191, 219, 228, 261, 278, 282, 329, 412
FatI CATG 2 cut(s) 67, 280
FauI CCCGC 1 cut(s) 64
Fnu4HI GCNGC 3 cut(s) 21, 194, 311
Fsp4HI GCNGC 3 cut(s) 21, 194, 311
GluI GCNGC 3 cut(s) 21, 194, 311
HapII CCGG 2 cut(s) 5, 296
Hin1II CATG 2 cut(s) 71, 284
HinfI GANTC 2 cut(s) 323, 389
HpaII CCGG 2 cut(s) 5, 296
HphI GGTGA 1 cut(s) 217
Hpy188I TCNGA 2 cut(s) 133, 141
Hpy188III TCNNGA 2 cut(s) 53, 241
HpyAV CCTTC 1 cut(s) 397
HpyCH4III ACNGT 2 cut(s) 188, 238
HpyCH4V TGCA 2 cut(s) 263, 280
HpyF3I CTNAG 3 cut(s) 306, 345, 374
Hsp92II CATG 2 cut(s) 71, 284
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 49
LmnI GCTCC 2 cut(s) 17, 28
LpnPI CCDG 4 cut(s) 18, 182, 188, 309
Lsp1109I GCAGC 1 cut(s) 322
MalI GATC 1 cut(s) 51
MbiI CCGCTC 1 cut(s) 20
MboI GATC 1 cut(s) 49
MboII GAAGA 4 cut(s) 68, 101, 154, 294
MluCI AATT 3 cut(s) 83, 272, 315
MlyI GAGTC 2 cut(s) 332, 398
MmeI TCCRAC 1 cut(s) 417
MnlI CCTC 2 cut(s) 40, 340
Mph1103I ATGCAT 1 cut(s) 282
MroNI GCCGGC 1 cut(s) 4
MspI CCGG 2 cut(s) 5, 296
MspR9I CCNGG 1 cut(s) 297
NaeI GCCGGC 1 cut(s) 6
NciI CCSGG 1 cut(s) 297
NdeII GATC 1 cut(s) 49
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 2 cut(s) 71, 284
NlaIV GGNNCC 1 cut(s) 24
NsiI ATGCAT 1 cut(s) 282
NspI RCATGY 1 cut(s) 284
PdiI GCCGGC 1 cut(s) 6
PflFI GACNNNGTC 1 cut(s) 388
PkrI GCNGC 3 cut(s) 22, 195, 312
PleI GAGTC 2 cut(s) 331, 397
PpsI GAGTC 2 cut(s) 331, 397
PspN4I GGNNCC 1 cut(s) 24
PstNI CAGNNNCTG 1 cut(s) 202
PsyI GACNNNGTC 1 cut(s) 388
SatI GCNGC 3 cut(s) 21, 194, 311
Sau3AI GATC 1 cut(s) 49
SchI GAGTC 2 cut(s) 332, 398
ScrFI CCNGG 1 cut(s) 297
SetI ASST 2 cut(s) 351, 408
Sse9I AATT 3 cut(s) 83, 272, 315
SsiI CCGC 3 cut(s) 20, 71, 193
StyD4I CCNGG 1 cut(s) 295
TaaI ACNGT 2 cut(s) 188, 238
TaqI TCGA 2 cut(s) 10, 223
TasI AATT 3 cut(s) 83, 272, 315
TauI GCSGC 2 cut(s) 23, 196
TscAI CASTG 1 cut(s) 270
TseI GCWGC 1 cut(s) 310
TspDTI ATGAA 1 cut(s) 191
TspGWI ACGGA 1 cut(s) 401
TspRI CASTG 1 cut(s) 270
Tth111I GACNNNGTC 1 cut(s) 388
XapI RAATTY 1 cut(s) 272
XceI RCATGY 1 cut(s) 284
Zsp2I ATGCAT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.