Rroxscaffold_5G00356040

Ribosomal protein S1-like RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0005054
Physical Location & Seq
Reverse (-)
35206415 .. 35213003
6589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00356040.1

Sequence Viewer

Length: 1422 bp
ATGCCTATTTACACTGCAACTCTGGCCCTTGGATCAGTCTCACGGCTCTTGTTCATCACCAGCGATGCCTCCTCCTCCTGCTCCTCCTCTAATACTTGCTCAGTCTCTTCTTTTTTGTTAAACCACTCCAACTTCCCAAAGCAATCCCACAAGTCTGTCAGCAAGAAGAGAACCTCTCTAGTTTGCACTGCGATGGCTGTGGAGATTTCCGGAGGATACAAATTTGGTGTGGTTGAGGGTTTGGAAGGGTGGGTTGAGGAAACAGCTTTGTGTCACTCATTTTGCACTGCGAGAAGAGATTTCCCAAGTGACTTTGGCTGTGGAGATTTCCGGGATGTGCACGAATTGCTCTCTGCCGGAAGTCCTATGTTGAAACCTACAATCTTCATCCCCGTTTGTTCATTGGTTGCAAGGTGCTGGGTAGTTACACCTATAGAAAAAGAAAAGAAATATGATAATGTTGGAATGAACAGGAATCTTTATGCCAAGTGGAAGTTTTCCATACCGGAAAGGTCTGCTGATTGGAAGGTAGCAAAAGCTTACAGTGATAGTGGATTCATCTTTGATGGGATGGTTGAAGGGTATAACAGTGGAGGTTTGCTGGTTCGGTTTCATTCTTTTAGTGGGTTTTCTTCCATTTCCACAATTGAGCCCGTCACACTTTTGCCAAGGGTGTGTAACCGGGGAAAGGCGTCCAGGGAGATTGCAAAAGGATTACCTGGTTCTCTTCTATCTGTTAAGGTAATCCAAGCAGATGAAGAGAACAAGAAACTGATATTCTCAGAAAAGGAAGCTGTCTGGTCCAAGTTTTCTGAGAAAATTAGTGTTGGGGATGTTTTTGAAGCTAGGGTTGGTTCTGTGGAGGATTATGGTGCTTTTGTTCATCTACTATTTCCTGATGGTCTTTATCATTTGACTGGACTAGTACATGTCTCGGAGGTTTCATGGGATCTAGTTCAGGATGTAAGAGACATTTTGTCGGAGGGCGATGCAGTAAGAGTTAAGATCATTAATATTGACCGAGAAAAGTCAAGAATCACATTATCAATTAAACAGTTGGAGGAAGATCCACTTTTAGAAACATTGGACAAAGTGATACCACAGGATGGCTCTGACGGTCCTGATTCTTTGAACCCTAACAATAGCAGTAATATAGAGCCTCTTCCAGGCCTTGAAGCCATTTTTAAAGAGCTACTACAGGAAGATGGAATAGATGATGTAGGAATCACTCGCCAAGGATTTGAGAAAAGGGTGGTTTCACAGGACCTGCAGCTTTGGCTTTCTAATTCACCAGCCATTAATCAGAAGTTTACTCTCCTTGCTCGGGCAGGAAGGCAGGTGCAGGAAATACAACTGACGACAACACTTGATCAGGAAGGTATAAAACAAGCACTCCAGCGAGTATTGGAGCGTGTCCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
S1

Protein Analysis

473

Amino Acids

52.26

Weight (kDa)

5.56

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1 PF00575 275 - 351 2e-17 S1 RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1327
Acc36I ACCTGC 2 cut(s) 1275, 1327
AccB7I CCANNNNNTGG 1 cut(s) 1106
AccIII TCCGGA 1 cut(s) 209
AclWI GGATC 3 cut(s) 40, 957, 1061
AcsI RAATTY 1 cut(s) 221
AcyI GRCGYC 1 cut(s) 692
AfaI GTAC 1 cut(s) 927
AfiI CCNNNNNNNGG 4 cut(s) 688, 1106, 1166, 1324
AflIII ACRYGT 1 cut(s) 928
AgsI TTSAA 5 cut(s) 373, 578, 842, 1132, 1175
AhdI GACNNNNNGTC 1 cut(s) 976
AhlI ACTAGT 1 cut(s) 922
AjnI CCWGG 3 cut(s) 695, 718, 1165
AjuI GAANNNNNNNTTGG 2 cut(s) 834, 866
AluBI AGCT 6 cut(s) 266, 539, 794, 845, 1192, 1273
AluI AGCT 6 cut(s) 266, 539, 794, 845, 1192, 1273
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 4 cut(s) 43, 109, 937, 963
Alw44I GTGCAC 1 cut(s) 338
AlwI GGATC 3 cut(s) 40, 957, 1061
AlwNI CAGNNNCTG 1 cut(s) 1267
Ama87I CYCGRG 1 cut(s) 1323
Aor13HI TCCGGA 1 cut(s) 209
AoxI GGCC 2 cut(s) 24, 1168
ApaLI GTGCAC 1 cut(s) 338
ApeKI GCWGC 1 cut(s) 1270
ApoI RAATTY 1 cut(s) 221
AseI ATTAAT 2 cut(s) 1011, 1299
AspS9I GGNCC 4 cut(s) 25, 801, 1118, 1264
AsuC2I CCSGG 2 cut(s) 332, 683
AsuHPI GGTGA 2 cut(s) 49, 1281
AvaI CYCGRG 1 cut(s) 1323
AvaII GGWCC 3 cut(s) 801, 1118, 1264
BaeGI GKGCMC 1 cut(s) 342
BanII GRGCYC 1 cut(s) 654
Bbv12I GWGCWC 1 cut(s) 342
BbvI GCAGC 1 cut(s) 1282
BccI CCATC 6 cut(s) 187, 560, 565, 893, 1100, 1199
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 3 cut(s) 697, 720, 1167
BciVI GTATCC 1 cut(s) 209
BclI TGATCA 1 cut(s) 1369
BcnI CCSGG 2 cut(s) 332, 683
BcoDI GTCTC 4 cut(s) 43, 109, 937, 963
BcuI ACTAGT 1 cut(s) 922
BfaI CTAG 4 cut(s) 179, 846, 923, 953
BfmI CTRYAG 3 cut(s) 432, 1196, 1268
BfuAI ACCTGC 2 cut(s) 1275, 1327
BfuI GTATCC 1 cut(s) 209
BisI GCNGC 1 cut(s) 1271
BlsI GCNGC 1 cut(s) 1272
Bme1390I CCNGG 5 cut(s) 332, 683, 697, 720, 1167
Bme18I GGWCC 3 cut(s) 801, 1118, 1264
BmeRI GACNNNNNGTC 1 cut(s) 976
BmeT110I CYCGRG 1 cut(s) 1323
BmgT120I GGNCC 4 cut(s) 25, 801, 1118, 1264
BmrFI CCNGG 5 cut(s) 332, 683, 697, 720, 1167
BmsI GCATC 2 cut(s) 55, 979
BplI GAGNNNNNCTC 2 cut(s) 160, 192
BpmI CTGGAG 1 cut(s) 1379
BpuMI CCSGG 2 cut(s) 332, 683
BsaHI GRCGYC 1 cut(s) 692
BsaJI CCNNGG 5 cut(s) 28, 668, 682, 696, 1234
BsaWI WCCGGW 2 cut(s) 209, 505
BsaXI ACNNNNNCTCC 2 cut(s) 1377, 1407
Bsc4I CCNNNNNNNGG 4 cut(s) 688, 1106, 1166, 1324
Bse1I ACTGG 1 cut(s) 922
BseAI TCCGGA 1 cut(s) 209
BseBI CCWGG 3 cut(s) 697, 720, 1167
BseDI CCNNGG 5 cut(s) 28, 668, 682, 696, 1234
BseGI GGATG 6 cut(s) 340, 387, 576, 838, 967, 1111
BseLI CCNNNNNNNGG 4 cut(s) 688, 1106, 1166, 1324
BseMII CTCAG 3 cut(s) 114, 795, 804
BseNI ACTGG 1 cut(s) 922
BseRI GAGGAG 4 cut(s) 61, 64, 73, 76
BseSI GKGCMC 1 cut(s) 342
BseXI GCAGC 1 cut(s) 1282
BseYI CCCAGC 1 cut(s) 417
BsgI GTGCAG 1 cut(s) 1361
BshFI GGCC 2 cut(s) 26, 1170
BsiHKAI GWGCWC 1 cut(s) 342
BsiHKCI CYCGRG 1 cut(s) 1323
BsiSI CCGG 5 cut(s) 210, 331, 357, 506, 682
BslFI GGGAC 1 cut(s) 1400
BslI CCNNNNNNNGG 4 cut(s) 688, 1106, 1166, 1324
BsmAI GTCTC 4 cut(s) 43, 109, 937, 963
BsmFI GGGAC 1 cut(s) 1400
BsnI GGCC 2 cut(s) 26, 1170
BsoBI CYCGRG 1 cut(s) 1323
Bsp1286I GDGCHC 2 cut(s) 342, 654
Bsp13I TCCGGA 1 cut(s) 209
Bsp143I GATC 5 cut(s) 32, 949, 1005, 1066, 1369
BspANI GGCC 2 cut(s) 26, 1170
BspCNI CTCAG 3 cut(s) 113, 794, 805
BspEI TCCGGA 1 cut(s) 209
BspMAI CTGCAG 1 cut(s) 1272
BspMI ACCTGC 2 cut(s) 1275, 1327
BspPI GGATC 3 cut(s) 40, 957, 1061
BsrI ACTGG 1 cut(s) 922
BssECI CCNNGG 5 cut(s) 28, 668, 682, 696, 1234
BssMI GATC 5 cut(s) 32, 949, 1005, 1066, 1369
BssNI GRCGYC 1 cut(s) 692
BssT1I CCWWGG 3 cut(s) 28, 668, 1234
Bst2UI CCWGG 3 cut(s) 697, 720, 1167
Bst4CI ACNGT 4 cut(s) 545, 590, 1056, 1118
Bst6I CTCTTC 6 cut(s) 112, 161, 289, 732, 753, 1167
BstACI GRCGYC 1 cut(s) 692
BstAPI GCANNNNNTGC 1 cut(s) 346
BstDEI CTNAG 3 cut(s) 100, 781, 813
BstENI CCTNNNNNAGG 1 cut(s) 1164
BstF5I GGATG 6 cut(s) 340, 387, 576, 838, 967, 1111
BstKTI GATC 5 cut(s) 35, 952, 1008, 1069, 1372
BstMAI GTCTC 4 cut(s) 43, 109, 937, 963
BstMBI GATC 5 cut(s) 32, 949, 1005, 1066, 1369
BstMWI GCNNNNNNNGC 3 cut(s) 23, 346, 1276
BstNI CCWGG 3 cut(s) 697, 720, 1167
BstNSI RCATGY 1 cut(s) 932
BstSCI CCNGG 5 cut(s) 330, 681, 695, 718, 1165
BstSFI CTRYAG 3 cut(s) 432, 1196, 1268
BstSLI GKGCMC 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 1282
BstX2I RGATCY 2 cut(s) 949, 1066
BstYI RGATCY 2 cut(s) 949, 1066
BsuI GTATCC 1 cut(s) 209
BsuRI GGCC 2 cut(s) 26, 1170
BtgZI GCGATG 3 cut(s) 78, 206, 1002
BtsCI GGATG 6 cut(s) 340, 387, 576, 838, 967, 1111
BtsI GCAGTG 3 cut(s) 12, 186, 285
BtsIMutI CAGTG 5 cut(s) 12, 186, 285, 550, 595
BveI ACCTGC 2 cut(s) 1275, 1327
CaiI CAGNNNCTG 1 cut(s) 1267
Cfr13I GGNCC 4 cut(s) 25, 801, 1118, 1264
CseI GACGC 1 cut(s) 681
CsiI ACCWGGT 1 cut(s) 718
Csp6I GTAC 1 cut(s) 926
CviAII CATG 2 cut(s) 929, 945
CviQI GTAC 1 cut(s) 926
DdeI CTNAG 3 cut(s) 100, 781, 813
DpnI GATC 5 cut(s) 34, 951, 1007, 1068, 1371
DpnII GATC 5 cut(s) 32, 949, 1005, 1066, 1369
DraI TTTAAA 1 cut(s) 1186
DriI GACNNNNNGTC 1 cut(s) 976
Eam1104I CTCTTC 6 cut(s) 112, 161, 289, 732, 753, 1167
Eam1105I GACNNNNNGTC 1 cut(s) 976
EarI CTCTTC 6 cut(s) 112, 161, 289, 732, 753, 1167
Eco130I CCWWGG 3 cut(s) 28, 668, 1234
Eco147I AGGCCT 1 cut(s) 1170
Eco24I GRGCYC 1 cut(s) 654
Eco47I GGWCC 3 cut(s) 801, 1118, 1264
Eco88I CYCGRG 1 cut(s) 1323
EcoNI CCTNNNNNAGG 1 cut(s) 1164
EcoO109I RGGNCCY 1 cut(s) 1264
EcoRII CCWGG 3 cut(s) 695, 718, 1165
EcoT14I CCWWGG 3 cut(s) 28, 668, 1234
EcoT38I GRGCYC 1 cut(s) 654
ErhI CCWWGG 3 cut(s) 28, 668, 1234
FaeI CATG 2 cut(s) 932, 948
FalI AAGNNNNNCTT 2 cut(s) 1056, 1088
FaqI GGGAC 1 cut(s) 1400
FatI CATG 2 cut(s) 928, 944
FbaI TGATCA 1 cut(s) 1369
Fnu4HI GCNGC 1 cut(s) 1271
FokI GGATG 6 cut(s) 347, 374, 583, 845, 974, 1118
FriOI GRGCYC 1 cut(s) 654
Fsp4HI GCNGC 1 cut(s) 1271
FspBI CTAG 4 cut(s) 179, 846, 923, 953
GluI GCNGC 1 cut(s) 1271
GsaI CCCAGC 1 cut(s) 421
GsuI CTGGAG 1 cut(s) 1379
HaeIII GGCC 2 cut(s) 26, 1170
HapII CCGG 5 cut(s) 210, 331, 357, 506, 682
HgaI GACGC 1 cut(s) 681
Hin1I GRCGYC 1 cut(s) 692
Hin1II CATG 2 cut(s) 932, 948
HindIII AAGCTT 1 cut(s) 537
HinfI GANTC 5 cut(s) 475, 555, 1035, 1124, 1224
HpaII CCGG 5 cut(s) 210, 331, 357, 506, 682
HphI GGTGA 2 cut(s) 49, 1281
Hpy166II GTNNAC 2 cut(s) 340, 1311
Hpy188I TCNGA 6 cut(s) 784, 814, 937, 982, 1114, 1305
Hpy188III TCNNGA 6 cut(s) 210, 896, 959, 1032, 1121, 1373
Hpy8I GTNNAC 2 cut(s) 340, 1311
HpyAV CCTTC 5 cut(s) 239, 520, 572, 1326, 1370
HpyCH4III ACNGT 4 cut(s) 545, 590, 1056, 1118
HpyCH4V TGCA 9 cut(s) 17, 186, 285, 340, 410, 707, 992, 1270, 1342
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 346, 1276
HpyF3I CTNAG 3 cut(s) 100, 781, 813
Hsp92I GRCGYC 1 cut(s) 692
Hsp92II CATG 2 cut(s) 932, 948
Kpn2I TCCGGA 1 cut(s) 209
Ksp22I TGATCA 1 cut(s) 1369
Kzo9I GATC 5 cut(s) 32, 949, 1005, 1066, 1369
LmnI GCTCC 2 cut(s) 86, 1408
Lsp1109I GCAGC 1 cut(s) 1282
LweI GCATC 2 cut(s) 55, 979
MabI ACCWGGT 1 cut(s) 718
MaeI CTAG 4 cut(s) 179, 846, 923, 953
MaeIII GTNAC 5 cut(s) 272, 308, 424, 655, 677
MalI GATC 5 cut(s) 34, 951, 1007, 1068, 1371
MboI GATC 5 cut(s) 32, 949, 1005, 1066, 1369
MfeI CAATTG 1 cut(s) 645
MflI RGATCY 2 cut(s) 949, 1066
MhlI GDGCHC 2 cut(s) 342, 654
MluCI AATT 6 cut(s) 221, 344, 645, 819, 1047, 1285
MmeI TCCRAC 4 cut(s) 153, 442, 960, 1038
MroI TCCGGA 1 cut(s) 209
MseI TTAA 7 cut(s) 119, 738, 1002, 1011, 1050, 1185, 1299
MslI CAYNNNNRTG 1 cut(s) 191
MspI CCGG 5 cut(s) 210, 331, 357, 506, 682
MspR9I CCNGG 5 cut(s) 332, 683, 697, 720, 1167
MunI CAATTG 1 cut(s) 645
MvaI CCWGG 3 cut(s) 697, 720, 1167
MwoI GCNNNNNNNGC 3 cut(s) 23, 346, 1276
NciI CCSGG 2 cut(s) 332, 683
NdeII GATC 5 cut(s) 32, 949, 1005, 1066, 1369
NlaIII CATG 2 cut(s) 932, 948
NmuCI GTSAC 3 cut(s) 272, 308, 655
NspI RCATGY 1 cut(s) 932
PaqCI CACCTGC 1 cut(s) 1327
PceI AGGCCT 1 cut(s) 1170
PciI ACATGT 1 cut(s) 928
PfeI GAWTC 5 cut(s) 475, 555, 1035, 1124, 1224
PflMI CCANNNNNTGG 1 cut(s) 1106
PfoI TCCNGGA 1 cut(s) 330
PkrI GCNGC 1 cut(s) 1272
PpuMI RGGWCCY 1 cut(s) 1264
PscI ACATGT 1 cut(s) 928
PshBI ATTAAT 2 cut(s) 1011, 1299
Psp5II RGGWCCY 1 cut(s) 1264
Psp6I CCWGG 3 cut(s) 695, 718, 1165
PspFI CCCAGC 1 cut(s) 417
PspGI CCWGG 3 cut(s) 695, 718, 1165
PspPI GGNCC 4 cut(s) 25, 801, 1118, 1264
PspPPI RGGWCCY 1 cut(s) 1264
PstI CTGCAG 1 cut(s) 1272
PstNI CAGNNNCTG 1 cut(s) 1267
PsuI RGATCY 2 cut(s) 949, 1066
RsaI GTAC 1 cut(s) 927
RsaNI GTAC 1 cut(s) 926
RseI CAYNNNNRTG 1 cut(s) 191
SaqAI TTAA 7 cut(s) 119, 738, 1002, 1011, 1050, 1185, 1299
SatI GCNGC 1 cut(s) 1271
Sau3AI GATC 5 cut(s) 32, 949, 1005, 1066, 1369
Sau96I GGNCC 4 cut(s) 25, 801, 1118, 1264
ScrFI CCNGG 5 cut(s) 332, 683, 697, 720, 1167
SduI GDGCHC 2 cut(s) 342, 654
SexAI ACCWGGT 1 cut(s) 718
SfaNI GCATC 2 cut(s) 55, 979
SfcI CTRYAG 3 cut(s) 432, 1196, 1268
SinI GGWCC 3 cut(s) 801, 1118, 1264
SmiMI CAYNNNNRTG 1 cut(s) 191
SpeI ACTAGT 1 cut(s) 922
Sse9I AATT 6 cut(s) 221, 344, 645, 819, 1047, 1285
SseBI AGGCCT 1 cut(s) 1170
SspI AATATT 1 cut(s) 1015
SspMI CTAG 4 cut(s) 179, 846, 923, 953
StuI AGGCCT 1 cut(s) 1170
StyD4I CCNGG 5 cut(s) 330, 681, 695, 718, 1165
StyI CCWWGG 3 cut(s) 28, 668, 1234
TaaI ACNGT 4 cut(s) 545, 590, 1056, 1118
TaqII GACCGA 1 cut(s) 1035
TasI AATT 6 cut(s) 221, 344, 645, 819, 1047, 1285
TatI WGTACW 1 cut(s) 925
TfiI GAWTC 5 cut(s) 475, 555, 1035, 1124, 1224
Tru1I TTAA 7 cut(s) 119, 738, 1002, 1011, 1050, 1185, 1299
Tru9I TTAA 7 cut(s) 119, 738, 1002, 1011, 1050, 1185, 1299
TscAI CASTG 5 cut(s) 19, 193, 292, 550, 595
TseFI GTSAC 3 cut(s) 272, 308, 655
TseI GCWGC 1 cut(s) 1270
Tsp45I GTSAC 3 cut(s) 272, 308, 655
TspDTI ATGAA 9 cut(s) 43, 376, 390, 482, 547, 602, 771, 872, 933
TspRI CASTG 5 cut(s) 19, 193, 292, 550, 595
Van91I CCANNNNNTGG 1 cut(s) 1106
VneI GTGCAC 1 cut(s) 338
VpaK11BI GGWCC 3 cut(s) 801, 1118, 1264
VspI ATTAAT 2 cut(s) 1011, 1299
XagI CCTNNNNNAGG 1 cut(s) 1164
XapI RAATTY 1 cut(s) 221
XceI RCATGY 1 cut(s) 932
XspI CTAG 4 cut(s) 179, 846, 923, 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.