Rw4G013880

Ribosomal protein S1-like RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0005054
Physical Location & Seq
Reverse (-)
32422831 .. 32429804
6974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G013880.1

Sequence Viewer

Length: 1140 bp
ATGCCTATATACACTGCAACTCTGGCCCTTGGATCAGTCTCACGGCTCTTGTTCATCACCAGCGATGCCTCCTCCTCCTCCTCCTCTAATACTTGCTCAGTCTCTTCTTGTTTCTTAAACCACTCCAACTTCCCAAAGCAATCCCACAAGTCTGTAAGCAAGAAGAGAACCTCTCTAGTTTGCGCTGCCAGCAAGACTGAAGTGCAAGACTCCTCTCCCTCTACTGAGCAGGCTCGGAGGTCTGCTGATTGGAAGGTAGCAAAAGCTTACAGTGATAGTGGATTCATCTTTGATGGGATGGTTGAAGGGTATAACAGTGGAGGTTTGCTGGTTCGGTTTCATTCTTTAGTGGGTTTTCTTCCATTTCCACAATTGAGCCCATCACACTTTTGCCAAGAACCGGGGAAAGGCGTCCAGGAGATTGCAAAAGGATTACTTGGTTCTCTTATATCTGTTAAGGTAATCCAAGCAGATGAAGAGAACAAGAAACTGATATTCTCAGAAAAGGAAGCTGTATGGTCCAAGTTTTCTGAGAAAATTAGTGTTGGGGATGTTTTCGAAGCTAGGGTTGGTTCTGTGGAGGATTATGGTGCTTTTGTTCATCTACTATTTCCTGATGGTCTTTATCATTTGACTGGGCTAGTACATGTCTCGGAGGTTTCATGGGATCTAGTTCAGGATGTAAGAGACATTTTGTCGGAGGGCGATGCAGTAAGAGTTAAGATCATTAATATTGATCGAGAAAAGTCAAGAATCACATTATCAATTAAACAGTTGGAGGAAGATCCACTTTTAGAAACATTGGACAAAGTGATACCCCAGGATGGCTCTGACGGTCCTGATTCTTTGAACCCTAACAATAGCAATAATATAGAACCTCTTCCAGGCCTTGAAGCCATATTCGAAGAGCTACTACAGGAACAGGGAATAGATGATGTAGGAATCACTCGCCAAGGATTTGAGAAAAGGGTGGTTTCACAGGATCTGCAGCTTTGGCTTTCTAATTCACCAGCCATTAACCAGAAGTTTACTCTCCTTGCTCGGGCAGGAAGGCAGGTACAGGAAATACAACTGACGACAACACTTGATCAGGAAGGTATAAAACAAGCACTCCAGCGAGTATTGGAGCGTGTCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
S1

Protein Analysis

379

Amino Acids

41.69

Weight (kDa)

5.17

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1 PF00575 181 - 257 1.4e-17 S1 RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1045
AclWI GGATC 4 cut(s) 40, 675, 779, 990
AcuI CTGAAG 1 cut(s) 219
AcyI GRCGYC 1 cut(s) 411
AfaI GTAC 2 cut(s) 645, 1059
AfiI CCNNNNNNNGG 5 cut(s) 400, 407, 824, 884, 1042
AflIII ACRYGT 1 cut(s) 646
AgsI TTSAA 3 cut(s) 305, 850, 893
AhdI GACNNNNNGTC 1 cut(s) 694
AjnI CCWGG 3 cut(s) 414, 819, 883
AjuI GAANNNNNNNTTGG 2 cut(s) 552, 584
AluBI AGCT 5 cut(s) 266, 512, 563, 910, 991
AluI AGCT 5 cut(s) 266, 512, 563, 910, 991
Alw26I GTCTC 4 cut(s) 43, 106, 655, 681
AlwI GGATC 4 cut(s) 40, 675, 779, 990
AlwNI CAGNNNCTG 1 cut(s) 985
Ama87I CYCGRG 1 cut(s) 1041
AoxI GGCC 2 cut(s) 24, 886
ApeKI GCWGC 2 cut(s) 185, 988
AseI ATTAAT 1 cut(s) 729
Asp700I GAANNNNTTC 1 cut(s) 879
AspLEI GCGC 1 cut(s) 185
AspS9I GGNCC 3 cut(s) 25, 519, 836
AsuC2I CCSGG 1 cut(s) 402
AsuHPI GGTGA 2 cut(s) 49, 999
AsuII TTCGAA 2 cut(s) 558, 903
AvaI CYCGRG 1 cut(s) 1041
AvaII GGWCC 2 cut(s) 519, 836
BanII GRGCYC 1 cut(s) 380
BarI GAAGNNNNNNTAC 2 cut(s) 897, 929
BbvI GCAGC 2 cut(s) 172, 1000
BccI CCATC 5 cut(s) 287, 292, 388, 611, 818
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 3 cut(s) 416, 821, 885
BclI TGATCA 1 cut(s) 1087
BcnI CCSGG 1 cut(s) 402
BcoDI GTCTC 4 cut(s) 43, 106, 655, 681
BfaI CTAG 4 cut(s) 176, 564, 641, 671
BfmI CTRYAG 2 cut(s) 914, 986
BfuAI ACCTGC 1 cut(s) 1045
BisI GCNGC 2 cut(s) 186, 989
BlsI GCNGC 2 cut(s) 187, 990
Bme1390I CCNGG 4 cut(s) 402, 416, 821, 885
Bme18I GGWCC 2 cut(s) 519, 836
BmeRI GACNNNNNGTC 1 cut(s) 694
BmeT110I CYCGRG 1 cut(s) 1041
BmgT120I GGNCC 3 cut(s) 25, 519, 836
BmrFI CCNGG 4 cut(s) 402, 416, 821, 885
BmrI ACTGGG 1 cut(s) 645
BmsI GCATC 2 cut(s) 55, 697
BmuI ACTGGG 1 cut(s) 645
BplI GAGNNNNNCTC 2 cut(s) 157, 189
BpmI CTGGAG 1 cut(s) 1097
Bpu14I TTCGAA 2 cut(s) 558, 903
BpuMI CCSGG 1 cut(s) 402
BsaHI GRCGYC 1 cut(s) 411
BsaJI CCNNGG 4 cut(s) 28, 401, 819, 952
BsaXI ACNNNNNCTCC 2 cut(s) 1095, 1125
Bsc4I CCNNNNNNNGG 5 cut(s) 400, 407, 824, 884, 1042
Bse1I ACTGG 1 cut(s) 640
BseBI CCWGG 3 cut(s) 416, 821, 885
BseDI CCNNGG 4 cut(s) 28, 401, 819, 952
BseGI GGATG 4 cut(s) 303, 556, 685, 829
BseLI CCNNNNNNNGG 5 cut(s) 400, 407, 824, 884, 1042
BseMII CTCAG 4 cut(s) 111, 216, 513, 522
BseNI ACTGG 1 cut(s) 640
BseRI GAGGAG 6 cut(s) 61, 64, 67, 70, 73, 202
BseXI GCAGC 2 cut(s) 172, 1000
BshFI GGCC 2 cut(s) 26, 888
BsiHKCI CYCGRG 1 cut(s) 1041
BsiSI CCGG 1 cut(s) 401
BslFI GGGAC 1 cut(s) 1118
BslI CCNNNNNNNGG 5 cut(s) 400, 407, 824, 884, 1042
BsmAI GTCTC 4 cut(s) 43, 106, 655, 681
BsmFI GGGAC 1 cut(s) 1118
BsnI GGCC 2 cut(s) 26, 888
BsoBI CYCGRG 1 cut(s) 1041
Bsp119I TTCGAA 2 cut(s) 558, 903
Bsp1286I GDGCHC 1 cut(s) 380
Bsp143I GATC 7 cut(s) 32, 667, 723, 736, 784, 982, 1087
BspANI GGCC 2 cut(s) 26, 888
BspCNI CTCAG 4 cut(s) 110, 217, 512, 523
BspMAI CTGCAG 1 cut(s) 990
BspMI ACCTGC 1 cut(s) 1045
BspPI GGATC 4 cut(s) 40, 675, 779, 990
BspQI GCTCTTC 1 cut(s) 900
BspT104I TTCGAA 2 cut(s) 558, 903
BsrI ACTGG 1 cut(s) 640
BssECI CCNNGG 4 cut(s) 28, 401, 819, 952
BssMI GATC 7 cut(s) 32, 667, 723, 736, 784, 982, 1087
BssNI GRCGYC 1 cut(s) 411
BssT1I CCWWGG 2 cut(s) 28, 952
Bst2UI CCWGG 3 cut(s) 416, 821, 885
Bst4CI ACNGT 4 cut(s) 272, 317, 774, 836
Bst6I CTCTTC 5 cut(s) 109, 158, 471, 885, 900
BstACI GRCGYC 1 cut(s) 411
BstBI TTCGAA 2 cut(s) 558, 903
BstC8I GCNNGC 2 cut(s) 190, 231
BstDEI CTNAG 4 cut(s) 97, 225, 499, 531
BstENI CCTNNNNNAGG 1 cut(s) 882
BstF5I GGATG 4 cut(s) 303, 556, 685, 829
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 7 cut(s) 35, 670, 726, 739, 787, 985, 1090
BstMAI GTCTC 4 cut(s) 43, 106, 655, 681
BstMBI GATC 7 cut(s) 32, 667, 723, 736, 784, 982, 1087
BstMWI GCNNNNNNNGC 3 cut(s) 23, 189, 994
BstNI CCWGG 3 cut(s) 416, 821, 885
BstNSI RCATGY 1 cut(s) 650
BstSCI CCNGG 4 cut(s) 400, 414, 819, 883
BstSFI CTRYAG 2 cut(s) 914, 986
BstV1I GCAGC 2 cut(s) 172, 1000
BstX2I RGATCY 3 cut(s) 667, 784, 982
BstYI RGATCY 3 cut(s) 667, 784, 982
BsuRI GGCC 2 cut(s) 26, 888
BtgZI GCGATG 2 cut(s) 78, 720
BtsCI GGATG 4 cut(s) 303, 556, 685, 829
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 12, 277, 322
BveI ACCTGC 1 cut(s) 1045
Cac8I GCNNGC 2 cut(s) 190, 231
CaiI CAGNNNCTG 1 cut(s) 985
CfoI GCGC 1 cut(s) 185
Cfr13I GGNCC 3 cut(s) 25, 519, 836
CseI GACGC 1 cut(s) 400
Csp6I GTAC 2 cut(s) 644, 1058
CviAII CATG 2 cut(s) 647, 663
CviQI GTAC 2 cut(s) 644, 1058
DdeI CTNAG 4 cut(s) 97, 225, 499, 531
DpnI GATC 7 cut(s) 34, 669, 725, 738, 786, 984, 1089
DpnII GATC 7 cut(s) 32, 667, 723, 736, 784, 982, 1087
DriI GACNNNNNGTC 1 cut(s) 694
Eam1104I CTCTTC 5 cut(s) 109, 158, 471, 885, 900
Eam1105I GACNNNNNGTC 1 cut(s) 694
EarI CTCTTC 5 cut(s) 109, 158, 471, 885, 900
Eco130I CCWWGG 2 cut(s) 28, 952
Eco147I AGGCCT 1 cut(s) 888
Eco24I GRGCYC 1 cut(s) 380
Eco47I GGWCC 2 cut(s) 519, 836
Eco57I CTGAAG 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 1041
EcoNI CCTNNNNNAGG 1 cut(s) 882
EcoRII CCWGG 3 cut(s) 414, 819, 883
EcoT14I CCWWGG 2 cut(s) 28, 952
EcoT38I GRGCYC 1 cut(s) 380
ErhI CCWWGG 2 cut(s) 28, 952
FaeI CATG 2 cut(s) 650, 666
FalI AAGNNNNNCTT 4 cut(s) 420, 452, 774, 806
FaqI GGGAC 1 cut(s) 1118
FatI CATG 2 cut(s) 646, 662
FbaI TGATCA 1 cut(s) 1087
Fnu4HI GCNGC 2 cut(s) 186, 989
FokI GGATG 4 cut(s) 310, 563, 692, 836
FriOI GRGCYC 1 cut(s) 380
Fsp4HI GCNGC 2 cut(s) 186, 989
FspBI CTAG 4 cut(s) 176, 564, 641, 671
GlaI GCGC 1 cut(s) 184
GluI GCNGC 2 cut(s) 186, 989
GsuI CTGGAG 1 cut(s) 1097
HaeIII GGCC 2 cut(s) 26, 888
HapII CCGG 1 cut(s) 401
HgaI GACGC 1 cut(s) 400
HhaI GCGC 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 411
Hin1II CATG 2 cut(s) 650, 666
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 5 cut(s) 209, 282, 753, 842, 942
HpaII CCGG 1 cut(s) 401
HphI GGTGA 2 cut(s) 49, 999
Hpy166II GTNNAC 1 cut(s) 1029
Hpy188I TCNGA 6 cut(s) 237, 502, 532, 655, 700, 832
Hpy188III TCNNGA 6 cut(s) 614, 677, 740, 750, 839, 1091
Hpy8I GTNNAC 1 cut(s) 1029
HpyAV CCTTC 4 cut(s) 247, 299, 1044, 1088
HpyCH4III ACNGT 4 cut(s) 272, 317, 774, 836
HpyCH4V TGCA 5 cut(s) 17, 205, 425, 710, 988
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 189, 994
HpyF3I CTNAG 4 cut(s) 97, 225, 499, 531
Hsp92I GRCGYC 1 cut(s) 411
Hsp92II CATG 2 cut(s) 650, 666
HspAI GCGC 1 cut(s) 183
Ksp22I TGATCA 1 cut(s) 1087
Kzo9I GATC 7 cut(s) 32, 667, 723, 736, 784, 982, 1087
LguI GCTCTTC 1 cut(s) 900
LmnI GCTCC 1 cut(s) 1126
Lsp1109I GCAGC 2 cut(s) 172, 1000
LweI GCATC 2 cut(s) 55, 697
MaeI CTAG 4 cut(s) 176, 564, 641, 671
MalI GATC 7 cut(s) 34, 669, 725, 738, 786, 984, 1089
MboI GATC 7 cut(s) 32, 667, 723, 736, 784, 982, 1087
MboII GAAGA 7 cut(s) 96, 175, 350, 488, 794, 872, 917
MfeI CAATTG 1 cut(s) 371
MflI RGATCY 3 cut(s) 667, 784, 982
MhlI GDGCHC 1 cut(s) 380
MluCI AATT 4 cut(s) 371, 537, 765, 1003
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 3 cut(s) 150, 678, 756
MroXI GAANNNNTTC 1 cut(s) 879
MseI TTAA 6 cut(s) 116, 456, 720, 729, 768, 1017
MspI CCGG 1 cut(s) 401
MspR9I CCNGG 4 cut(s) 402, 416, 821, 885
MunI CAATTG 1 cut(s) 371
MvaI CCWGG 3 cut(s) 416, 821, 885
MwoI GCNNNNNNNGC 3 cut(s) 23, 189, 994
NciI CCSGG 1 cut(s) 402
NdeII GATC 7 cut(s) 32, 667, 723, 736, 784, 982, 1087
NlaIII CATG 2 cut(s) 650, 666
NspI RCATGY 1 cut(s) 650
NspV TTCGAA 2 cut(s) 558, 903
PceI AGGCCT 1 cut(s) 888
PciI ACATGT 1 cut(s) 646
PciSI GCTCTTC 1 cut(s) 900
PdmI GAANNNNTTC 1 cut(s) 879
PfeI GAWTC 4 cut(s) 282, 753, 842, 942
PfoI TCCNGGA 1 cut(s) 414
PkrI GCNGC 2 cut(s) 187, 990
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
PscI ACATGT 1 cut(s) 646
PshBI ATTAAT 1 cut(s) 729
Psp6I CCWGG 3 cut(s) 414, 819, 883
PspGI CCWGG 3 cut(s) 414, 819, 883
PspPI GGNCC 3 cut(s) 25, 519, 836
PstI CTGCAG 1 cut(s) 990
PstNI CAGNNNCTG 1 cut(s) 985
PsuI RGATCY 3 cut(s) 667, 784, 982
RsaI GTAC 2 cut(s) 645, 1059
RsaNI GTAC 2 cut(s) 644, 1058
SapI GCTCTTC 1 cut(s) 900
SaqAI TTAA 6 cut(s) 116, 456, 720, 729, 768, 1017
SatI GCNGC 2 cut(s) 186, 989
Sau3AI GATC 7 cut(s) 32, 667, 723, 736, 784, 982, 1087
Sau96I GGNCC 3 cut(s) 25, 519, 836
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 4 cut(s) 402, 416, 821, 885
SduI GDGCHC 1 cut(s) 380
SfaNI GCATC 2 cut(s) 55, 697
SfcI CTRYAG 2 cut(s) 914, 986
SfuI TTCGAA 2 cut(s) 558, 903
SinI GGWCC 2 cut(s) 519, 836
Sse9I AATT 4 cut(s) 371, 537, 765, 1003
SseBI AGGCCT 1 cut(s) 888
SspI AATATT 1 cut(s) 733
SspMI CTAG 4 cut(s) 176, 564, 641, 671
StuI AGGCCT 1 cut(s) 888
StyD4I CCNGG 4 cut(s) 400, 414, 819, 883
StyI CCWWGG 2 cut(s) 28, 952
TaaI ACNGT 4 cut(s) 272, 317, 774, 836
TaqI TCGA 3 cut(s) 558, 739, 903
TasI AATT 4 cut(s) 371, 537, 765, 1003
TatI WGTACW 1 cut(s) 643
TfiI GAWTC 4 cut(s) 282, 753, 842, 942
Tru1I TTAA 6 cut(s) 116, 456, 720, 729, 768, 1017
Tru9I TTAA 6 cut(s) 116, 456, 720, 729, 768, 1017
TscAI CASTG 3 cut(s) 19, 277, 322
TseI GCWGC 2 cut(s) 185, 988
TspDTI ATGAA 6 cut(s) 43, 274, 329, 489, 590, 651
TspRI CASTG 3 cut(s) 19, 277, 322
VpaK11BI GGWCC 2 cut(s) 519, 836
VspI ATTAAT 1 cut(s) 729
XagI CCTNNNNNAGG 1 cut(s) 882
XceI RCATGY 1 cut(s) 650
XmnI GAANNNNTTC 1 cut(s) 879
XspI CTAG 4 cut(s) 176, 564, 641, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.