Rh4AG168000

Ribosomal protein S1-like RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0005054
Physical Location & Seq
Reverse (-)
42320603 .. 42327576
6974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG168000.1

Sequence Viewer

Length: 837 bp
ATGGTTGAAGGGTATAACAGTGGAGGTTTGCTGGTTCGGTTTCATTCTTTAGTGGGTTTTCTTCCATTTCCACAATTGAGCCCATCACACTTCTGCCAAGAACCGGGGAAAGGCGTCCAGGAGATTGCAAAAGGATTACTTGGTTCTCTTATATCTGTTAAGGTAATCCAAGCAGATGAAGAGAACAAGAAACTGATATTCTCAGAAAAGGAAGCTGTCTGGTCCAAGTTTTCTGAGAAAATTAGTGTTGGGGATGTTTTTGAAGCTAGGGTTGGTTCTGTGGAGGATTACGGTGCTTTTGTTCATCTACTATTTCCTGATGGTCTTTATCATTTGACTGGACTAGTACATGTCTCGGAGGTTTCATGGGATCTAGTTCAGGATGTAAGAGACATTTTGTCGGAGGGCGATGCAGTAAGAGTTAAGATCATTAATATTGATCGAGAAAAGTCAAGAATCACATTATCAATTAAACAGTTGGAGGAAGATCCACTTTTAGAAACATTGGACAAAGTGATACCCCAGGATGGCTCTGACGGTCCTGATTCTTTGAACCCTAACAATAGCAATAATATAGAACCTCTTCCAGGCCTTGAAGCCATATTCGAAGAGCTACTACAGGAAGATGGAATAGATGATGTAGGAATCACTCGCCAAGGATTTGAGAAAAGGGTGGTTTCACAGGACCTGCAGCTTTGGCTTTCTAATTCACCAGCCATTAACCAGAAGTTTACTCTCCTTGCTCGGGCAGGAAGGCAGGAAATACAACTGACGACAACACTTGATCAGGAAGGTATAAAACAAGCACTCCAGCGAGTGTTGGAGCGTGTCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
S1

Protein Analysis

278

Amino Acids

30.9

Weight (kDa)

4.71

Isoelectric Point (pI)

45.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1 PF00575 82 - 158 7.9e-18 S1 RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 696
AclWI GGATC 2 cut(s) 378, 482
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 1 cut(s) 348
AfiI CCNNNNNNNGG 5 cut(s) 103, 110, 527, 587, 745
AflIII ACRYGT 1 cut(s) 349
AgsI TTSAA 4 cut(s) 8, 263, 553, 596
AhdI GACNNNNNGTC 1 cut(s) 397
AhlI ACTAGT 1 cut(s) 343
AjnI CCWGG 3 cut(s) 117, 522, 586
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AluBI AGCT 4 cut(s) 215, 266, 613, 694
AluI AGCT 4 cut(s) 215, 266, 613, 694
Alw26I GTCTC 2 cut(s) 358, 384
AlwI GGATC 2 cut(s) 378, 482
AlwNI CAGNNNCTG 1 cut(s) 688
Ama87I CYCGRG 1 cut(s) 744
AoxI GGCC 1 cut(s) 589
ApeKI GCWGC 1 cut(s) 691
AseI ATTAAT 1 cut(s) 432
Asp700I GAANNNNTTC 1 cut(s) 582
AspS9I GGNCC 3 cut(s) 222, 539, 685
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 702
AsuII TTCGAA 1 cut(s) 606
AvaI CYCGRG 1 cut(s) 744
AvaII GGWCC 3 cut(s) 222, 539, 685
BanII GRGCYC 1 cut(s) 83
BarI GAAGNNNNNNTAC 2 cut(s) 600, 632
BbvI GCAGC 1 cut(s) 703
BccI CCATC 4 cut(s) 91, 314, 521, 620
BciT130I CCWGG 3 cut(s) 119, 524, 588
BclI TGATCA 1 cut(s) 784
BcnI CCSGG 1 cut(s) 105
BcoDI GTCTC 2 cut(s) 358, 384
BcuI ACTAGT 1 cut(s) 343
BfaI CTAG 3 cut(s) 267, 344, 374
BfmI CTRYAG 2 cut(s) 617, 689
BfuAI ACCTGC 1 cut(s) 696
BisI GCNGC 1 cut(s) 692
BlsI GCNGC 1 cut(s) 693
Bme1390I CCNGG 4 cut(s) 105, 119, 524, 588
Bme18I GGWCC 3 cut(s) 222, 539, 685
BmeRI GACNNNNNGTC 1 cut(s) 397
BmeT110I CYCGRG 1 cut(s) 744
BmgT120I GGNCC 3 cut(s) 222, 539, 685
BmrFI CCNGG 4 cut(s) 105, 119, 524, 588
BmsI GCATC 1 cut(s) 400
BpmI CTGGAG 1 cut(s) 794
Bpu14I TTCGAA 1 cut(s) 606
BpuMI CCSGG 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 3 cut(s) 104, 522, 655
BsaXI ACNNNNNCTCC 2 cut(s) 792, 822
Bsc4I CCNNNNNNNGG 5 cut(s) 103, 110, 527, 587, 745
Bse1I ACTGG 1 cut(s) 343
BseBI CCWGG 3 cut(s) 119, 524, 588
BseDI CCNNGG 3 cut(s) 104, 522, 655
BseGI GGATG 3 cut(s) 259, 388, 532
BseLI CCNNNNNNNGG 5 cut(s) 103, 110, 527, 587, 745
BseMII CTCAG 2 cut(s) 216, 225
BseNI ACTGG 1 cut(s) 343
BseXI GCAGC 1 cut(s) 703
BshFI GGCC 1 cut(s) 591
BsiHKCI CYCGRG 1 cut(s) 744
BsiSI CCGG 1 cut(s) 104
BslFI GGGAC 1 cut(s) 815
BslI CCNNNNNNNGG 5 cut(s) 103, 110, 527, 587, 745
BsmAI GTCTC 2 cut(s) 358, 384
BsmFI GGGAC 1 cut(s) 815
BsnI GGCC 1 cut(s) 591
BsoBI CYCGRG 1 cut(s) 744
Bsp119I TTCGAA 1 cut(s) 606
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 5 cut(s) 370, 426, 439, 487, 784
BspANI GGCC 1 cut(s) 591
BspCNI CTCAG 2 cut(s) 215, 226
BspMAI CTGCAG 1 cut(s) 693
BspMI ACCTGC 1 cut(s) 696
BspPI GGATC 2 cut(s) 378, 482
BspQI GCTCTTC 1 cut(s) 603
BspT104I TTCGAA 1 cut(s) 606
BsrI ACTGG 1 cut(s) 343
BssECI CCNNGG 3 cut(s) 104, 522, 655
BssMI GATC 5 cut(s) 370, 426, 439, 487, 784
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 655
Bst2UI CCWGG 3 cut(s) 119, 524, 588
Bst4CI ACNGT 4 cut(s) 20, 293, 477, 539
Bst6I CTCTTC 3 cut(s) 174, 588, 603
BstACI GRCGYC 1 cut(s) 114
BstBI TTCGAA 1 cut(s) 606
BstDEI CTNAG 2 cut(s) 202, 234
BstENI CCTNNNNNAGG 1 cut(s) 585
BstF5I GGATG 3 cut(s) 259, 388, 532
BstKTI GATC 5 cut(s) 373, 429, 442, 490, 787
BstMAI GTCTC 2 cut(s) 358, 384
BstMBI GATC 5 cut(s) 370, 426, 439, 487, 784
BstMWI GCNNNNNNNGC 1 cut(s) 697
BstNI CCWGG 3 cut(s) 119, 524, 588
BstNSI RCATGY 1 cut(s) 353
BstSCI CCNGG 4 cut(s) 103, 117, 522, 586
BstSFI CTRYAG 2 cut(s) 617, 689
BstV1I GCAGC 1 cut(s) 703
BstX2I RGATCY 2 cut(s) 370, 487
BstYI RGATCY 2 cut(s) 370, 487
BsuRI GGCC 1 cut(s) 591
BtgZI GCGATG 1 cut(s) 423
BtsCI GGATG 3 cut(s) 259, 388, 532
BtsIMutI CAGTG 1 cut(s) 25
BveI ACCTGC 1 cut(s) 696
CaiI CAGNNNCTG 1 cut(s) 688
Cfr13I GGNCC 3 cut(s) 222, 539, 685
CseI GACGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 347
CviAII CATG 2 cut(s) 350, 366
CviQI GTAC 1 cut(s) 347
DdeI CTNAG 2 cut(s) 202, 234
DpnI GATC 5 cut(s) 372, 428, 441, 489, 786
DpnII GATC 5 cut(s) 370, 426, 439, 487, 784
DriI GACNNNNNGTC 1 cut(s) 397
Eam1104I CTCTTC 3 cut(s) 174, 588, 603
Eam1105I GACNNNNNGTC 1 cut(s) 397
EarI CTCTTC 3 cut(s) 174, 588, 603
Eco130I CCWWGG 1 cut(s) 655
Eco147I AGGCCT 1 cut(s) 591
Eco24I GRGCYC 1 cut(s) 83
Eco47I GGWCC 3 cut(s) 222, 539, 685
Eco88I CYCGRG 1 cut(s) 744
EcoNI CCTNNNNNAGG 1 cut(s) 585
EcoO109I RGGNCCY 1 cut(s) 685
EcoRII CCWGG 3 cut(s) 117, 522, 586
EcoT14I CCWWGG 1 cut(s) 655
EcoT38I GRGCYC 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 655
FaeI CATG 2 cut(s) 353, 369
FaiI YATR 8 cut(s) 15, 152, 351, 367, 575, 602, 797, 835
FalI AAGNNNNNCTT 4 cut(s) 123, 155, 477, 509
FaqI GGGAC 1 cut(s) 815
FatI CATG 2 cut(s) 349, 365
FbaI TGATCA 1 cut(s) 784
Fnu4HI GCNGC 1 cut(s) 692
FokI GGATG 3 cut(s) 266, 395, 539
FriOI GRGCYC 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 692
FspBI CTAG 3 cut(s) 267, 344, 374
GluI GCNGC 1 cut(s) 692
GsuI CTGGAG 1 cut(s) 794
HaeIII GGCC 1 cut(s) 591
HapII CCGG 1 cut(s) 104
HgaI GACGC 1 cut(s) 103
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 2 cut(s) 353, 369
HinfI GANTC 3 cut(s) 456, 545, 645
HpaII CCGG 1 cut(s) 104
HphI GGTGA 1 cut(s) 702
Hpy166II GTNNAC 1 cut(s) 732
Hpy188I TCNGA 5 cut(s) 205, 235, 358, 403, 535
Hpy188III TCNNGA 6 cut(s) 317, 380, 443, 453, 542, 788
Hpy8I GTNNAC 1 cut(s) 732
HpyAV CCTTC 2 cut(s) 747, 785
HpyCH4III ACNGT 4 cut(s) 20, 293, 477, 539
HpyCH4V TGCA 3 cut(s) 128, 413, 691
HpyF10VI GCNNNNNNNGC 1 cut(s) 697
HpyF3I CTNAG 2 cut(s) 202, 234
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 2 cut(s) 353, 369
Ksp22I TGATCA 1 cut(s) 784
Kzo9I GATC 5 cut(s) 370, 426, 439, 487, 784
LguI GCTCTTC 1 cut(s) 603
LmnI GCTCC 1 cut(s) 823
Lsp1109I GCAGC 1 cut(s) 703
LweI GCATC 1 cut(s) 400
MaeI CTAG 3 cut(s) 267, 344, 374
MalI GATC 5 cut(s) 372, 428, 441, 489, 786
MboI GATC 5 cut(s) 370, 426, 439, 487, 784
MboII GAAGA 6 cut(s) 53, 191, 497, 575, 620, 635
MfeI CAATTG 1 cut(s) 74
MflI RGATCY 2 cut(s) 370, 487
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 4 cut(s) 74, 240, 468, 706
MmeI TCCRAC 3 cut(s) 381, 459, 801
MnlI CCTC 6 cut(s) 17, 277, 352, 397, 475, 591
MroXI GAANNNNTTC 1 cut(s) 582
MseI TTAA 5 cut(s) 159, 423, 432, 471, 720
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 4 cut(s) 105, 119, 524, 588
MunI CAATTG 1 cut(s) 74
MvaI CCWGG 3 cut(s) 119, 524, 588
MwoI GCNNNNNNNGC 1 cut(s) 697
NciI CCSGG 1 cut(s) 105
NdeII GATC 5 cut(s) 370, 426, 439, 487, 784
NlaIII CATG 2 cut(s) 353, 369
NspI RCATGY 1 cut(s) 353
NspV TTCGAA 1 cut(s) 606
PceI AGGCCT 1 cut(s) 591
PciI ACATGT 1 cut(s) 349
PciSI GCTCTTC 1 cut(s) 603
PdmI GAANNNNTTC 1 cut(s) 582
PfeI GAWTC 3 cut(s) 456, 545, 645
PfoI TCCNGGA 1 cut(s) 117
PkrI GCNGC 1 cut(s) 693
PpuMI RGGWCCY 1 cut(s) 685
PscI ACATGT 1 cut(s) 349
PshBI ATTAAT 1 cut(s) 432
Psp5II RGGWCCY 1 cut(s) 685
Psp6I CCWGG 3 cut(s) 117, 522, 586
PspGI CCWGG 3 cut(s) 117, 522, 586
PspPI GGNCC 3 cut(s) 222, 539, 685
PspPPI RGGWCCY 1 cut(s) 685
PstI CTGCAG 1 cut(s) 693
PstNI CAGNNNCTG 1 cut(s) 688
PsuI RGATCY 2 cut(s) 370, 487
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
SapI GCTCTTC 1 cut(s) 603
SaqAI TTAA 5 cut(s) 159, 423, 432, 471, 720
SatI GCNGC 1 cut(s) 692
Sau3AI GATC 5 cut(s) 370, 426, 439, 487, 784
Sau96I GGNCC 3 cut(s) 222, 539, 685
ScrFI CCNGG 4 cut(s) 105, 119, 524, 588
SduI GDGCHC 1 cut(s) 83
SfaNI GCATC 1 cut(s) 400
SfcI CTRYAG 2 cut(s) 617, 689
SfuI TTCGAA 1 cut(s) 606
SinI GGWCC 3 cut(s) 222, 539, 685
SpeI ACTAGT 1 cut(s) 343
Sse9I AATT 4 cut(s) 74, 240, 468, 706
SseBI AGGCCT 1 cut(s) 591
SspI AATATT 1 cut(s) 436
SspMI CTAG 3 cut(s) 267, 344, 374
StuI AGGCCT 1 cut(s) 591
StyD4I CCNGG 4 cut(s) 103, 117, 522, 586
StyI CCWWGG 1 cut(s) 655
TaaI ACNGT 4 cut(s) 20, 293, 477, 539
TaqI TCGA 2 cut(s) 442, 606
TasI AATT 4 cut(s) 74, 240, 468, 706
TatI WGTACW 1 cut(s) 346
TfiI GAWTC 3 cut(s) 456, 545, 645
Tru1I TTAA 5 cut(s) 159, 423, 432, 471, 720
Tru9I TTAA 5 cut(s) 159, 423, 432, 471, 720
TscAI CASTG 1 cut(s) 25
TseI GCWGC 1 cut(s) 691
TspDTI ATGAA 4 cut(s) 32, 192, 293, 354
TspRI CASTG 1 cut(s) 25
VpaK11BI GGWCC 3 cut(s) 222, 539, 685
VspI ATTAAT 1 cut(s) 432
XagI CCTNNNNNAGG 1 cut(s) 585
XceI RCATGY 1 cut(s) 353
XmnI GAANNNNTTC 1 cut(s) 582
XspI CTAG 3 cut(s) 267, 344, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.