FvH4_4g13040

F-box protein At3g07870-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
16669704 .. 16674933
5230 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13040.t1

Sequence Viewer

Length: 1719 bp
ATGAAGAAGACAACGGAGCCACCACACGGACCCCAGCAGAAACAACACCGTTCATCATCAGAAGAAGAAACAGGGCTAGGGCACAACACTGTTCAGAAACCCTATCTTTTACAGTTGCCAGACAACACAATATTCGATATCCACTGCAGAATCCCAATCAAGACGCTGATCAAATGCAGGAGGGTATGCAATCCTTGGAGATCTTTGCTCTCAGATCCTCTGTTCACCAAAGGCCTATTCGCCAGAACACCAGCTTGCCATTTGGTCAGAGCCATGGGTAGGTACTATTTGCTCGACTTCAATGATGCTTCGACCCCAAACGGCGTCACAGCACTGCAAACAAGATTTCTTAATAGCAGCGACGGCTTCGTGGGATCATGCAATGGCTTCCTCTGTTTATACAACAAGGAGAGAAACCGTCTAGGTTTTTTCATTTCTAATCCCATCACCGGTGAGAGTCTAGCTCTTCCGAAAGCTATGAAGCCAAACGATCCTCCTCCCATTTACTGTGGGCCTTCTGCAGATGCCATCACTCATGAAAATTTGGCTTTTCTAGATTCTTTTCGTCCAAAGTCTGTTGAGGAACTTGTGTTTCAATCTTGTTCTGCATTTGGGTTTGGGTTTAGTCCAATAAGTGACGTTTATAAAGTAGTTGTCTTTACTAAATCAACGTTATTTGAAGTTAAGTCTCCTCGTGAGTTTCGGCTTAGTCGTGGACCTGAGAAGGTGACTGTTTTGACTGTTGGTTCTGGGAGCTGGAGACATATTGAGGACTCTGTTATGGGAGAATTTGACCATCAATCAGGAATTTTTCTTAATGGATATCTTCATTGGATCGGTAGAACTACACTGGTTGGGTCTCGTTTTATATATGCCTTTTGTATTGAAAGTGAGAGTTTCAAAGAGTTGCCACTACCACCTTGGACTGTTGATAGCAACAAAACTAGATGTAACCTTGGAGTCCTGAACGGTTGTCTCTCTATAATTGTTGATTTAGATTGTAATGTCAATGTCTGGGTGATGAAGGACTACGGTGTTAAGGAGTCTTGGGCCAAAGAACTTGACATTAGAGTGGAATATGGTGCAGCGTCTTGTTTATCTACTCAAGCTTTGAATTTTTCAAAAGAACGGCAAGTGTTGTTGTTACAGAATAGGTTGCAGGCGCATATTCCTGGAAGCAGGGGCTTTGTGGGGATTGAGGTCGATGGGATGAATTCTTCCATTGACGCTTCATGTCTCTATGTTCCAAGCTTTGTTTCGCTGAAAGTTGTCTTTGGGGATCAGAACTTGGAGCCTGGTAGATCTGAAAAATTGAGGGTTAGAGAAGCTGGTGAGTTGCAACAACTAGCACCAAACGAGACAAAGCTCGGTATGACCGGCACTTCAGAAGACCAATCTGTCACAAGTCAACGAGGGCAAGGTAATGTGAAAGCTAATGCAGTGGATCATGGGAATGCAGAAGCAGATCAACAAAATCTGCTATGTAAAGCTAGTGGATTGAATCAAGGGATTGTGCGATCTAAAGCTGCAGTAGTTGAACATAAACAACAGGCCATTAGAGTACCAAGCAAGGCAGAAACCACACATAGAGCTCGACCAATGCAAGACTCTGCATCATCATTATCATCCCTGCCAACACAGCCATCTGTTTCACAGCCATTAACTGGAAATCAGTTTATTCATCCCATAACCAAAGAAAGAAGACCAAGTTGCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

573

Amino Acids

63.31

Weight (kDa)

8.59

Isoelectric Point (pI)

45.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 36 - 76 2.1e-06 F-box domain
FBA_1 PF07734 125 - 420 1.5e-14 F-box associated beta propeller domain
FBA_3 PF08268 204 - 353 2.5e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 645
AasI GACNNNNNNGTC 1 cut(s) 1397
AccB7I CCANNNNNTGG 1 cut(s) 1664
AclI AACGTT 1 cut(s) 671
AclWI GGATC 6 cut(s) 209, 382, 485, 842, 1287, 1452
AcsI RAATTY 5 cut(s) 541, 788, 807, 1114, 1213
AcuI CTGAAG 1 cut(s) 1368
AcyI GRCGYC 1 cut(s) 324
AfaI GTAC 2 cut(s) 284, 1563
AfiI CCNNNNNNNGG 4 cut(s) 26, 279, 449, 1664
AgeI ACCGGT 1 cut(s) 449
AgsI TTSAA 9 cut(s) 301, 596, 680, 887, 901, 1114, 1122, 1501, 1538
AjnI CCWGG 2 cut(s) 1171, 1294
AjuI GAANNNNNNNTTGG 4 cut(s) 221, 253, 1240, 1272
Alw21I GWGCWC 1 cut(s) 1594
Alw26I GTCTC 6 cut(s) 693, 754, 864, 980, 1241, 1352
AlwI GGATC 6 cut(s) 209, 382, 485, 842, 1287, 1452
AoxI GGCC 4 cut(s) 232, 512, 1050, 1551
ApeKI GCWGC 3 cut(s) 357, 1085, 1526
ApoI RAATTY 5 cut(s) 541, 788, 807, 1114, 1213
AsiGI ACCGGT 1 cut(s) 449
AspLEI GCGC 1 cut(s) 1165
AspS9I GGNCC 4 cut(s) 29, 512, 716, 1050
AsuHPI GGTGA 6 cut(s) 217, 439, 464, 739, 1030, 1343
AvaII GGWCC 2 cut(s) 29, 716
BaeGI GKGCMC 1 cut(s) 84
BanII GRGCYC 1 cut(s) 1594
BauI CACGAG 1 cut(s) 693
BbsI GAAGAC 3 cut(s) 14, 1395, 1708
Bbv12I GWGCWC 1 cut(s) 1594
BbvI GCAGC 3 cut(s) 369, 1097, 1513
BccI CCATC 5 cut(s) 452, 536, 804, 1199, 1651
BceAI ACGGC 3 cut(s) 337, 379, 1145
BciT130I CCWGG 2 cut(s) 1173, 1296
BclI TGATCA 1 cut(s) 168
BcoDI GTCTC 6 cut(s) 693, 754, 864, 980, 1241, 1352
BfaI CTAG 7 cut(s) 77, 422, 461, 554, 945, 1346, 1491
BfmI CTRYAG 3 cut(s) 145, 519, 1527
BglII AGATCT 2 cut(s) 200, 1301
BisI GCNGC 3 cut(s) 358, 1086, 1527
BlsI GCNGC 3 cut(s) 359, 1087, 1528
Bme1390I CCNGG 2 cut(s) 1173, 1296
Bme18I GGWCC 2 cut(s) 29, 716
BmgT120I GGNCC 4 cut(s) 29, 512, 716, 1050
BmiI GGNNCC 3 cut(s) 18, 31, 1293
BmrFI CCNGG 2 cut(s) 1173, 1296
BmsI GCATC 3 cut(s) 295, 514, 1622
BpiI GAAGAC 3 cut(s) 14, 1395, 1708
BplI GAGNNNNNCTC 2 cut(s) 448, 480
BpmI CTGGAG 1 cut(s) 778
BpuEI CTTGAG 1 cut(s) 1089
BsaHI GRCGYC 1 cut(s) 324
BsaI GGTCTC 1 cut(s) 864
BsaJI CCNNGG 4 cut(s) 194, 273, 920, 955
BsaWI WCCGGW 1 cut(s) 449
Bsc4I CCNNNNNNNGG 4 cut(s) 26, 279, 449, 1664
Bse118I RCCGGY 2 cut(s) 449, 1376
Bse1I ACTGG 2 cut(s) 855, 1669
Bse3DI GCAATG 1 cut(s) 388
BseBI CCWGG 2 cut(s) 1173, 1296
BseDI CCNNGG 4 cut(s) 194, 273, 920, 955
BseGI GGATG 3 cut(s) 1215, 1625, 1681
BseLI CCNNNNNNNGG 4 cut(s) 26, 279, 449, 1664
BseMI GCAATG 1 cut(s) 388
BseMII CTCAG 2 cut(s) 225, 711
BseNI ACTGG 2 cut(s) 855, 1669
BseRI GAGGAG 2 cut(s) 486, 681
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 3 cut(s) 369, 1097, 1513
BseYI CCCAGC 1 cut(s) 33
BsgI GTGCAG 1 cut(s) 1104
BshFI GGCC 4 cut(s) 234, 514, 1052, 1553
BshTI ACCGGT 1 cut(s) 449
BsiHKAI GWGCWC 1 cut(s) 1594
BsiSI CCGG 2 cut(s) 450, 1377
BslI CCNNNNNNNGG 4 cut(s) 26, 279, 449, 1664
BsmAI GTCTC 6 cut(s) 693, 754, 864, 980, 1241, 1352
BsmI GAATGC 1 cut(s) 1459
BsnI GGCC 4 cut(s) 234, 514, 1052, 1553
Bso31I GGTCTC 1 cut(s) 864
Bsp1286I GDGCHC 2 cut(s) 84, 1594
Bsp19I CCATGG 1 cut(s) 273
BspANI GGCC 4 cut(s) 234, 514, 1052, 1553
BspCNI CTCAG 2 cut(s) 224, 712
BspHI TCATGA 1 cut(s) 535
BspLI GGNNCC 3 cut(s) 18, 31, 1293
BspMAI CTGCAG 3 cut(s) 149, 523, 1531
BspPI GGATC 6 cut(s) 209, 382, 485, 842, 1287, 1452
BspQI GCTCTTC 1 cut(s) 471
BspTNI GGTCTC 1 cut(s) 864
BsrDI GCAATG 1 cut(s) 388
BsrFI RCCGGY 2 cut(s) 449, 1376
BsrI ACTGG 2 cut(s) 855, 1669
BssAI RCCGGY 2 cut(s) 449, 1376
BssECI CCNNGG 4 cut(s) 194, 273, 920, 955
BssNI GRCGYC 1 cut(s) 324
BssSI CACGAG 1 cut(s) 693
BssT1I CCWWGG 4 cut(s) 194, 273, 920, 955
Bst2BI CACGAG 1 cut(s) 693
Bst2UI CCWGG 2 cut(s) 1173, 1296
Bst6I CTCTTC 1 cut(s) 471
BstACI GRCGYC 1 cut(s) 324
BstC8I GCNNGC 2 cut(s) 256, 1161
BstDEI CTNAG 3 cut(s) 211, 707, 720
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 3 cut(s) 1215, 1625, 1681
BstHHI GCGC 1 cut(s) 1165
BstMAI GTCTC 6 cut(s) 693, 754, 864, 980, 1241, 1352
BstMWI GCNNNNNNNGC 2 cut(s) 363, 1639
BstNI CCWGG 2 cut(s) 1173, 1296
BstSCI CCNGG 2 cut(s) 1171, 1294
BstSFI CTRYAG 3 cut(s) 145, 519, 1527
BstSLI GKGCMC 1 cut(s) 84
BstV1I GCAGC 3 cut(s) 369, 1097, 1513
BstV2I GAAGAC 3 cut(s) 14, 1395, 1708
BstX2I RGATCY 3 cut(s) 200, 214, 1301
BstYI RGATCY 3 cut(s) 200, 214, 1301
BsuRI GGCC 4 cut(s) 234, 514, 1052, 1553
BtgI CCRYGG 1 cut(s) 273
BtsCI GGATG 3 cut(s) 1215, 1625, 1681
BtsI GCAGTG 3 cut(s) 142, 332, 1446
BtsIMutI CAGTG 5 cut(s) 87, 142, 332, 848, 1446
Cac8I GCNNGC 2 cut(s) 256, 1161
CciI TCATGA 1 cut(s) 535
CfoI GCGC 1 cut(s) 1165
Cfr10I RCCGGY 2 cut(s) 449, 1376
Cfr13I GGNCC 4 cut(s) 29, 512, 716, 1050
CseI GACGC 4 cut(s) 172, 313, 1077, 1235
Csp6I GTAC 2 cut(s) 283, 1562
CspAI ACCGGT 1 cut(s) 449
CviAII CATG 5 cut(s) 274, 378, 536, 1233, 1448
CviQI GTAC 2 cut(s) 283, 1562
DdeI CTNAG 3 cut(s) 211, 707, 720
DrdI GACNNNNNNGTC 1 cut(s) 1397
DseDI GACNNNNNNGTC 1 cut(s) 1397
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
Ecl136II GAGCTC 1 cut(s) 1592
Eco130I CCWWGG 4 cut(s) 194, 273, 920, 955
Eco147I AGGCCT 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 1594
Eco31I GGTCTC 1 cut(s) 864
Eco32I GATATC 2 cut(s) 139, 824
Eco47I GGWCC 2 cut(s) 29, 716
Eco53kI GAGCTC 1 cut(s) 1592
Eco57I CTGAAG 1 cut(s) 1368
EcoICRI GAGCTC 1 cut(s) 1592
EcoRI GAATTC 1 cut(s) 1213
EcoRII CCWGG 2 cut(s) 1171, 1294
EcoRV GATATC 2 cut(s) 139, 824
EcoT14I CCWWGG 4 cut(s) 194, 273, 920, 955
EcoT38I GRGCYC 1 cut(s) 1594
ErhI CCWWGG 4 cut(s) 194, 273, 920, 955
FaeI CATG 5 cut(s) 277, 381, 539, 1236, 1451
FatI CATG 5 cut(s) 273, 377, 535, 1232, 1447
FbaI TGATCA 1 cut(s) 168
Fnu4HI GCNGC 3 cut(s) 358, 1086, 1527
FokI GGATG 3 cut(s) 1222, 1612, 1668
FriOI GRGCYC 1 cut(s) 1594
Fsp4HI GCNGC 3 cut(s) 358, 1086, 1527
FspBI CTAG 7 cut(s) 77, 422, 461, 554, 945, 1346, 1491
GlaI GCGC 1 cut(s) 1164
GluI GCNGC 3 cut(s) 358, 1086, 1527
GsaI CCCAGC 1 cut(s) 37
GsuI CTGGAG 1 cut(s) 778
HaeIII GGCC 4 cut(s) 234, 514, 1052, 1553
HapII CCGG 2 cut(s) 450, 1377
HgaI GACGC 4 cut(s) 172, 313, 1077, 1235
HhaI GCGC 1 cut(s) 1165
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 5 cut(s) 277, 381, 539, 1236, 1451
Hin6I GCGC 1 cut(s) 1163
HinP1I GCGC 1 cut(s) 1163
HincII GTYRAC 1 cut(s) 1409
HindII GTYRAC 1 cut(s) 1409
HindIII AAGCTT 2 cut(s) 1107, 1249
HinfI GANTC 8 cut(s) 150, 457, 557, 773, 960, 1043, 1501, 1607
HpaII CCGG 2 cut(s) 450, 1377
HphI GGTGA 6 cut(s) 217, 439, 464, 739, 1030, 1343
Hpy166II GTNNAC 3 cut(s) 225, 716, 1409
Hpy188I TCNGA 8 cut(s) 61, 96, 214, 269, 471, 1284, 1306, 1387
Hpy188III TCNNGA 6 cut(s) 160, 536, 554, 695, 804, 964
Hpy8I GTNNAC 3 cut(s) 225, 716, 1409
Hpy99I CGWCG 1 cut(s) 365
HpyAV CCTTC 3 cut(s) 525, 718, 1018
HpyCH4IV ACGT 2 cut(s) 639, 671
HpyF10VI GCNNNNNNNGC 2 cut(s) 363, 1639
HpyF3I CTNAG 3 cut(s) 211, 707, 720
HpySE526I ACGT 2 cut(s) 639, 671
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 5 cut(s) 277, 381, 539, 1236, 1451
HspAI GCGC 1 cut(s) 1163
Ksp22I TGATCA 1 cut(s) 168
LguI GCTCTTC 1 cut(s) 471
LmnI GCTCC 3 cut(s) 16, 753, 1291
Lsp1109I GCAGC 3 cut(s) 369, 1097, 1513
LweI GCATC 3 cut(s) 295, 514, 1622
MaeI CTAG 7 cut(s) 77, 422, 461, 554, 945, 1346, 1491
MaeII ACGT 2 cut(s) 639, 671
MaeIII GTNAC 6 cut(s) 325, 635, 727, 950, 1143, 1399
MboII GAAGA 9 cut(s) 16, 19, 74, 77, 458, 818, 1209, 1400, 1713
MflI RGATCY 3 cut(s) 200, 214, 1301
MhlI GDGCHC 2 cut(s) 84, 1594
MluCI AATT 7 cut(s) 541, 788, 807, 984, 1114, 1213, 1310
MlyI GAGTC 5 cut(s) 466, 767, 969, 1052, 1601
MseI TTAA 5 cut(s) 351, 684, 816, 1038, 1661
MslI CAYNNNNRTG 2 cut(s) 1070, 1452
MspI CCGG 2 cut(s) 450, 1377
MspR9I CCNGG 2 cut(s) 1173, 1296
Mva1269I GAATGC 1 cut(s) 1459
MvaI CCWGG 2 cut(s) 1173, 1296
MwoI GCNNNNNNNGC 2 cut(s) 363, 1639
NcoI CCATGG 1 cut(s) 273
NlaIII CATG 5 cut(s) 277, 381, 539, 1236, 1451
NlaIV GGNNCC 3 cut(s) 18, 31, 1293
NmuCI GTSAC 4 cut(s) 325, 635, 727, 1399
PagI TCATGA 1 cut(s) 535
PceI AGGCCT 1 cut(s) 234
PciSI GCTCTTC 1 cut(s) 471
PcsI WCGNNNNNNNCGW 1 cut(s) 709
PctI GAATGC 1 cut(s) 1459
PfeI GAWTC 3 cut(s) 150, 557, 1501
PflMI CCANNNNNTGG 1 cut(s) 1664
PfoI TCCNGGA 1 cut(s) 1171
PinAI ACCGGT 1 cut(s) 449
PkrI GCNGC 3 cut(s) 359, 1087, 1528
PleI GAGTC 5 cut(s) 465, 767, 968, 1051, 1601
PpsI GAGTC 5 cut(s) 465, 767, 968, 1051, 1601
PsiI TTATAA 1 cut(s) 645
Psp124BI GAGCTC 1 cut(s) 1594
Psp1406I AACGTT 1 cut(s) 671
Psp6I CCWGG 2 cut(s) 1171, 1294
PspFI CCCAGC 1 cut(s) 33
PspGI CCWGG 2 cut(s) 1171, 1294
PspN4I GGNNCC 3 cut(s) 18, 31, 1293
PspPI GGNCC 4 cut(s) 29, 512, 716, 1050
PstI CTGCAG 3 cut(s) 149, 523, 1531
PsuI RGATCY 3 cut(s) 200, 214, 1301
RsaI GTAC 2 cut(s) 284, 1563
RsaNI GTAC 2 cut(s) 283, 1562
RseI CAYNNNNRTG 2 cut(s) 1070, 1452
SacI GAGCTC 1 cut(s) 1594
SapI GCTCTTC 1 cut(s) 471
SaqAI TTAA 5 cut(s) 351, 684, 816, 1038, 1661
SatI GCNGC 3 cut(s) 358, 1086, 1527
Sau96I GGNCC 4 cut(s) 29, 512, 716, 1050
SchI GAGTC 5 cut(s) 466, 767, 969, 1052, 1601
ScrFI CCNGG 2 cut(s) 1173, 1296
SduI GDGCHC 2 cut(s) 84, 1594
SfaNI GCATC 3 cut(s) 295, 514, 1622
SfcI CTRYAG 3 cut(s) 145, 519, 1527
SgrAI CRCCGGYG 1 cut(s) 449
SinI GGWCC 2 cut(s) 29, 716
SmiMI CAYNNNNRTG 2 cut(s) 1070, 1452
SmlI CTYRAG 1 cut(s) 1104
SmoI CTYRAG 1 cut(s) 1104
Sse9I AATT 7 cut(s) 541, 788, 807, 984, 1114, 1213, 1310
SseBI AGGCCT 1 cut(s) 234
SspI AATATT 1 cut(s) 132
SspMI CTAG 7 cut(s) 77, 422, 461, 554, 945, 1346, 1491
SstI GAGCTC 1 cut(s) 1594
StuI AGGCCT 1 cut(s) 234
StyD4I CCNGG 2 cut(s) 1171, 1294
StyI CCWWGG 4 cut(s) 194, 273, 920, 955
TaiI ACGT 2 cut(s) 642, 674
TaqI TCGA 5 cut(s) 135, 294, 311, 1203, 1594
TasI AATT 7 cut(s) 541, 788, 807, 984, 1114, 1213, 1310
TfiI GAWTC 3 cut(s) 150, 557, 1501
Tru1I TTAA 5 cut(s) 351, 684, 816, 1038, 1661
Tru9I TTAA 5 cut(s) 351, 684, 816, 1038, 1661
TscAI CASTG 5 cut(s) 94, 149, 339, 855, 1446
TseFI GTSAC 4 cut(s) 325, 635, 727, 1399
TseI GCWGC 3 cut(s) 357, 1085, 1526
Tsp45I GTSAC 4 cut(s) 325, 635, 727, 1399
TspGWI ACGGA 2 cut(s) 29, 42
TspRI CASTG 5 cut(s) 94, 149, 339, 855, 1446
Van91I CCANNNNNTGG 1 cut(s) 1664
VpaK11BI GGWCC 2 cut(s) 29, 716
XapI RAATTY 5 cut(s) 541, 788, 807, 1114, 1213
XbaI TCTAGA 1 cut(s) 553
XcmI CCANNNNNNNNNTGG 1 cut(s) 918
XspI CTAG 7 cut(s) 77, 422, 461, 554, 945, 1346, 1491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.