Rmu_sc0001569.1_g000012

F-box protein At3g07870-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001569.1
Physical Location & Seq
Forward (+)
25563 .. 28310
2748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001569.1_g000012.1.cds

Sequence Viewer

Length: 1770 bp
atgaagataacggagctacaacggcaccgtgatccaccagacagaccccagaaacaatacaatgaagaagaagcagacctagggcacgacactgttcatcaaagaccctatcttttgcagttgccaaaccgcagaatagtcgacatccactgcagaatcccaatcaagacactcatcaaatgcaggcgcgtatgcaagtcttggcgatctttgttctcagatcctcgattcaccaaagacctatttgccagaacacccgcttgccatttggtgatagcttcgtgtaggtacttgctcgacttcaacgatgcttcgagcccaaatggtgtggcagcactggaaatgacatttcatagaagcagcgaagacattgtgggatcatgtaatggcttcctctgcttgtacaagaaggagctaaatcgtcacagattttacatatccaatcccattacatgtgagtctttacctcttccaaaacctaccaagcaagatgatccacctcccatttcttgtgggccttctgctgatgccatcactaataacatattagcttttctagaatccactcgtccaaagtcagttcaggaaattgtggatcaatcttgttgtgcatttgggtttgggtttagtcacatcagtggtgtctacaaagtagttctctttacttcttcaaggttaatagaagcttcatctccgcgtgagtttgtgcttagaagtggacctccgaaggtgatggttctgactgttggctctgcgagttggagacatattggggattctgttatgtgcaattttgaccatcagtcaggaatttatcttaatggatgtcttcattggataggtctacccactcagggttctcattttatatatgcgtttgacattgaaagtgagtgtttccaacagatacatctacctccttttattttggataacaagataactaaatgtaaccttggagttgtgaacgggtgcctctctataactgttccttcaagttataatttcacagtttgggtgatgaaggatcatggtgttaagaagccttggactaaagagcttgatattaaagtggatttgcatttagggtgtggttcttcaactcaagttctgaaatcttcaaaggaacggaaagtcttgttgttacagaataggttgcaggctcatattcctggaagaaggggctttatgggggttggggttgatgggataccatctttgattgacgcatcatatctctatgttccaagctttatttcacttaaagatgtctttgggggtcaaaacttgaagtctggtagatctgaagaatcgagtgttagagaagctggtgagttgcaacaacctgcaccaaatgagacaaagcccagaaggacctgcaatttaaaagaccaatctgtcataagtcaaagagggccaggtaatgtgaaagctaatgcagcggattatgggaatgctgaagcagcccagtggaatcttctacataaagctaatggattagatcaagggaatgtgcaatctaaagctgcagtagttgaacacaaacaacaggacatgagaccaccgaagaaggcaaaaaccacagatagggctcaaccaatagaagcctctgcctcccaaatggtgccgatatcaccatcatcatcccagtcaacacagccatctgtttcgctgccattaactggaaatcagttcattcatcccacaactgttctaaagatgaagaccaagcccccttcaaagagcaagagagctccagaaaagaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

589

Amino Acids

65.5

Weight (kDa)

9.23

Isoelectric Point (pI)

55.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1002
AasI GACNNNNNNGTC 1 cut(s) 1397
Acc36I ACCTGC 2 cut(s) 1354, 1385
AccB1I GGYRCC 3 cut(s) 24, 972, 1624
AccB7I CCANNNNNTGG 1 cut(s) 1682
AccI GTMKAC 3 cut(s) 141, 645, 844
AccII CGCG 2 cut(s) 189, 697
AciI CCGC 4 cut(s) 130, 258, 695, 1442
AclWI GGATC 6 cut(s) 26, 215, 385, 488, 603, 1035
AcsI RAATTY 1 cut(s) 810
AcuI CTGAAG 2 cut(s) 1326, 1479
AfaI GTAC 2 cut(s) 290, 404
AfiI CCNNNNNNNGG 3 cut(s) 854, 1587, 1682
AflIII ACRYGT 1 cut(s) 452
AgsI TTSAA 9 cut(s) 304, 672, 887, 996, 1101, 1122, 1291, 1538, 1740
AhdI GACNNNNNGTC 1 cut(s) 802
AjnI CCWGG 2 cut(s) 1171, 1417
AjuI GAANNNNNNNTTGG 2 cut(s) 1240, 1272
AleI CACNNNNGTG 1 cut(s) 636
Alw21I GWGCWC 1 cut(s) 1756
Alw26I GTCTC 3 cut(s) 757, 1352, 1552
AlwI GGATC 6 cut(s) 26, 215, 385, 488, 603, 1035
AoxI GGCC 2 cut(s) 515, 1415
ApeKI GCWGC 6 cut(s) 332, 360, 1439, 1463, 1526, 1672
ApoI RAATTY 1 cut(s) 810
AspA2I CCTAGG 1 cut(s) 79
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 4 cut(s) 515, 719, 1374, 1415
AsuHPI GGTGA 6 cut(s) 223, 283, 742, 1030, 1343, 1626
AvaII GGWCC 2 cut(s) 719, 1374
AvrII CCTAGG 1 cut(s) 79
BaeGI GKGCMC 1 cut(s) 87
BanI GGYRCC 3 cut(s) 24, 972, 1624
BanII GRGCYC 3 cut(s) 320, 1594, 1756
BbsI GAAGAC 3 cut(s) 372, 821, 1730
Bbv12I GWGCWC 1 cut(s) 1756
BbvI GCAGC 6 cut(s) 344, 372, 1451, 1475, 1513, 1659
BccI CCATC 7 cut(s) 539, 727, 807, 1199, 1222, 1645, 1669
BceAI ACGGC 1 cut(s) 38
BcgI CGANNNNNNTGC 2 cut(s) 121, 155
BciT130I CCWGG 2 cut(s) 1173, 1419
BciVI GTATCC 1 cut(s) 1203
BcoDI GTCTC 3 cut(s) 757, 1352, 1552
BfaI CTAG 2 cut(s) 80, 557
BfmI CTRYAG 2 cut(s) 151, 1527
BfuAI ACCTGC 2 cut(s) 1354, 1385
BfuI GTATCC 1 cut(s) 1203
BglII AGATCT 1 cut(s) 1301
BisI GCNGC 6 cut(s) 333, 361, 1440, 1464, 1527, 1673
BlnI CCTAGG 1 cut(s) 79
BlsI GCNGC 6 cut(s) 334, 362, 1441, 1465, 1528, 1674
Bme1390I CCNGG 2 cut(s) 1173, 1419
Bme18I GGWCC 2 cut(s) 719, 1374
BmeRI GACNNNNNGTC 1 cut(s) 802
BmgT120I GGNCC 4 cut(s) 515, 719, 1374, 1415
BmiI GGNNCC 3 cut(s) 26, 974, 1626
BmrFI CCNGG 2 cut(s) 1173, 1419
BmrI ACTGGG 2 cut(s) 1462, 1642
BmsI GCATC 3 cut(s) 298, 517, 1238
BmuI ACTGGG 2 cut(s) 1462, 1642
BpiI GAAGAC 3 cut(s) 372, 821, 1730
BpmI CTGGAG 1 cut(s) 1740
BpuEI CTTGAG 1 cut(s) 1089
BsaI GGTCTC 1 cut(s) 1552
BsaJI CCNNGG 3 cut(s) 79, 955, 1046
Bsc4I CCNNNNNNNGG 3 cut(s) 854, 1587, 1682
Bse1I ACTGG 4 cut(s) 342, 1468, 1648, 1687
BseBI CCWGG 2 cut(s) 1173, 1419
BseDI CCNNGG 3 cut(s) 79, 955, 1046
BseGI GGATG 4 cut(s) 144, 830, 1643, 1699
BseLI CCNNNNNNNGG 3 cut(s) 854, 1587, 1682
BseMII CTCAG 2 cut(s) 231, 866
BseNI ACTGG 4 cut(s) 342, 1468, 1648, 1687
BseSI GKGCMC 1 cut(s) 87
BseXI GCAGC 6 cut(s) 344, 372, 1451, 1475, 1513, 1659
BsgI GTGCAG 1 cut(s) 1332
Bsh1236I CGCG 2 cut(s) 189, 697
BshFI GGCC 2 cut(s) 517, 1417
BshNI GGYRCC 3 cut(s) 24, 972, 1624
BsiHKAI GWGCWC 1 cut(s) 1756
BslI CCNNNNNNNGG 3 cut(s) 854, 1587, 1682
BsmAI GTCTC 3 cut(s) 757, 1352, 1552
BsmI GAATGC 1 cut(s) 1459
BsnI GGCC 2 cut(s) 517, 1417
Bso31I GGTCTC 1 cut(s) 1552
Bsp1286I GDGCHC 4 cut(s) 87, 320, 1594, 1756
Bsp1407I TGTACA 1 cut(s) 402
Bsp143I GATC 9 cut(s) 31, 206, 220, 377, 493, 595, 1027, 1301, 1501
BspACI CCGC 4 cut(s) 130, 258, 695, 1442
BspANI GGCC 2 cut(s) 517, 1417
BspCNI CTCAG 2 cut(s) 230, 865
BspFNI CGCG 2 cut(s) 189, 697
BspLI GGNNCC 3 cut(s) 26, 974, 1626
BspMAI CTGCAG 2 cut(s) 155, 1531
BspMI ACCTGC 2 cut(s) 1354, 1385
BspPI GGATC 6 cut(s) 26, 215, 385, 488, 603, 1035
BspT107I GGYRCC 3 cut(s) 24, 972, 1624
BspTNI GGTCTC 1 cut(s) 1552
BsrGI TGTACA 1 cut(s) 402
BsrI ACTGG 4 cut(s) 342, 1468, 1648, 1687
BssECI CCNNGG 3 cut(s) 79, 955, 1046
BssMI GATC 9 cut(s) 31, 206, 220, 377, 493, 595, 1027, 1301, 1501
BssT1I CCWWGG 3 cut(s) 79, 955, 1046
Bst2UI CCWGG 2 cut(s) 1173, 1419
Bst4CI ACNGT 6 cut(s) 29, 94, 745, 988, 1012, 1711
Bst6I CTCTTC 1 cut(s) 474
BstAUI TGTACA 1 cut(s) 402
BstC8I GCNNGC 3 cut(s) 185, 262, 1161
BstDEI CTNAG 3 cut(s) 217, 710, 852
BstF5I GGATG 4 cut(s) 144, 830, 1643, 1699
BstFNI CGCG 2 cut(s) 189, 697
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 9 cut(s) 34, 209, 223, 380, 496, 598, 1030, 1304, 1504
BstMAI GTCTC 3 cut(s) 757, 1352, 1552
BstMBI GATC 9 cut(s) 31, 206, 220, 377, 493, 595, 1027, 1301, 1501
BstMWI GCNNNNNNNGC 4 cut(s) 22, 396, 1439, 1463
BstNI CCWGG 2 cut(s) 1173, 1419
BstNSI RCATGY 1 cut(s) 456
BstSCI CCNGG 2 cut(s) 1171, 1417
BstSFI CTRYAG 2 cut(s) 151, 1527
BstSLI GKGCMC 1 cut(s) 87
BstUI CGCG 2 cut(s) 189, 697
BstV1I GCAGC 6 cut(s) 344, 372, 1451, 1475, 1513, 1659
BstV2I GAAGAC 3 cut(s) 372, 821, 1730
BstX2I RGATCY 2 cut(s) 220, 1301
BstYI RGATCY 2 cut(s) 220, 1301
BsuI GTATCC 1 cut(s) 1203
BsuRI GGCC 2 cut(s) 517, 1417
BtsCI GGATG 4 cut(s) 144, 830, 1643, 1699
BtsI GCAGTG 1 cut(s) 148
BtsIMutI CAGTG 5 cut(s) 90, 148, 335, 643, 1475
BveI ACCTGC 2 cut(s) 1354, 1385
Cac8I GCNNGC 3 cut(s) 185, 262, 1161
CfoI GCGC 1 cut(s) 189
Cfr13I GGNCC 4 cut(s) 515, 719, 1374, 1415
CseI GACGC 1 cut(s) 1235
Csp6I GTAC 2 cut(s) 289, 403
CspCI CAANNNNNGTGG 2 cut(s) 309, 344
CviAII CATG 4 cut(s) 381, 453, 1031, 1555
CviQI GTAC 2 cut(s) 289, 403
DdeI CTNAG 3 cut(s) 217, 710, 852
DpnI GATC 9 cut(s) 33, 208, 222, 379, 495, 597, 1029, 1303, 1503
DpnII GATC 9 cut(s) 31, 206, 220, 377, 493, 595, 1027, 1301, 1501
DraI TTTAAA 1 cut(s) 1386
DrdI GACNNNNNNGTC 1 cut(s) 1397
DriI GACNNNNNGTC 1 cut(s) 802
DseDI GACNNNNNNGTC 1 cut(s) 1397
Eam1104I CTCTTC 1 cut(s) 474
Eam1105I GACNNNNNGTC 1 cut(s) 802
EarI CTCTTC 1 cut(s) 474
Ecl136II GAGCTC 1 cut(s) 1754
Eco130I CCWWGG 3 cut(s) 79, 955, 1046
Eco24I GRGCYC 3 cut(s) 320, 1594, 1756
Eco31I GGTCTC 1 cut(s) 1552
Eco32I GATATC 1 cut(s) 1632
Eco47I GGWCC 2 cut(s) 719, 1374
Eco53kI GAGCTC 1 cut(s) 1754
Eco57I CTGAAG 2 cut(s) 1326, 1479
EcoICRI GAGCTC 1 cut(s) 1754
EcoO109I RGGNCCY 1 cut(s) 1374
EcoRII CCWGG 2 cut(s) 1171, 1417
EcoRV GATATC 1 cut(s) 1632
EcoT14I CCWWGG 3 cut(s) 79, 955, 1046
EcoT38I GRGCYC 3 cut(s) 320, 1594, 1756
ErhI CCWWGG 3 cut(s) 79, 955, 1046
FaeI CATG 4 cut(s) 384, 456, 1034, 1558
FatI CATG 4 cut(s) 380, 452, 1030, 1554
FauI CCCGC 1 cut(s) 265
FblI GTMKAC 3 cut(s) 141, 645, 844
Fnu4HI GCNGC 6 cut(s) 333, 361, 1440, 1464, 1527, 1673
FokI GGATG 4 cut(s) 131, 837, 1630, 1686
FriOI GRGCYC 3 cut(s) 320, 1594, 1756
Fsp4HI GCNGC 6 cut(s) 333, 361, 1440, 1464, 1527, 1673
FspBI CTAG 2 cut(s) 80, 557
GlaI GCGC 1 cut(s) 188
GluI GCNGC 6 cut(s) 333, 361, 1440, 1464, 1527, 1673
GsuI CTGGAG 1 cut(s) 1740
HaeIII GGCC 2 cut(s) 517, 1417
HgaI GACGC 1 cut(s) 1235
HhaI GCGC 1 cut(s) 189
Hin1II CATG 4 cut(s) 384, 456, 1034, 1558
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HincII GTYRAC 2 cut(s) 142, 1653
HindII GTYRAC 2 cut(s) 142, 1653
HindIII AAGCTT 2 cut(s) 684, 1249
HinfI GANTC 7 cut(s) 156, 228, 458, 560, 776, 1310, 1474
HphI GGTGA 6 cut(s) 223, 283, 742, 1030, 1343, 1626
Hpy166II GTNNAC 6 cut(s) 142, 646, 719, 845, 967, 1653
Hpy188I TCNGA 5 cut(s) 220, 726, 741, 1113, 1306
Hpy188III TCNNGA 5 cut(s) 166, 557, 584, 807, 1757
Hpy8I GTNNAC 6 cut(s) 142, 646, 719, 845, 967, 1653
HpyAV CCTTC 9 cut(s) 403, 528, 721, 1002, 1018, 1173, 1365, 1564, 1746
HpyCH4III ACNGT 6 cut(s) 29, 94, 745, 988, 1012, 1711
HpyF10VI GCNNNNNNNGC 4 cut(s) 22, 396, 1439, 1463
HpyF3I CTNAG 3 cut(s) 217, 710, 852
Hsp92II CATG 4 cut(s) 384, 456, 1034, 1558
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 9 cut(s) 31, 206, 220, 377, 493, 595, 1027, 1301, 1501
LmnI GCTCC 3 cut(s) 13, 412, 1759
Lsp1109I GCAGC 6 cut(s) 344, 372, 1451, 1475, 1513, 1659
LweI GCATC 3 cut(s) 298, 517, 1238
MaeI CTAG 2 cut(s) 80, 557
MaeIII GTNAC 4 cut(s) 422, 629, 950, 1143
MalI GATC 9 cut(s) 33, 208, 222, 379, 495, 597, 1029, 1303, 1503
MboI GATC 9 cut(s) 31, 206, 220, 377, 493, 595, 1027, 1301, 1501
MflI RGATCY 2 cut(s) 220, 1301
MhlI GDGCHC 4 cut(s) 87, 320, 1594, 1756
MluCI AATT 5 cut(s) 588, 790, 810, 1003, 1381
MlyI GAGTC 1 cut(s) 467
MmeI TCCRAC 2 cut(s) 740, 925
MseI TTAA 7 cut(s) 677, 819, 1038, 1068, 1263, 1385, 1679
MslI CAYNNNNRTG 1 cut(s) 636
MspA1I CMGCKG 1 cut(s) 1442
MspR9I CCNGG 2 cut(s) 1173, 1419
Mva1269I GAATGC 1 cut(s) 1459
MvaI CCWGG 2 cut(s) 1173, 1419
MvnI CGCG 2 cut(s) 189, 697
MwoI GCNNNNNNNGC 4 cut(s) 22, 396, 1439, 1463
NdeII GATC 9 cut(s) 31, 206, 220, 377, 493, 595, 1027, 1301, 1501
NlaIII CATG 4 cut(s) 384, 456, 1034, 1558
NlaIV GGNNCC 3 cut(s) 26, 974, 1626
NmuCI GTSAC 2 cut(s) 422, 629
NspI RCATGY 1 cut(s) 456
OliI CACNNNNGTG 1 cut(s) 636
PciI ACATGT 1 cut(s) 452
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PctI GAATGC 1 cut(s) 1459
PfeI GAWTC 6 cut(s) 156, 228, 560, 776, 1310, 1474
PflMI CCANNNNNTGG 1 cut(s) 1682
PfoI TCCNGGA 1 cut(s) 1171
PkrI GCNGC 6 cut(s) 334, 362, 1441, 1465, 1528, 1674
PleI GAGTC 1 cut(s) 466
PpsI GAGTC 1 cut(s) 466
PpuMI RGGWCCY 1 cut(s) 1374
PscI ACATGT 1 cut(s) 452
PsiI TTATAA 1 cut(s) 1002
Psp124BI GAGCTC 1 cut(s) 1756
Psp5II RGGWCCY 1 cut(s) 1374
Psp6I CCWGG 2 cut(s) 1171, 1417
PspGI CCWGG 2 cut(s) 1171, 1417
PspN4I GGNNCC 3 cut(s) 26, 974, 1626
PspPI GGNCC 4 cut(s) 515, 719, 1374, 1415
PspPPI RGGWCCY 1 cut(s) 1374
PstI CTGCAG 2 cut(s) 155, 1531
PsuI RGATCY 2 cut(s) 220, 1301
RsaI GTAC 2 cut(s) 290, 404
RsaNI GTAC 2 cut(s) 289, 403
RseI CAYNNNNRTG 1 cut(s) 636
SacI GAGCTC 1 cut(s) 1756
SalI GTCGAC 1 cut(s) 140
SaqAI TTAA 7 cut(s) 677, 819, 1038, 1068, 1263, 1385, 1679
SatI GCNGC 6 cut(s) 333, 361, 1440, 1464, 1527, 1673
Sau3AI GATC 9 cut(s) 31, 206, 220, 377, 493, 595, 1027, 1301, 1501
Sau96I GGNCC 4 cut(s) 515, 719, 1374, 1415
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 2 cut(s) 1173, 1419
SduI GDGCHC 4 cut(s) 87, 320, 1594, 1756
SfaNI GCATC 3 cut(s) 298, 517, 1238
SfcI CTRYAG 2 cut(s) 151, 1527
SinI GGWCC 2 cut(s) 719, 1374
SmiMI CAYNNNNRTG 1 cut(s) 636
SmlI CTYRAG 1 cut(s) 1104
SmoI CTYRAG 1 cut(s) 1104
Sse9I AATT 5 cut(s) 588, 790, 810, 1003, 1381
SsiI CCGC 4 cut(s) 130, 258, 695, 1442
SspMI CTAG 2 cut(s) 80, 557
SstI GAGCTC 1 cut(s) 1756
StyD4I CCNGG 2 cut(s) 1171, 1417
StyI CCWWGG 3 cut(s) 79, 955, 1046
TaaI ACNGT 6 cut(s) 29, 94, 745, 988, 1012, 1711
TaqI TCGA 5 cut(s) 141, 226, 297, 314, 1313
TasI AATT 5 cut(s) 588, 790, 810, 1003, 1381
TatI WGTACW 1 cut(s) 402
TfiI GAWTC 6 cut(s) 156, 228, 560, 776, 1310, 1474
Tru1I TTAA 7 cut(s) 677, 819, 1038, 1068, 1263, 1385, 1679
Tru9I TTAA 7 cut(s) 677, 819, 1038, 1068, 1263, 1385, 1679
TscAI CASTG 5 cut(s) 97, 155, 342, 643, 1475
TseFI GTSAC 2 cut(s) 422, 629
TseI GCWGC 6 cut(s) 332, 360, 1439, 1463, 1526, 1672
Tsp45I GTSAC 2 cut(s) 422, 629
TspGWI ACGGA 2 cut(s) 26, 1144
TspRI CASTG 5 cut(s) 97, 155, 342, 643, 1475
Van91I CCANNNNNTGG 1 cut(s) 1682
VpaK11BI GGWCC 2 cut(s) 719, 1374
XapI RAATTY 1 cut(s) 810
XbaI TCTAGA 1 cut(s) 556
XceI RCATGY 1 cut(s) 456
XmaJI CCTAGG 1 cut(s) 79
XmiI GTMKAC 3 cut(s) 141, 645, 844
XspI CTAG 2 cut(s) 80, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.