Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0013654

Physical Location & Seq

Genomic Coordinates Reverse (-)

40266887 .. 40271652

Gene Structure 4766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG186700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGAAGATAACGGAGCTACAACGGCACCGTGATCCACCAGACAGACCCCAGAAACAATACAATGAAGAAGAAGCAGACCTAGGGCACGACACTGTTCATCAAAGACCCTATCTTTTGCAGTTGCCAAACCGCAGAATAGTCGACATCCACTGCAGAATCCCAATCAAGACATTCATCAAATGCAGGCGCGTATGCAAGTCTTGGCGATCTTTGTTCTCAGATCCTCGATTCACCAAAGACCTACATGCCAGAACACCCACTTGCTATTTGGTGATGGCTTCGGGTAGGTACTTCTTGCTTGACTTCAATGATACTTCGAGCCCGAACGGCGTCGCAGCACTGAAAACAACATTTCTTAGAAGCAGCGACGACTTTGTGGGATCATGCAATGGCTTCCTCTGTTTATACAAGAAGCAGCTAAACCGTCACGGTTTTTTCATATCCAATCCCATCACCGGTGAGTGTTTACCTCTTCCGAAACCGATGAAGCAAGATGATCCTCCCCCCATTTCCTGTGGGCCTTCTGCTGATGCCATCACTAATAACATATTGGCTTTTCTAGAATCCACTCGTCCAAAGTCTGTTAAGGAAATTGTGTATCAATCTTGTTGTGCATTTGGGTTTGGGTTTAGTCCCATCAGTGGTGTCTACAAAGTAGTTCTCTTTACTTCTTCAAGGTTAATGGAAGCTTCATCTCCGCGTGAGTTTGTGCTTAGAAGTGGACCTCCGAAGGTGATGGTTCTGACTGTTGGTTCTGGGAGTTGGAGACATATTGGGGACTCTGTTATGTGCAATTTTGACCATCAGTCAGGAATTTATCTTAATGGATGTCTTCATTGGATAGGTCTACCCACTCAGGGTTCTCATTTTATATATGCGTTTGACATTGAAATTTGGGTGATGAAGGATCATGGTGTTAAGAAGCCTTGGACTAAAGAGCTTGATATTAAAGTGGATTTGCATTTAGGGCTCATATTCCTGGAAGAAGGGGCTTTATGGGGTGTTGGGGTTGATGGGATACCATCTTTGATTGACGCATCATATCTCTATGTTCCAAGCTTTGTTTCACTTAAAGATGTCTTTGGGGGTCAAAACTTGAAGTCTGGTAGATCTGAAGAATCGAGTGTTAGAGAAGCTGGTGAGTTGCAACAACCTGCACCGAATGAGACAAAGCCCAGAAGGACCTGCAATTTAAAAGACCAATCTGTCATAAGTCAAAGAGGGCCAGGTAATGTGAAAGCTAATGCAGCGGATTATGGGAATGCTGAAGCAGCCCAGCGGAATCTTCTATATAAAGCTAATGGATTAGATCAAGGGAATGTGCAATCTAAAGCTGCAGTAGTTGAACACCAAACAACAGGACATGAGACCACTGAAGAAGGCAAAAACCACAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

465

Amino Acids

51.94

Weight (kDa)

8.58

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	114 - 297	1.1e-11	F-box associated beta propeller domain
FBA_1	PF07734	126 - 296	9.4e-07	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13040 FvH4_4g13060
malus_domestica	MD04G1020200.v1.1
rosa_chinensis	RchiOBHm_Chr4g0412781 RchiOBHm_Chr4g0412791
rosa_laevigata	RLG00000008259
rosa_multiflora	Rmu_sc0001238.1_g000047 Rmu_sc0001569.1_g000012 Rmu_sc0041034.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357040
rosa_rugosa	Rorug04G0116800
rosa_samantha	Rh4AG175500 Rh4BG175300 Rh4BG175400 Rh4CG186700 Rh4DG172300 Rh6CG426300
rosa_wichuraiana	Rw4G014730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1205
Acc36I	ACCTGC	2 cut(s)	1162, 1193
AccB1I	GGYRCC	1 cut(s)	24
AccI	GTMKAC	3 cut(s)	141, 648, 847
AccII	CGCG	2 cut(s)	189, 700
AciI	CCGC	4 cut(s)	130, 698, 1250, 1279
AclWI	GGATC	5 cut(s)	26, 215, 388, 491, 915
AcsI	RAATTY	2 cut(s)	813, 891
AcuI	CTGAAG	3 cut(s)	1134, 1287, 1395
AcyI	GRCGYC	1 cut(s)	330
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	3 cut(s)	455, 641, 857
AgeI	ACCGGT	1 cut(s)	455
AgsI	TTSAA	5 cut(s)	307, 675, 890, 1099, 1346
AhdI	GACNNNNNGTC	1 cut(s)	805
AjnI	CCWGG	2 cut(s)	978, 1225
AjuI	GAANNNNNNNTTGG	2 cut(s)	1048, 1080
AluBI	AGCT	9 cut(s)	16, 418, 689, 940, 1059, 1136, 1241, 1298, 1334
AluI	AGCT	9 cut(s)	16, 418, 689, 940, 1059, 1136, 1241, 1298, 1334
Alw26I	GTCTC	3 cut(s)	760, 1160, 1361
AlwI	GGATC	5 cut(s)	26, 215, 388, 491, 915
AoxI	GGCC	2 cut(s)	518, 1223
ApeKI	GCWGC	6 cut(s)	335, 363, 415, 1247, 1271, 1334
ApoI	RAATTY	2 cut(s)	813, 891
AsiGI	ACCGGT	1 cut(s)	455
AspA2I	CCTAGG	1 cut(s)	79
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	4 cut(s)	518, 722, 1182, 1223
AsuHPI	GGTGA	7 cut(s)	223, 283, 445, 470, 745, 910, 1151
AvaII	GGWCC	2 cut(s)	722, 1182
AvrII	CCTAGG	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	24
BanII	GRGCYC	2 cut(s)	323, 972
BbsI	GAAGAC	1 cut(s)	824
BbvI	GCAGC	6 cut(s)	347, 375, 427, 1259, 1283, 1321
BccI	CCATC	8 cut(s)	268, 458, 542, 644, 730, 810, 1007, 1030
BceAI	ACGGC	2 cut(s)	38, 343
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BciT130I	CCWGG	2 cut(s)	980, 1227
BciVI	GTATCC	1 cut(s)	1011
BcoDI	GTCTC	3 cut(s)	760, 1160, 1361
BfaI	CTAG	2 cut(s)	80, 560
BfmI	CTRYAG	2 cut(s)	151, 1335
BfuAI	ACCTGC	2 cut(s)	1162, 1193
BfuI	GTATCC	1 cut(s)	1011
BglI	GCCNNNNNGGC	1 cut(s)	327
BglII	AGATCT	1 cut(s)	1109
BisI	GCNGC	6 cut(s)	336, 364, 416, 1248, 1272, 1335
BlnI	CCTAGG	1 cut(s)	79
BlsI	GCNGC	6 cut(s)	337, 365, 417, 1249, 1273, 1336
Bme1390I	CCNGG	2 cut(s)	980, 1227
Bme18I	GGWCC	2 cut(s)	722, 1182
BmeRI	GACNNNNNGTC	1 cut(s)	805
BmgT120I	GGNCC	4 cut(s)	518, 722, 1182, 1223
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	2 cut(s)	980, 1227
BmsI	GCATC	2 cut(s)	520, 1046
BpiI	GAAGAC	1 cut(s)	824
BsaHI	GRCGYC	1 cut(s)	330
BsaI	GGTCTC	1 cut(s)	1361
BsaJI	CCNNGG	2 cut(s)	79, 926
BsaWI	WCCGGW	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	3 cut(s)	455, 641, 857
Bse118I	RCCGGY	1 cut(s)	455
Bse3DI	GCAATG	1 cut(s)	394
BseBI	CCWGG	2 cut(s)	980, 1227
BseDI	CCNNGG	2 cut(s)	79, 926
BseGI	GGATG	2 cut(s)	144, 833
BseLI	CCNNNNNNNGG	3 cut(s)	455, 641, 857
BseMI	GCAATG	1 cut(s)	394
BseMII	CTCAG	2 cut(s)	231, 869
BseSI	GKGCMC	1 cut(s)	87
BseXI	GCAGC	6 cut(s)	347, 375, 427, 1259, 1283, 1321
BseYI	CCCAGC	1 cut(s)	1275
BsgI	GTGCAG	1 cut(s)	1140
Bsh1236I	CGCG	2 cut(s)	189, 700
BshFI	GGCC	2 cut(s)	520, 1225
BshNI	GGYRCC	1 cut(s)	24
BshTI	ACCGGT	1 cut(s)	455
BsiSI	CCGG	1 cut(s)	456
BslFI	GGGAC	2 cut(s)	618, 791
BslI	CCNNNNNNNGG	3 cut(s)	455, 641, 857
BsmAI	GTCTC	3 cut(s)	760, 1160, 1361
BsmFI	GGGAC	2 cut(s)	618, 791
BsmI	GAATGC	1 cut(s)	1267
BsnI	GGCC	2 cut(s)	520, 1225
Bso31I	GGTCTC	1 cut(s)	1361
Bsp1286I	GDGCHC	3 cut(s)	87, 323, 972
Bsp143I	GATC	8 cut(s)	31, 206, 220, 380, 496, 907, 1109, 1309
BspACI	CCGC	4 cut(s)	130, 698, 1250, 1279
BspANI	GGCC	2 cut(s)	520, 1225
BspCNI	CTCAG	2 cut(s)	230, 868
BspFNI	CGCG	2 cut(s)	189, 700
BspLI	GGNNCC	1 cut(s)	26
BspMAI	CTGCAG	2 cut(s)	155, 1339
BspMI	ACCTGC	2 cut(s)	1162, 1193
BspPI	GGATC	5 cut(s)	26, 215, 388, 491, 915
BspT107I	GGYRCC	1 cut(s)	24
BspTNI	GGTCTC	1 cut(s)	1361
BsrDI	GCAATG	1 cut(s)	394
BsrFI	RCCGGY	1 cut(s)	455
BssAI	RCCGGY	1 cut(s)	455
BssECI	CCNNGG	2 cut(s)	79, 926
BssMI	GATC	8 cut(s)	31, 206, 220, 380, 496, 907, 1109, 1309
BssNI	GRCGYC	1 cut(s)	330
BssT1I	CCWWGG	2 cut(s)	79, 926
Bst2UI	CCWGG	2 cut(s)	980, 1227
Bst4CI	ACNGT	5 cut(s)	29, 94, 425, 431, 748
Bst6I	CTCTTC	1 cut(s)	477
BstACI	GRCGYC	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	4 cut(s)	217, 356, 713, 855
BstF5I	GGATG	2 cut(s)	144, 833
BstFNI	CGCG	2 cut(s)	189, 700
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	8 cut(s)	34, 209, 223, 383, 499, 910, 1112, 1312
BstMAI	GTCTC	3 cut(s)	760, 1160, 1361
BstMBI	GATC	8 cut(s)	31, 206, 220, 380, 496, 907, 1109, 1309
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 327, 967, 1247, 1271
BstNI	CCWGG	2 cut(s)	980, 1227
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	2 cut(s)	978, 1225
BstSFI	CTRYAG	2 cut(s)	151, 1335
BstSLI	GKGCMC	1 cut(s)	87
BstUI	CGCG	2 cut(s)	189, 700
BstV1I	GCAGC	6 cut(s)	347, 375, 427, 1259, 1283, 1321
BstV2I	GAAGAC	1 cut(s)	824
BstX2I	RGATCY	2 cut(s)	220, 1109
BstYI	RGATCY	2 cut(s)	220, 1109
BsuI	GTATCC	1 cut(s)	1011
BsuRI	GGCC	2 cut(s)	520, 1225
BtsCI	GGATG	2 cut(s)	144, 833
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	5 cut(s)	90, 148, 338, 646, 1371
BveI	ACCTGC	2 cut(s)	1162, 1193
Cac8I	GCNNGC	1 cut(s)	185
CfoI	GCGC	1 cut(s)	189
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	4 cut(s)	518, 722, 1182, 1223
CseI	GACGC	2 cut(s)	319, 1043
Csp6I	GTAC	1 cut(s)	289
CspAI	ACCGGT	1 cut(s)	455
CviAII	CATG	4 cut(s)	245, 384, 911, 1364
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	4 cut(s)	217, 356, 713, 855
DpnI	GATC	8 cut(s)	33, 208, 222, 382, 498, 909, 1111, 1311
DpnII	GATC	8 cut(s)	31, 206, 220, 380, 496, 907, 1109, 1309
DraI	TTTAAA	1 cut(s)	1194
DrdI	GACNNNNNNGTC	1 cut(s)	1205
DriI	GACNNNNNGTC	1 cut(s)	805
DseDI	GACNNNNNNGTC	1 cut(s)	1205
Eam1104I	CTCTTC	1 cut(s)	477
Eam1105I	GACNNNNNGTC	1 cut(s)	805
EarI	CTCTTC	1 cut(s)	477
Eco130I	CCWWGG	2 cut(s)	79, 926
Eco24I	GRGCYC	2 cut(s)	323, 972
Eco31I	GGTCTC	1 cut(s)	1361
Eco47I	GGWCC	2 cut(s)	722, 1182
Eco57I	CTGAAG	3 cut(s)	1134, 1287, 1395
EcoO109I	RGGNCCY	1 cut(s)	1182
EcoRII	CCWGG	2 cut(s)	978, 1225
EcoT14I	CCWWGG	2 cut(s)	79, 926
EcoT38I	GRGCYC	2 cut(s)	323, 972
ErhI	CCWWGG	2 cut(s)	79, 926
FaeI	CATG	4 cut(s)	248, 387, 914, 1367
FaqI	GGGAC	2 cut(s)	618, 791
FatI	CATG	4 cut(s)	244, 383, 910, 1363
FblI	GTMKAC	3 cut(s)	141, 648, 847
Fnu4HI	GCNGC	6 cut(s)	336, 364, 416, 1248, 1272, 1335
FokI	GGATG	2 cut(s)	131, 840
FriOI	GRGCYC	2 cut(s)	323, 972
Fsp4HI	GCNGC	6 cut(s)	336, 364, 416, 1248, 1272, 1335
FspBI	CTAG	2 cut(s)	80, 560
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	6 cut(s)	336, 364, 416, 1248, 1272, 1335
GsaI	CCCAGC	1 cut(s)	1279
HaeIII	GGCC	2 cut(s)	520, 1225
HapII	CCGG	1 cut(s)	456
HgaI	GACGC	2 cut(s)	319, 1043
HhaI	GCGC	1 cut(s)	189
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	4 cut(s)	248, 387, 914, 1367
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	2 cut(s)	687, 1057
HinfI	GANTC	6 cut(s)	156, 228, 563, 779, 1118, 1282
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	7 cut(s)	223, 283, 445, 470, 745, 910, 1151
Hpy166II	GTNNAC	5 cut(s)	142, 467, 649, 722, 848
Hpy188I	TCNGA	5 cut(s)	220, 477, 729, 744, 1114
Hpy188III	TCNNGA	3 cut(s)	166, 560, 810
Hpy8I	GTNNAC	5 cut(s)	142, 467, 649, 722, 848
Hpy99I	CGWCG	2 cut(s)	335, 371
HpyAV	CCTTC	6 cut(s)	531, 724, 898, 980, 1173, 1373
HpyCH4III	ACNGT	5 cut(s)	29, 94, 425, 431, 748
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 327, 967, 1247, 1271
HpyF3I	CTNAG	4 cut(s)	217, 356, 713, 855
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	4 cut(s)	248, 387, 914, 1367
HspAI	GCGC	1 cut(s)	187
Kzo9I	GATC	8 cut(s)	31, 206, 220, 380, 496, 907, 1109, 1309
LmnI	GCTCC	1 cut(s)	13
Lsp1109I	GCAGC	6 cut(s)	347, 375, 427, 1259, 1283, 1321
LweI	GCATC	2 cut(s)	520, 1046
MaeI	CTAG	2 cut(s)	80, 560
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	8 cut(s)	33, 208, 222, 382, 498, 909, 1111, 1311
MboI	GATC	8 cut(s)	31, 206, 220, 380, 496, 907, 1109, 1309
MflI	RGATCY	2 cut(s)	220, 1109
MhlI	GDGCHC	3 cut(s)	87, 323, 972
MluCI	AATT	5 cut(s)	591, 793, 813, 891, 1189
MlyI	GAGTC	1 cut(s)	773
MmeI	TCCRAC	1 cut(s)	743
MnlI	CCTC	6 cut(s)	234, 407, 480, 510, 735, 1214
MseI	TTAA	7 cut(s)	585, 680, 822, 918, 948, 1071, 1193
MspA1I	CMGCKG	2 cut(s)	1250, 1279
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	2 cut(s)	980, 1227
Mva1269I	GAATGC	1 cut(s)	1267
MvaI	CCWGG	2 cut(s)	980, 1227
MvnI	CGCG	2 cut(s)	189, 700
MwoI	GCNNNNNNNGC	5 cut(s)	22, 327, 967, 1247, 1271
NdeII	GATC	8 cut(s)	31, 206, 220, 380, 496, 907, 1109, 1309
NlaIII	CATG	4 cut(s)	248, 387, 914, 1367
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	425
NspI	RCATGY	1 cut(s)	248
PctI	GAATGC	1 cut(s)	1267
PfeI	GAWTC	5 cut(s)	156, 228, 563, 1118, 1282
PfoI	TCCNGGA	1 cut(s)	978
PinAI	ACCGGT	1 cut(s)	455
PkrI	GCNGC	6 cut(s)	337, 365, 417, 1249, 1273, 1336
PleI	GAGTC	1 cut(s)	773
PpsI	GAGTC	1 cut(s)	773
PpuMI	RGGWCCY	1 cut(s)	1182
Psp5II	RGGWCCY	1 cut(s)	1182
Psp6I	CCWGG	2 cut(s)	978, 1225
PspFI	CCCAGC	1 cut(s)	1275
PspGI	CCWGG	2 cut(s)	978, 1225
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	4 cut(s)	518, 722, 1182, 1223
PspPPI	RGGWCCY	1 cut(s)	1182
PstI	CTGCAG	2 cut(s)	155, 1339
PsuI	RGATCY	2 cut(s)	220, 1109
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SalI	GTCGAC	1 cut(s)	140
SaqAI	TTAA	7 cut(s)	585, 680, 822, 918, 948, 1071, 1193
SatI	GCNGC	6 cut(s)	336, 364, 416, 1248, 1272, 1335
Sau3AI	GATC	8 cut(s)	31, 206, 220, 380, 496, 907, 1109, 1309
Sau96I	GGNCC	4 cut(s)	518, 722, 1182, 1223
SchI	GAGTC	1 cut(s)	773
ScrFI	CCNGG	2 cut(s)	980, 1227
SduI	GDGCHC	3 cut(s)	87, 323, 972
SfaNI	GCATC	2 cut(s)	520, 1046
SfcI	CTRYAG	2 cut(s)	151, 1335
SgrAI	CRCCGGYG	1 cut(s)	455
SinI	GGWCC	2 cut(s)	722, 1182
Sse9I	AATT	5 cut(s)	591, 793, 813, 891, 1189
SsiI	CCGC	4 cut(s)	130, 698, 1250, 1279
SspMI	CTAG	2 cut(s)	80, 560
StyD4I	CCNGG	2 cut(s)	978, 1225
StyI	CCWWGG	2 cut(s)	79, 926
TaaI	ACNGT	5 cut(s)	29, 94, 425, 431, 748
TaqI	TCGA	4 cut(s)	141, 226, 317, 1121
TasI	AATT	5 cut(s)	591, 793, 813, 891, 1189
TfiI	GAWTC	5 cut(s)	156, 228, 563, 1118, 1282
Tru1I	TTAA	7 cut(s)	585, 680, 822, 918, 948, 1071, 1193
Tru9I	TTAA	7 cut(s)	585, 680, 822, 918, 948, 1071, 1193
TscAI	CASTG	5 cut(s)	97, 155, 345, 646, 1378
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	6 cut(s)	335, 363, 415, 1247, 1271, 1334
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	9 cut(s)	17, 78, 86, 163, 427, 500, 681, 824, 917
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	5 cut(s)	97, 155, 345, 646, 1378
VpaK11BI	GGWCC	2 cut(s)	722, 1182
XapI	RAATTY	2 cut(s)	813, 891
XbaI	TCTAGA	1 cut(s)	559
XceI	RCATGY	1 cut(s)	248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XmaJI	CCTAGG	1 cut(s)	79
XmiI	GTMKAC	3 cut(s)	141, 648, 847
XspI	CTAG	2 cut(s)	80, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.