Rw4G014730

F-box protein At3g07870-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
34130315 .. 34135377
5063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G014730.1

Sequence Viewer

Length: 1581 bp
ATGAAGATAACGGAGCTACAACGGCACCGTGATCCACCAGACAGACCCCAGAAACAATACAATGAAGAAGAAGCAGACCTAGGGCACGACACTGTTCATCAAAGACCCTATCTTTTGCAGTTGCCAAACCGCAGAATAGTCGACATCCACTGCAGAATCCCAATCAAGACACTCATCAAATGCAGGCGCGTATGCAAGTCTTGGCGATCTTTGTTCTCAGATCCTCGATTCACCAAAGACCTACATGCCAGAACACCCACTTGCTATTTGGTGATGGCTGCGGGTAGGTACTTCTTGCTTGACTTCAATGATACTTCGAGCCCGAACGGCGTCGCAGCACTGAAAACAACATTTCTTAGAAGCAGCGACGACTTTGTGGGATCATGCAATGGCTTCCTCTGTTTATACAAGAAGCAGCTAAACCGTCACGGTTTTTTCATATCCAATCCCATCACCGGTGAGTGTTTACCTCTTCCGAAACCGATGAAGCAAGATGATCCTCCCCCCATTTCATGTGGGCCTTCTGCTGATGCCATCACTAATAACATATTGGCTTTGCTAGAATCCACTCGTCCAAAGTCTGTTAAGGAAATTGTGTATCAATCTTGTTGTGCATTTGGGTTTGGGTTTAGTCCCATCAGTGGTGTCTACAAAGTAGTTCTCTTTACTTCTTCAAGGTTAATGGAAGCTTCATCTCCGCGTGAGTTTGTGCTTAGAAGTGGACCTCCGAAGGTGATGGTTCTGACTGTTGGTTCTGGGAGTTGGAGACATATTGGGGACTCTGTTATGTGCAATTTTGACCATCAGTCAGGAATTTATCTTAATGGATGTCTTCATTGGATAGGTCTACCCACTCAGGGTACTCGTTTTATATATGCGTTTGACATTGAAAGTGAGTGCTTCCAACAGATACATCTACCTCCTTTTACTTTGGATAACGAGATAACTAAATGTAACCTTGGAGTTGTGAACGGGTGCCTCTCTATAACTGTTCCTTCAAGTTATAATTTCACTGTTTGGGTGATGAAGGATCATGTTGTTAAGGAGCCTTGGACTAAAGAGCTTGACATTAAAGTGGATTTGCATTTAGGGTGTGGAACGGCAAGTTTGTTGTTACAGAACAGGTTGCAGGCTCATATTCCTGGAAGAAGAGGCTTTGTGGGGGTTGAGGTTGATGGGATACCATCTTCGATTGACGCTTCATATCTCTACGTTCCAAGCTTCGTTTCACTTAAAGATGTCTTTGGGGGTCATAACTCGAAGTCTGGTAGATCTGAAGAATCGAGTGTTAGAGAAGCTGGTGAGTTGCAACAACCTGCACCAAATGAGACAAAGCCCAGAAGGACCTGCAATTTAAAAGACCAATCTGTCATAAGTCAAAGAGGGCCAGGTAATGTGAAAGCTAATGCAGCGGATTATGGGAATGCTGAAGCAGCCCAGCGGAATCTTCTACATAAAGCTAATGGATTAGATCAAGGGAATGTGCAATCTAAAGCTGCAGTAGTTGAACACAAACAACAGGTAACTGTGGGCAGTTGGCATTTTGTTATCTTGCAAGCTTGGGACTTGCTTAAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

526

Amino Acids

58.64

Weight (kDa)

8.73

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 39 - 79 8.3e-06 F-box domain
FBA_3 PF08268 116 - 354 1.6e-20 F-box associated beta propeller domain
FBA_1 PF07734 126 - 361 1.4e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1005, 1579
AasI GACNNNNNNGTC 1 cut(s) 1367
Acc36I ACCTGC 2 cut(s) 1324, 1355
AccB1I GGYRCC 2 cut(s) 24, 975
AccI GTMKAC 3 cut(s) 141, 648, 847
AccII CGCG 2 cut(s) 189, 700
AciI CCGC 5 cut(s) 130, 281, 698, 1412, 1441
AclWI GGATC 5 cut(s) 26, 215, 388, 491, 1038
AcsI RAATTY 1 cut(s) 813
AcuI CTGAAG 2 cut(s) 1296, 1449
AcyI GRCGYC 1 cut(s) 330
AfaI GTAC 2 cut(s) 290, 862
AfiI CCNNNNNNNGG 3 cut(s) 455, 641, 857
AgeI ACCGGT 1 cut(s) 455
AgsI TTSAA 5 cut(s) 307, 675, 890, 999, 1508
AhdI GACNNNNNGTC 1 cut(s) 805
AjnI CCWGG 2 cut(s) 1141, 1387
AjuI GAANNNNNNNTTGG 2 cut(s) 1210, 1242
Alw26I GTCTC 2 cut(s) 760, 1322
AlwI GGATC 5 cut(s) 26, 215, 388, 491, 1038
AoxI GGCC 2 cut(s) 518, 1385
ApeKI GCWGC 7 cut(s) 278, 335, 363, 415, 1409, 1433, 1496
ApoI RAATTY 1 cut(s) 813
AsiGI ACCGGT 1 cut(s) 455
AspA2I CCTAGG 1 cut(s) 79
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 4 cut(s) 518, 722, 1344, 1385
AsuHPI GGTGA 7 cut(s) 223, 283, 445, 470, 745, 1033, 1313
AvaII GGWCC 2 cut(s) 722, 1344
AvrII CCTAGG 1 cut(s) 79
BaeGI GKGCMC 1 cut(s) 87
BanI GGYRCC 2 cut(s) 24, 975
BanII GRGCYC 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 824
BbvI GCAGC 7 cut(s) 265, 347, 375, 427, 1421, 1445, 1483
BccI CCATC 8 cut(s) 268, 458, 542, 644, 730, 810, 1169, 1192
BceAI ACGGC 3 cut(s) 38, 343, 1116
BcgI CGANNNNNNTGC 2 cut(s) 121, 155
BciT130I CCWGG 2 cut(s) 1143, 1389
BciVI GTATCC 1 cut(s) 1173
BcoDI GTCTC 2 cut(s) 760, 1322
BfaI CTAG 2 cut(s) 80, 560
BfmI CTRYAG 2 cut(s) 151, 1497
BfuAI ACCTGC 2 cut(s) 1324, 1355
BfuI GTATCC 1 cut(s) 1173
BglI GCCNNNNNGGC 1 cut(s) 327
BglII AGATCT 1 cut(s) 1271
BisI GCNGC 7 cut(s) 279, 336, 364, 416, 1410, 1434, 1497
BlnI CCTAGG 1 cut(s) 79
BlsI GCNGC 7 cut(s) 280, 337, 365, 417, 1411, 1435, 1498
Bme1390I CCNGG 2 cut(s) 1143, 1389
Bme18I GGWCC 2 cut(s) 722, 1344
BmeRI GACNNNNNGTC 1 cut(s) 805
BmgT120I GGNCC 4 cut(s) 518, 722, 1344, 1385
BmiI GGNNCC 3 cut(s) 26, 977, 1047
BmrFI CCNGG 2 cut(s) 1143, 1389
BmsI GCATC 1 cut(s) 520
BpiI GAAGAC 1 cut(s) 824
BsaHI GRCGYC 1 cut(s) 330
BsaJI CCNNGG 3 cut(s) 79, 958, 1049
BsaWI WCCGGW 1 cut(s) 455
Bsc4I CCNNNNNNNGG 3 cut(s) 455, 641, 857
Bse118I RCCGGY 1 cut(s) 455
Bse3DI GCAATG 1 cut(s) 394
BseBI CCWGG 2 cut(s) 1143, 1389
BseDI CCNNGG 3 cut(s) 79, 958, 1049
BseGI GGATG 2 cut(s) 144, 833
BseLI CCNNNNNNNGG 3 cut(s) 455, 641, 857
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 2 cut(s) 231, 869
BseSI GKGCMC 1 cut(s) 87
BseXI GCAGC 7 cut(s) 265, 347, 375, 427, 1421, 1445, 1483
BseYI CCCAGC 1 cut(s) 1437
BsgI GTGCAG 1 cut(s) 1302
Bsh1236I CGCG 2 cut(s) 189, 700
BshFI GGCC 2 cut(s) 520, 1387
BshNI GGYRCC 2 cut(s) 24, 975
BshTI ACCGGT 1 cut(s) 455
BsiSI CCGG 1 cut(s) 456
BslFI GGGAC 3 cut(s) 618, 791, 1577
BslI CCNNNNNNNGG 3 cut(s) 455, 641, 857
BsmAI GTCTC 2 cut(s) 760, 1322
BsmFI GGGAC 3 cut(s) 618, 791, 1577
BsmI GAATGC 1 cut(s) 1429
BsnI GGCC 2 cut(s) 520, 1387
Bsp1286I GDGCHC 2 cut(s) 87, 323
Bsp143I GATC 8 cut(s) 31, 206, 220, 380, 496, 1030, 1271, 1471
BspACI CCGC 5 cut(s) 130, 281, 698, 1412, 1441
BspANI GGCC 2 cut(s) 520, 1387
BspCNI CTCAG 2 cut(s) 230, 868
BspFNI CGCG 2 cut(s) 189, 700
BspLI GGNNCC 3 cut(s) 26, 977, 1047
BspMAI CTGCAG 2 cut(s) 155, 1501
BspMI ACCTGC 2 cut(s) 1324, 1355
BspPI GGATC 5 cut(s) 26, 215, 388, 491, 1038
BspT107I GGYRCC 2 cut(s) 24, 975
BsrDI GCAATG 1 cut(s) 394
BsrFI RCCGGY 1 cut(s) 455
BssAI RCCGGY 1 cut(s) 455
BssECI CCNNGG 3 cut(s) 79, 958, 1049
BssMI GATC 8 cut(s) 31, 206, 220, 380, 496, 1030, 1271, 1471
BssNI GRCGYC 1 cut(s) 330
BssT1I CCWWGG 3 cut(s) 79, 958, 1049
Bst2UI CCWGG 2 cut(s) 1143, 1389
Bst4CI ACNGT 8 cut(s) 29, 94, 425, 431, 748, 991, 1015, 1528
Bst6I CTCTTC 2 cut(s) 477, 1144
BstACI GRCGYC 1 cut(s) 330
BstC8I GCNNGC 3 cut(s) 185, 1131, 1557
BstDEI CTNAG 4 cut(s) 217, 356, 713, 855
BstF5I GGATG 2 cut(s) 144, 833
BstFNI CGCG 2 cut(s) 189, 700
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 8 cut(s) 34, 209, 223, 383, 499, 1033, 1274, 1474
BstMAI GTCTC 2 cut(s) 760, 1322
BstMBI GATC 8 cut(s) 31, 206, 220, 380, 496, 1030, 1271, 1471
BstMWI GCNNNNNNNGC 4 cut(s) 22, 327, 1409, 1433
BstNI CCWGG 2 cut(s) 1143, 1389
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 2 cut(s) 1141, 1387
BstSFI CTRYAG 2 cut(s) 151, 1497
BstSLI GKGCMC 1 cut(s) 87
BstUI CGCG 2 cut(s) 189, 700
BstV1I GCAGC 7 cut(s) 265, 347, 375, 427, 1421, 1445, 1483
BstV2I GAAGAC 1 cut(s) 824
BstX2I RGATCY 2 cut(s) 220, 1271
BstYI RGATCY 2 cut(s) 220, 1271
BsuI GTATCC 1 cut(s) 1173
BsuRI GGCC 2 cut(s) 520, 1387
BtsCI GGATG 2 cut(s) 144, 833
BtsI GCAGTG 1 cut(s) 148
BtsIMutI CAGTG 5 cut(s) 90, 148, 338, 646, 1011
BveI ACCTGC 2 cut(s) 1324, 1355
Cac8I GCNNGC 3 cut(s) 185, 1131, 1557
CfoI GCGC 1 cut(s) 189
Cfr10I RCCGGY 1 cut(s) 455
Cfr13I GGNCC 4 cut(s) 518, 722, 1344, 1385
CseI GACGC 2 cut(s) 319, 1205
Csp6I GTAC 2 cut(s) 289, 861
CspAI ACCGGT 1 cut(s) 455
CviAII CATG 4 cut(s) 245, 384, 513, 1034
CviQI GTAC 2 cut(s) 289, 861
DdeI CTNAG 4 cut(s) 217, 356, 713, 855
DpnI GATC 8 cut(s) 33, 208, 222, 382, 498, 1032, 1273, 1473
DpnII GATC 8 cut(s) 31, 206, 220, 380, 496, 1030, 1271, 1471
DraI TTTAAA 1 cut(s) 1356
DrdI GACNNNNNNGTC 1 cut(s) 1367
DriI GACNNNNNGTC 1 cut(s) 805
DseDI GACNNNNNNGTC 1 cut(s) 1367
Eam1104I CTCTTC 2 cut(s) 477, 1144
Eam1105I GACNNNNNGTC 1 cut(s) 805
EarI CTCTTC 2 cut(s) 477, 1144
Eco130I CCWWGG 3 cut(s) 79, 958, 1049
Eco24I GRGCYC 1 cut(s) 323
Eco47I GGWCC 2 cut(s) 722, 1344
Eco57I CTGAAG 2 cut(s) 1296, 1449
EcoO109I RGGNCCY 1 cut(s) 1344
EcoRII CCWGG 2 cut(s) 1141, 1387
EcoT14I CCWWGG 3 cut(s) 79, 958, 1049
EcoT38I GRGCYC 1 cut(s) 323
ErhI CCWWGG 3 cut(s) 79, 958, 1049
FaeI CATG 4 cut(s) 248, 387, 516, 1037
FaqI GGGAC 3 cut(s) 618, 791, 1577
FatI CATG 4 cut(s) 244, 383, 512, 1033
FauI CCCGC 1 cut(s) 274
FblI GTMKAC 3 cut(s) 141, 648, 847
Fnu4HI GCNGC 7 cut(s) 279, 336, 364, 416, 1410, 1434, 1497
FokI GGATG 2 cut(s) 131, 840
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 7 cut(s) 279, 336, 364, 416, 1410, 1434, 1497
FspBI CTAG 2 cut(s) 80, 560
GlaI GCGC 1 cut(s) 188
GluI GCNGC 7 cut(s) 279, 336, 364, 416, 1410, 1434, 1497
GsaI CCCAGC 1 cut(s) 1441
HaeIII GGCC 2 cut(s) 520, 1387
HapII CCGG 1 cut(s) 456
HgaI GACGC 2 cut(s) 319, 1205
HhaI GCGC 1 cut(s) 189
Hin1I GRCGYC 1 cut(s) 330
Hin1II CATG 4 cut(s) 248, 387, 516, 1037
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 3 cut(s) 687, 1219, 1557
HinfI GANTC 6 cut(s) 156, 228, 563, 779, 1280, 1444
HpaII CCGG 1 cut(s) 456
HphI GGTGA 7 cut(s) 223, 283, 445, 470, 745, 1033, 1313
Hpy166II GTNNAC 6 cut(s) 142, 467, 649, 722, 848, 970
Hpy188I TCNGA 5 cut(s) 220, 477, 729, 744, 1276
Hpy188III TCNNGA 2 cut(s) 166, 810
Hpy8I GTNNAC 6 cut(s) 142, 467, 649, 722, 848, 970
Hpy99I CGWCG 2 cut(s) 335, 371
HpyAV CCTTC 5 cut(s) 531, 724, 1005, 1021, 1335
HpyCH4III ACNGT 8 cut(s) 29, 94, 425, 431, 748, 991, 1015, 1528
HpyCH4IV ACGT 1 cut(s) 1212
HpyF10VI GCNNNNNNNGC 4 cut(s) 22, 327, 1409, 1433
HpyF3I CTNAG 4 cut(s) 217, 356, 713, 855
HpySE526I ACGT 1 cut(s) 1212
Hsp92I GRCGYC 1 cut(s) 330
Hsp92II CATG 4 cut(s) 248, 387, 516, 1037
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 8 cut(s) 31, 206, 220, 380, 496, 1030, 1271, 1471
LmnI GCTCC 2 cut(s) 13, 1045
Lsp1109I GCAGC 7 cut(s) 265, 347, 375, 427, 1421, 1445, 1483
LweI GCATC 1 cut(s) 520
MaeI CTAG 2 cut(s) 80, 560
MaeII ACGT 1 cut(s) 1212
MaeIII GTNAC 4 cut(s) 425, 953, 1113, 1522
MalI GATC 8 cut(s) 33, 208, 222, 382, 498, 1032, 1273, 1473
MboI GATC 8 cut(s) 31, 206, 220, 380, 496, 1030, 1271, 1471
MflI RGATCY 2 cut(s) 220, 1271
MhlI GDGCHC 2 cut(s) 87, 323
MluCI AATT 6 cut(s) 591, 793, 813, 1006, 1351, 1574
MlyI GAGTC 1 cut(s) 773
MmeI TCCRAC 2 cut(s) 743, 928
MseI TTAA 8 cut(s) 585, 680, 822, 1041, 1071, 1233, 1355, 1572
MslI CAYNNNNRTG 1 cut(s) 1073
MspA1I CMGCKG 2 cut(s) 1412, 1441
MspI CCGG 1 cut(s) 456
MspR9I CCNGG 2 cut(s) 1143, 1389
Mva1269I GAATGC 1 cut(s) 1429
MvaI CCWGG 2 cut(s) 1143, 1389
MvnI CGCG 2 cut(s) 189, 700
MwoI GCNNNNNNNGC 4 cut(s) 22, 327, 1409, 1433
NdeII GATC 8 cut(s) 31, 206, 220, 380, 496, 1030, 1271, 1471
NlaIII CATG 4 cut(s) 248, 387, 516, 1037
NlaIV GGNNCC 3 cut(s) 26, 977, 1047
NmuCI GTSAC 1 cut(s) 425
NspI RCATGY 1 cut(s) 248
PctI GAATGC 1 cut(s) 1429
PfeI GAWTC 5 cut(s) 156, 228, 563, 1280, 1444
PfoI TCCNGGA 1 cut(s) 1141
PinAI ACCGGT 1 cut(s) 455
PkrI GCNGC 7 cut(s) 280, 337, 365, 417, 1411, 1435, 1498
PleI GAGTC 1 cut(s) 773
PpsI GAGTC 1 cut(s) 773
PpuMI RGGWCCY 1 cut(s) 1344
PsiI TTATAA 2 cut(s) 1005, 1579
Psp5II RGGWCCY 1 cut(s) 1344
Psp6I CCWGG 2 cut(s) 1141, 1387
PspFI CCCAGC 1 cut(s) 1437
PspGI CCWGG 2 cut(s) 1141, 1387
PspN4I GGNNCC 3 cut(s) 26, 977, 1047
PspPI GGNCC 4 cut(s) 518, 722, 1344, 1385
PspPPI RGGWCCY 1 cut(s) 1344
PstI CTGCAG 2 cut(s) 155, 1501
PsuI RGATCY 2 cut(s) 220, 1271
RsaI GTAC 2 cut(s) 290, 862
RsaNI GTAC 2 cut(s) 289, 861
RseI CAYNNNNRTG 1 cut(s) 1073
SalI GTCGAC 1 cut(s) 140
SaqAI TTAA 8 cut(s) 585, 680, 822, 1041, 1071, 1233, 1355, 1572
SatI GCNGC 7 cut(s) 279, 336, 364, 416, 1410, 1434, 1497
Sau3AI GATC 8 cut(s) 31, 206, 220, 380, 496, 1030, 1271, 1471
Sau96I GGNCC 4 cut(s) 518, 722, 1344, 1385
SchI GAGTC 1 cut(s) 773
ScrFI CCNGG 2 cut(s) 1143, 1389
SduI GDGCHC 2 cut(s) 87, 323
SfaNI GCATC 1 cut(s) 520
SfcI CTRYAG 2 cut(s) 151, 1497
SgrAI CRCCGGYG 1 cut(s) 455
SinI GGWCC 2 cut(s) 722, 1344
SmiMI CAYNNNNRTG 1 cut(s) 1073
Sse9I AATT 6 cut(s) 591, 793, 813, 1006, 1351, 1574
SsiI CCGC 5 cut(s) 130, 281, 698, 1412, 1441
SspMI CTAG 2 cut(s) 80, 560
StyD4I CCNGG 2 cut(s) 1141, 1387
StyI CCWWGG 3 cut(s) 79, 958, 1049
TaaI ACNGT 8 cut(s) 29, 94, 425, 431, 748, 991, 1015, 1528
TaiI ACGT 1 cut(s) 1215
TaqI TCGA 6 cut(s) 141, 226, 317, 1190, 1259, 1283
TasI AATT 6 cut(s) 591, 793, 813, 1006, 1351, 1574
TfiI GAWTC 5 cut(s) 156, 228, 563, 1280, 1444
Tru1I TTAA 8 cut(s) 585, 680, 822, 1041, 1071, 1233, 1355, 1572
Tru9I TTAA 8 cut(s) 585, 680, 822, 1041, 1071, 1233, 1355, 1572
TscAI CASTG 5 cut(s) 97, 155, 345, 646, 1018
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 7 cut(s) 278, 335, 363, 415, 1409, 1433, 1496
Tsp45I GTSAC 1 cut(s) 425
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 5 cut(s) 97, 155, 345, 646, 1018
VpaK11BI GGWCC 2 cut(s) 722, 1344
XapI RAATTY 1 cut(s) 813
XceI RCATGY 1 cut(s) 248
XcmI CCANNNNNNNNNTGG 1 cut(s) 265
XmaJI CCTAGG 1 cut(s) 79
XmiI GTMKAC 3 cut(s) 141, 648, 847
XspI CTAG 2 cut(s) 80, 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.