Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0013654

Physical Location & Seq

Genomic Coordinates Reverse (-)

31215360 .. 31230399

Gene Structure 15040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG175400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAAGATAACGGTGCTACAACGGCACCTTGATCCACCAGACAGACCCCAGAAACAATACGATGAAGAAGAAGCAGACCTAGGGCACGACACTATTCATCAGAGACCCTATCTTTTGCAGTTGCCAAACAGCAGAATAGTCGACATCCACTACAGAATCCCAATCAAGACACTCATCAAATGCAGGCGCGAACGGCAAGTCTTGTTGTTACAGAACAGGTTGCAGGCTCATATTCCTGGAAGAAGAGGCTTTGTGGGGGTTGAGGTTGATGGGATACCATCTTCGATTGACGCTTCATATCTCTACGTTCCAAGCTTCGTTTCACTTAAAGATGTCTTTGGGGGTCATAACTCGAAGGAGAAAAGAGGACCCAAGAAGGCACAAACAACACATAATGACAAAGAAGAAGCAGAGCAATTGCACGGCATTGATAAGACACCCTACCTTCTGCAATTGCCAAACCGCGTCATAGTTGACATCCACTGTAAAATCCCAATTAAGACACTCATCAAATGCAGGCGAGTATGCAAGTCTTGGCGATCTTTGTTCTCAGATCCTCGATTCACCAAAGACCTATTTGCCAGAACACCCGCTTGCCATTTGGTGATAGCTTCGTGTAGGTACTTCTTGCTCGACTTCAACGATGCTTCGAGCCCAAACGGTGTGGCAGCACTGAAAACGACATTTCATAGAAGCAGCGAAGACATTGTGCGATCATGTAATGGCTTCCTCTGCTTGTACAAGAAGGAGCTAAACCGTCACGGATTTTACATATCCAATCCCATTACATGTGAGTCTTTACCTCTTCCAAAACCTATCAAGCAAGATGATCCTCCTCCCATTTCTTGTGGGCCTTCTGCTGATGCCATCACTAATAACATATTGGCTTTTCTAGAATCCACTCGTCCAAAGTCTGTTAAGGAAATTGTGTATCAATCTTGTTGTGCATTTGGGTTTGGGTTTAGTCCCATCAGTGGTGTCTACAAAGTAGTTCTCTTTACTTCTACAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

337

Amino Acids

38.24

Weight (kDa)

9.24

Isoelectric Point (pI)

53.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	149 - 190	2.4e-08	F-box domain
F-box-like	PF12937	150 - 193	2.3e-07	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13040 FvH4_4g13060
malus_domestica	MD04G1020200.v1.1
rosa_chinensis	RchiOBHm_Chr4g0412781 RchiOBHm_Chr4g0412791
rosa_laevigata	RLG00000008259
rosa_multiflora	Rmu_sc0001238.1_g000047 Rmu_sc0001569.1_g000012 Rmu_sc0041034.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357040
rosa_rugosa	Rorug04G0116800
rosa_samantha	Rh4AG175500 Rh4BG175300 Rh4BG175400 Rh4CG186700 Rh4DG172300 Rh6CG426300
rosa_wichuraiana	Rw4G014730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	24
AccI	GTMKAC	2 cut(s)	141, 981
AccII	CGCG	2 cut(s)	189, 465
AciI	CCGC	2 cut(s)	463, 591
AclWI	GGATC	3 cut(s)	26, 548, 824
AfaI	GTAC	2 cut(s)	623, 740
AfiI	CCNNNNNNNGG	1 cut(s)	974
AflIII	ACRYGT	1 cut(s)	788
AgsI	TTSAA	1 cut(s)	640
AjnI	CCWGG	1 cut(s)	235
AjuI	GAANNNNNNNTTGG	2 cut(s)	304, 336
AluBI	AGCT	3 cut(s)	315, 611, 751
AluI	AGCT	3 cut(s)	315, 611, 751
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	3 cut(s)	26, 548, 824
AoxI	GGCC	1 cut(s)	851
ApeKI	GCWGC	2 cut(s)	668, 696
ArsI	GACNNNNNNTTYG	2 cut(s)	183, 215
AspA2I	CCTAGG	1 cut(s)	79
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	2 cut(s)	368, 851
AsuHPI	GGTGA	2 cut(s)	556, 616
AvaII	GGWCC	1 cut(s)	368
AvrII	CCTAGG	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	656
BbsI	GAAGAC	1 cut(s)	708
BbvI	GCAGC	2 cut(s)	680, 708
BccI	CCATC	4 cut(s)	263, 286, 875, 977
BceAI	ACGGC	3 cut(s)	38, 209, 439
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BciT130I	CCWGG	1 cut(s)	237
BciVI	GTATCC	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	97
BfaI	CTAG	2 cut(s)	80, 893
BfmI	CTRYAG	1 cut(s)	151
BfuI	GTATCC	1 cut(s)	267
BisI	GCNGC	2 cut(s)	669, 697
BlnI	CCTAGG	1 cut(s)	79
BlsI	GCNGC	2 cut(s)	670, 698
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	368
BmgT120I	GGNCC	2 cut(s)	368, 851
BmiI	GGNNCC	2 cut(s)	26, 370
BmrFI	CCNGG	1 cut(s)	237
BmsI	GCATC	2 cut(s)	634, 853
BpiI	GAAGAC	1 cut(s)	708
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	1 cut(s)	974
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	2 cut(s)	144, 477
BseLI	CCNNNNNNNGG	1 cut(s)	974
BseMII	CTCAG	1 cut(s)	564
BseRI	GAGGAG	1 cut(s)	825
BseSI	GKGCMC	1 cut(s)	87
BseXI	GCAGC	2 cut(s)	680, 708
Bsh1236I	CGCG	2 cut(s)	189, 465
BshFI	GGCC	1 cut(s)	853
BshNI	GGYRCC	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	951
BslI	CCNNNNNNNGG	1 cut(s)	974
BsmAI	GTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	951
BsnI	GGCC	1 cut(s)	853
Bso31I	GGTCTC	1 cut(s)	97
Bsp1286I	GDGCHC	2 cut(s)	87, 656
Bsp1407I	TGTACA	1 cut(s)	738
Bsp143I	GATC	5 cut(s)	31, 539, 553, 713, 829
BspACI	CCGC	2 cut(s)	463, 591
BspANI	GGCC	1 cut(s)	853
BspCNI	CTCAG	1 cut(s)	563
BspFNI	CGCG	2 cut(s)	189, 465
BspLI	GGNNCC	2 cut(s)	26, 370
BspPI	GGATC	3 cut(s)	26, 548, 824
BspT107I	GGYRCC	1 cut(s)	24
BspTNI	GGTCTC	1 cut(s)	97
BsrGI	TGTACA	1 cut(s)	738
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	5 cut(s)	31, 539, 553, 713, 829
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	4 cut(s)	13, 485, 662, 758
Bst6I	CTCTTC	2 cut(s)	238, 810
BstAUI	TGTACA	1 cut(s)	738
BstC8I	GCNNGC	4 cut(s)	185, 225, 518, 595
BstDEI	CTNAG	1 cut(s)	550
BstF5I	GGATG	2 cut(s)	144, 477
BstFNI	CGCG	2 cut(s)	189, 465
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	5 cut(s)	34, 542, 556, 716, 832
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	5 cut(s)	31, 539, 553, 713, 829
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 193, 732
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	792
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	1 cut(s)	151
BstSLI	GKGCMC	1 cut(s)	87
BstUI	CGCG	2 cut(s)	189, 465
BstV1I	GCAGC	2 cut(s)	680, 708
BstV2I	GAAGAC	1 cut(s)	708
BstX2I	RGATCY	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	553
BsuI	GTATCC	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	853
BtsCI	GGATG	2 cut(s)	144, 477
BtsIMutI	CAGTG	3 cut(s)	481, 671, 979
Cac8I	GCNNGC	4 cut(s)	185, 225, 518, 595
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	2 cut(s)	368, 851
CseI	GACGC	2 cut(s)	299, 454
Csp6I	GTAC	2 cut(s)	622, 739
CspCI	CAANNNNNGTGG	2 cut(s)	645, 680
CviAII	CATG	2 cut(s)	717, 789
CviJI	RGCY	9 cut(s)	227, 249, 315, 611, 654, 726, 751, 853, 887
CviKI_1	RGCY	9 cut(s)	227, 249, 315, 611, 654, 726, 751, 853, 887
CviQI	GTAC	2 cut(s)	622, 739
DdeI	CTNAG	1 cut(s)	550
DpnI	GATC	5 cut(s)	33, 541, 555, 715, 831
DpnII	GATC	5 cut(s)	31, 539, 553, 713, 829
Eam1104I	CTCTTC	2 cut(s)	238, 810
EarI	CTCTTC	2 cut(s)	238, 810
Eco130I	CCWWGG	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	656
Eco31I	GGTCTC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	368
EcoO109I	RGGNCCY	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	656
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	2 cut(s)	720, 792
FaqI	GGGAC	1 cut(s)	951
FatI	CATG	2 cut(s)	716, 788
FauI	CCCGC	1 cut(s)	598
FblI	GTMKAC	2 cut(s)	141, 981
Fnu4HI	GCNGC	2 cut(s)	669, 697
FokI	GGATG	2 cut(s)	131, 464
FriOI	GRGCYC	1 cut(s)	656
Fsp4HI	GCNGC	2 cut(s)	669, 697
FspBI	CTAG	2 cut(s)	80, 893
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	2 cut(s)	669, 697
HaeIII	GGCC	1 cut(s)	853
HgaI	GACGC	2 cut(s)	299, 454
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	2 cut(s)	720, 792
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HincII	GTYRAC	2 cut(s)	142, 475
HindII	GTYRAC	2 cut(s)	142, 475
HindIII	AAGCTT	1 cut(s)	313
HinfI	GANTC	4 cut(s)	156, 561, 794, 896
HphI	GGTGA	2 cut(s)	556, 616
Hpy166II	GTNNAC	3 cut(s)	142, 475, 982
Hpy188I	TCNGA	2 cut(s)	102, 553
Hpy188III	TCNNGA	2 cut(s)	166, 893
Hpy8I	GTNNAC	3 cut(s)	142, 475, 982
HpyAV	CCTTC	5 cut(s)	349, 370, 455, 739, 864
HpyCH4III	ACNGT	4 cut(s)	13, 485, 662, 758
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	8 cut(s)	118, 183, 223, 421, 451, 516, 528, 947
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 193, 732
HpyF3I	CTNAG	1 cut(s)	550
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	2 cut(s)	720, 792
HspAI	GCGC	1 cut(s)	187
Kzo9I	GATC	5 cut(s)	31, 539, 553, 713, 829
LmnI	GCTCC	1 cut(s)	748
LpnPI	CCDG	9 cut(s)	51, 62, 169, 202, 209, 222, 249, 502, 595
Lsp1109I	GCAGC	2 cut(s)	680, 708
LweI	GCATC	2 cut(s)	634, 853
MaeI	CTAG	2 cut(s)	80, 893
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	207, 758
MalI	GATC	5 cut(s)	33, 541, 555, 715, 831
MboI	GATC	5 cut(s)	31, 539, 553, 713, 829
MboII	GAAGA	9 cut(s)	16, 77, 80, 252, 255, 273, 416, 713, 797
MfeI	CAATTG	2 cut(s)	416, 452
MflI	RGATCY	1 cut(s)	553
MhlI	GDGCHC	2 cut(s)	87, 656
MluCI	AATT	4 cut(s)	416, 452, 495, 924
MlyI	GAGTC	1 cut(s)	803
MnlI	CCTC	8 cut(s)	239, 256, 359, 567, 740, 813, 843, 846
MseI	TTAA	3 cut(s)	327, 498, 918
MspR9I	CCNGG	1 cut(s)	237
MunI	CAATTG	2 cut(s)	416, 452
MvaI	CCWGG	1 cut(s)	237
MvnI	CGCG	2 cut(s)	189, 465
MwoI	GCNNNNNNNGC	3 cut(s)	22, 193, 732
NdeII	GATC	5 cut(s)	31, 539, 553, 713, 829
NlaIII	CATG	2 cut(s)	720, 792
NlaIV	GGNNCC	2 cut(s)	26, 370
NmuCI	GTSAC	1 cut(s)	758
NspI	RCATGY	1 cut(s)	792
PciI	ACATGT	1 cut(s)	788
PcsI	WCGNNNNNNNCGW	1 cut(s)	639
PfeI	GAWTC	3 cut(s)	156, 561, 896
PfoI	TCCNGGA	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	670, 698
PleI	GAGTC	1 cut(s)	802
PpsI	GAGTC	1 cut(s)	802
PpuMI	RGGWCCY	1 cut(s)	368
PscI	ACATGT	1 cut(s)	788
Psp5II	RGGWCCY	1 cut(s)	368
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	2 cut(s)	26, 370
PspPI	GGNCC	2 cut(s)	368, 851
PspPPI	RGGWCCY	1 cut(s)	368
PsuI	RGATCY	1 cut(s)	553
RsaI	GTAC	2 cut(s)	623, 740
RsaNI	GTAC	2 cut(s)	622, 739
SalI	GTCGAC	1 cut(s)	140
SaqAI	TTAA	3 cut(s)	327, 498, 918
SatI	GCNGC	2 cut(s)	669, 697
Sau3AI	GATC	5 cut(s)	31, 539, 553, 713, 829
Sau96I	GGNCC	2 cut(s)	368, 851
SchI	GAGTC	1 cut(s)	803
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	2 cut(s)	87, 656
SfaNI	GCATC	2 cut(s)	634, 853
SfcI	CTRYAG	1 cut(s)	151
SinI	GGWCC	1 cut(s)	368
Sse9I	AATT	4 cut(s)	416, 452, 495, 924
SsiI	CCGC	2 cut(s)	463, 591
SspMI	CTAG	2 cut(s)	80, 893
StyD4I	CCNGG	1 cut(s)	235
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	4 cut(s)	13, 485, 662, 758
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	6 cut(s)	141, 284, 353, 559, 633, 650
TasI	AATT	4 cut(s)	416, 452, 495, 924
TatI	WGTACW	1 cut(s)	738
TfiI	GAWTC	3 cut(s)	156, 561, 896
Tru1I	TTAA	3 cut(s)	327, 498, 918
Tru9I	TTAA	3 cut(s)	327, 498, 918
TscAI	CASTG	3 cut(s)	488, 678, 979
TseFI	GTSAC	1 cut(s)	758
TseI	GCWGC	2 cut(s)	668, 696
Tsp45I	GTSAC	1 cut(s)	758
TspDTI	ATGAA	5 cut(s)	17, 78, 86, 285, 677
TspGWI	ACGGA	1 cut(s)	777
TspRI	CASTG	3 cut(s)	488, 678, 979
VpaK11BI	GGWCC	1 cut(s)	368
XbaI	TCTAGA	1 cut(s)	892
XceI	RCATGY	1 cut(s)	792
XmaJI	CCTAGG	1 cut(s)	79
XmiI	GTMKAC	2 cut(s)	141, 981
XspI	CTAG	2 cut(s)	80, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.