Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013654

Physical Location & Seq

Genomic Coordinates Reverse (-)

36754804 .. 36756048

Gene Structure 1245 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38342

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGAAGATAACGGAGCTACAACGGCACCGAGATCCACCAGACAGGCCCCAGAAACAATACAATGAAGAAGAAGCAGACCTAGGGCACGACACTGTTCATCAAAGACCCTATCTTTTGCAGTTGCCAAACCGCAGAATAGTCGACATCCACTGCAGAATCCCAATCAAGACATTCATCAAATGCAGGCGCGTATGCAAGTCTTGGCGATCTTTGTTCTCAGATCCTCGATTCACCAAAGATCTACATGCCAGAACACCCACTTGCTATTTGGTGATGGCTTCGGGTAGGTACTTCTTGCTTGACTTCAATGATACTTCGAGCCCGAACGGCGTCGCAGCACTGTGTTTTCAATTTCTTAGAAGCAGCGACGACTTTGTGGGATCATGCAATGGCTTCCTCTGTTTATACAAGAAGCAGCTAAACCGTCACGGTTTTTTCATATCCAATCCCATCACCGGGGAGTGTTTACCTCTTCCGAAACCGATGAAGCAAGATGATCCTCCCCCCATTTCCTGTGGGCCTTCTGCTGATGCCATCACTAATAACATATTGGCTTTTCTAGAATCCACTCGTCCAAAGTCTGTTAAGGAAATTGTGTATCAATCTTGTTGTGCATTTGGGTTTGGGTTTGGGTTTAGTCACATCAGTGGTGTCTACGAAAAGTGGACCTCCGAAGGTGATGGTTCTGACTGTTGGTTCTGGGAGTTGGAGACATATTGGGGACTCTCTGTTATGTGCAATTTTGACCATCAGTCAGGAATTTATCTTAATGGATGTCTTCATTGGATAGGTCTACCCACTCAGGGTACTCGTTTTATATATGTGTTTGACATTGAAAGTGAGTGCTTCCAACATATACATCTACCTCCTTTTACTTTGGATAACGAGATAACTAAATGTAACCTTGGAGTTGTGAACGGGTGCCTCTCTATAACTGTTCCTTCAAGTTATAATTTCACTGTTTGGGTGATGAAGGATCATGGTGTTAAGGAGCCTTGGACTAAAGAGCTTGACATTAAAGTGGATTTGCATTTAGGGTGTGGTTCTTCTACTCAAGTTTTGAATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

356

Amino Acids

40.62

Weight (kDa)

6.49

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	127 - 343	1.7e-08	F-box associated beta propeller domain
FBA_3	PF08268	250 - 336	2.4e-07	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13040 FvH4_4g13060
malus_domestica	MD04G1020200.v1.1
rosa_chinensis	RchiOBHm_Chr4g0412781 RchiOBHm_Chr4g0412791
rosa_laevigata	RLG00000008259
rosa_multiflora	Rmu_sc0001238.1_g000047 Rmu_sc0001569.1_g000012 Rmu_sc0041034.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357040
rosa_rugosa	Rorug04G0116800
rosa_samantha	Rh4AG175500 Rh4BG175300 Rh4BG175400 Rh4CG186700 Rh4DG172300 Rh6CG426300
rosa_wichuraiana	Rw4G014730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	951
AccB1I	GGYRCC	2 cut(s)	24, 921
AccI	GTMKAC	3 cut(s)	141, 654, 793
AccII	CGCG	1 cut(s)	189
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	5 cut(s)	26, 215, 388, 491, 984
AcsI	RAATTY	2 cut(s)	759, 1063
AcyI	GRCGYC	1 cut(s)	330
AfaI	GTAC	2 cut(s)	290, 808
AfiI	CCNNNNNNNGG	3 cut(s)	455, 456, 803
AgsI	TTSAA	5 cut(s)	307, 350, 836, 945, 1063
AhdI	GACNNNNNGTC	1 cut(s)	751
AleI	CACNNNNGTG	1 cut(s)	645
AluBI	AGCT	3 cut(s)	16, 418, 1009
AluI	AGCT	3 cut(s)	16, 418, 1009
Alw26I	GTCTC	1 cut(s)	704
AlwI	GGATC	5 cut(s)	26, 215, 388, 491, 984
AoxI	GGCC	2 cut(s)	44, 518
ApeKI	GCWGC	3 cut(s)	335, 363, 415
ApoI	RAATTY	2 cut(s)	759, 1063
AspA2I	CCTAGG	1 cut(s)	79
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	3 cut(s)	45, 518, 666
AsuC2I	CCSGG	1 cut(s)	457
AsuHPI	GGTGA	5 cut(s)	223, 283, 445, 689, 979
AvaII	GGWCC	1 cut(s)	666
AvrII	CCTAGG	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	87
BanI	GGYRCC	2 cut(s)	24, 921
BanII	GRGCYC	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	770
BbvI	GCAGC	3 cut(s)	347, 375, 427
BccI	CCATC	5 cut(s)	268, 458, 542, 674, 756
BceAI	ACGGC	2 cut(s)	38, 343
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BcnI	CCSGG	1 cut(s)	457
BcoDI	GTCTC	1 cut(s)	704
BfaI	CTAG	2 cut(s)	80, 560
BfmI	CTRYAG	1 cut(s)	151
BglI	GCCNNNNNGGC	1 cut(s)	327
BglII	AGATCT	1 cut(s)	238
BisI	GCNGC	3 cut(s)	336, 364, 416
BlnI	CCTAGG	1 cut(s)	79
BlsI	GCNGC	3 cut(s)	337, 365, 417
Bme1390I	CCNGG	1 cut(s)	457
Bme18I	GGWCC	1 cut(s)	666
BmeRI	GACNNNNNGTC	1 cut(s)	751
BmgT120I	GGNCC	3 cut(s)	45, 518, 666
BmiI	GGNNCC	4 cut(s)	26, 47, 923, 993
BmrFI	CCNGG	1 cut(s)	457
BmsI	GCATC	1 cut(s)	520
BpiI	GAAGAC	1 cut(s)	770
BpuEI	CTTGAG	1 cut(s)	1038
BpuMI	CCSGG	1 cut(s)	457
BsaHI	GRCGYC	1 cut(s)	330
BsaJI	CCNNGG	4 cut(s)	79, 456, 904, 995
Bsc4I	CCNNNNNNNGG	3 cut(s)	455, 456, 803
Bse3DI	GCAATG	1 cut(s)	394
BseDI	CCNNGG	4 cut(s)	79, 456, 904, 995
BseGI	GGATG	2 cut(s)	144, 779
BseLI	CCNNNNNNNGG	3 cut(s)	455, 456, 803
BseMI	GCAATG	1 cut(s)	394
BseMII	CTCAG	2 cut(s)	231, 815
BseSI	GKGCMC	1 cut(s)	87
BseXI	GCAGC	3 cut(s)	347, 375, 427
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	2 cut(s)	46, 520
BshNI	GGYRCC	2 cut(s)	24, 921
BsiSI	CCGG	1 cut(s)	456
BslFI	GGGAC	1 cut(s)	735
BslI	CCNNNNNNNGG	3 cut(s)	455, 456, 803
BsmAI	GTCTC	1 cut(s)	704
BsmFI	GGGAC	1 cut(s)	735
BsnI	GGCC	2 cut(s)	46, 520
Bsp1286I	GDGCHC	2 cut(s)	87, 323
Bsp143I	GATC	7 cut(s)	31, 206, 220, 238, 380, 496, 976
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	2 cut(s)	46, 520
BspCNI	CTCAG	2 cut(s)	230, 814
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	4 cut(s)	26, 47, 923, 993
BspMAI	CTGCAG	1 cut(s)	155
BspPI	GGATC	5 cut(s)	26, 215, 388, 491, 984
BspT107I	GGYRCC	2 cut(s)	24, 921
BsrDI	GCAATG	1 cut(s)	394
BssECI	CCNNGG	4 cut(s)	79, 456, 904, 995
BssMI	GATC	7 cut(s)	31, 206, 220, 238, 380, 496, 976
BssNI	GRCGYC	1 cut(s)	330
BssT1I	CCWWGG	3 cut(s)	79, 904, 995
Bst4CI	ACNGT	7 cut(s)	94, 342, 425, 431, 692, 937, 961
Bst6I	CTCTTC	1 cut(s)	477
BstACI	GRCGYC	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	3 cut(s)	217, 356, 801
BstF5I	GGATG	2 cut(s)	144, 779
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	7 cut(s)	34, 209, 223, 241, 383, 499, 979
BstMAI	GTCTC	1 cut(s)	704
BstMBI	GATC	7 cut(s)	31, 206, 220, 238, 380, 496, 976
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 327
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	455
BstSFI	CTRYAG	1 cut(s)	151
BstSLI	GKGCMC	1 cut(s)	87
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	3 cut(s)	347, 375, 427
BstV2I	GAAGAC	1 cut(s)	770
BstX2I	RGATCY	3 cut(s)	31, 220, 238
BstYI	RGATCY	3 cut(s)	31, 220, 238
BsuRI	GGCC	2 cut(s)	46, 520
BtsCI	GGATG	2 cut(s)	144, 779
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	5 cut(s)	90, 148, 338, 652, 957
Cac8I	GCNNGC	1 cut(s)	185
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	3 cut(s)	45, 518, 666
CseI	GACGC	1 cut(s)	319
Csp6I	GTAC	2 cut(s)	289, 807
CviAII	CATG	3 cut(s)	245, 384, 980
CviQI	GTAC	2 cut(s)	289, 807
DdeI	CTNAG	3 cut(s)	217, 356, 801
DpnI	GATC	7 cut(s)	33, 208, 222, 240, 382, 498, 978
DpnII	GATC	7 cut(s)	31, 206, 220, 238, 380, 496, 976
DriI	GACNNNNNGTC	1 cut(s)	751
Eam1104I	CTCTTC	1 cut(s)	477
Eam1105I	GACNNNNNGTC	1 cut(s)	751
EarI	CTCTTC	1 cut(s)	477
Eco130I	CCWWGG	3 cut(s)	79, 904, 995
Eco24I	GRGCYC	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	666
EcoO109I	RGGNCCY	1 cut(s)	45
EcoRI	GAATTC	1 cut(s)	1063
EcoT14I	CCWWGG	3 cut(s)	79, 904, 995
EcoT38I	GRGCYC	1 cut(s)	323
ErhI	CCWWGG	3 cut(s)	79, 904, 995
FaeI	CATG	3 cut(s)	248, 387, 983
FaqI	GGGAC	1 cut(s)	735
FatI	CATG	3 cut(s)	244, 383, 979
FblI	GTMKAC	3 cut(s)	141, 654, 793
Fnu4HI	GCNGC	3 cut(s)	336, 364, 416
FokI	GGATG	2 cut(s)	131, 786
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	3 cut(s)	336, 364, 416
FspBI	CTAG	2 cut(s)	80, 560
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	3 cut(s)	336, 364, 416
HaeIII	GGCC	2 cut(s)	46, 520
HapII	CCGG	1 cut(s)	456
HgaI	GACGC	1 cut(s)	319
HhaI	GCGC	1 cut(s)	189
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	3 cut(s)	248, 387, 983
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	4 cut(s)	156, 228, 563, 723
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	5 cut(s)	223, 283, 445, 689, 979
Hpy166II	GTNNAC	6 cut(s)	142, 467, 655, 666, 794, 916
Hpy188I	TCNGA	4 cut(s)	220, 477, 673, 688
Hpy188III	TCNNGA	3 cut(s)	166, 560, 756
Hpy8I	GTNNAC	6 cut(s)	142, 467, 655, 666, 794, 916
Hpy99I	CGWCG	2 cut(s)	335, 371
HpyAV	CCTTC	4 cut(s)	531, 668, 951, 967
HpyCH4III	ACNGT	7 cut(s)	94, 342, 425, 431, 692, 937, 961
HpyCH4V	TGCA	8 cut(s)	118, 153, 183, 195, 387, 614, 738, 1030
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 327
HpyF3I	CTNAG	3 cut(s)	217, 356, 801
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	3 cut(s)	248, 387, 983
HspAI	GCGC	1 cut(s)	187
Kzo9I	GATC	7 cut(s)	31, 206, 220, 238, 380, 496, 976
LmnI	GCTCC	2 cut(s)	13, 991
Lsp1109I	GCAGC	3 cut(s)	347, 375, 427
LweI	GCATC	1 cut(s)	520
MaeI	CTAG	2 cut(s)	80, 560
MaeIII	GTNAC	3 cut(s)	425, 638, 899
MalI	GATC	7 cut(s)	33, 208, 222, 240, 382, 498, 978
MboI	GATC	7 cut(s)	31, 206, 220, 238, 380, 496, 976
MboII	GAAGA	6 cut(s)	16, 77, 80, 464, 770, 1038
MflI	RGATCY	3 cut(s)	31, 220, 238
MhlI	GDGCHC	2 cut(s)	87, 323
MluCI	AATT	6 cut(s)	350, 591, 739, 759, 952, 1063
MlyI	GAGTC	1 cut(s)	717
MmeI	TCCRAC	2 cut(s)	687, 874
MnlI	CCTC	7 cut(s)	234, 407, 480, 510, 679, 876, 935
MseI	TTAA	5 cut(s)	585, 768, 987, 1017, 1069
MslI	CAYNNNNRTG	2 cut(s)	645, 1019
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	1 cut(s)	457
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	22, 327
NciI	CCSGG	1 cut(s)	457
NdeII	GATC	7 cut(s)	31, 206, 220, 238, 380, 496, 976
NlaIII	CATG	3 cut(s)	248, 387, 983
NlaIV	GGNNCC	4 cut(s)	26, 47, 923, 993
NmuCI	GTSAC	2 cut(s)	425, 638
NspI	RCATGY	1 cut(s)	248
OliI	CACNNNNGTG	1 cut(s)	645
PfeI	GAWTC	3 cut(s)	156, 228, 563
PkrI	GCNGC	3 cut(s)	337, 365, 417
PleI	GAGTC	1 cut(s)	717
PpsI	GAGTC	1 cut(s)	717
PsiI	TTATAA	1 cut(s)	951
PspN4I	GGNNCC	4 cut(s)	26, 47, 923, 993
PspPI	GGNCC	3 cut(s)	45, 518, 666
PstI	CTGCAG	1 cut(s)	155
PsuI	RGATCY	3 cut(s)	31, 220, 238
RsaI	GTAC	2 cut(s)	290, 808
RsaNI	GTAC	2 cut(s)	289, 807
RseI	CAYNNNNRTG	2 cut(s)	645, 1019
SalI	GTCGAC	1 cut(s)	140
SaqAI	TTAA	5 cut(s)	585, 768, 987, 1017, 1069
SatI	GCNGC	3 cut(s)	336, 364, 416
Sau3AI	GATC	7 cut(s)	31, 206, 220, 238, 380, 496, 976
Sau96I	GGNCC	3 cut(s)	45, 518, 666
SchI	GAGTC	1 cut(s)	717
ScrFI	CCNGG	1 cut(s)	457
SduI	GDGCHC	2 cut(s)	87, 323
SfaNI	GCATC	1 cut(s)	520
SfcI	CTRYAG	1 cut(s)	151
SinI	GGWCC	1 cut(s)	666
SmiMI	CAYNNNNRTG	2 cut(s)	645, 1019
SmlI	CTYRAG	1 cut(s)	1053
SmoI	CTYRAG	1 cut(s)	1053
Sse9I	AATT	6 cut(s)	350, 591, 739, 759, 952, 1063
SsiI	CCGC	1 cut(s)	130
SspMI	CTAG	2 cut(s)	80, 560
StyD4I	CCNGG	1 cut(s)	455
StyI	CCWWGG	3 cut(s)	79, 904, 995
TaaI	ACNGT	7 cut(s)	94, 342, 425, 431, 692, 937, 961
TaqI	TCGA	3 cut(s)	141, 226, 317
TasI	AATT	6 cut(s)	350, 591, 739, 759, 952, 1063
TfiI	GAWTC	3 cut(s)	156, 228, 563
Tru1I	TTAA	5 cut(s)	585, 768, 987, 1017, 1069
Tru9I	TTAA	5 cut(s)	585, 768, 987, 1017, 1069
TscAI	CASTG	5 cut(s)	97, 155, 345, 652, 964
TseFI	GTSAC	2 cut(s)	425, 638
TseI	GCWGC	3 cut(s)	335, 363, 415
Tsp45I	GTSAC	2 cut(s)	425, 638
TspDTI	ATGAA	8 cut(s)	17, 78, 86, 163, 427, 500, 770, 986
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	5 cut(s)	97, 155, 345, 652, 964
VpaK11BI	GGWCC	1 cut(s)	666
XapI	RAATTY	2 cut(s)	759, 1063
XbaI	TCTAGA	1 cut(s)	559
XceI	RCATGY	1 cut(s)	248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XmaJI	CCTAGG	1 cut(s)	79
XmiI	GTMKAC	3 cut(s)	141, 654, 793
XspI	CTAG	2 cut(s)	80, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.