Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0013654

Physical Location & Seq

Genomic Coordinates Forward (+)

60873053 .. 60875751

Gene Structure 2699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG426300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTCGTTTGCTCAGAAGGTGATGGTTTTGACGGTTGGCTCCGGGAGTTGGAGAAGCATAATTTGGTACCCTGGCTACCATTCTGAGCAAGAAAATGGGATTTATGTAAATGGATATCTCCATTGGATTGGCCAGTGTGGTAAGGGTTCTTTGGTGATACATTCCTTTAACCTTGAAAGTGAGAGTTTTGAGCAGTTACCAATGCCACCTTGTTGTTTTGATCCCCATAAAGCTCAGTTGAACCTTGGAGTCTTTAACGGCTGCCTTTCTCTAACTGTTCGCTCGAGCTATTATATCAGGATTTGGGTGATGAAGAATTATGGTGTTAAGGAGTACTCTTGGACCAGAGAGGTTGACATTAGAGAAATACTGGGTGGTCTTGTAAAACGTAGTTGTGATCGATTATCCTACTCGTGTTCTAGAATACACAAAGGAGAGGCAAGTCTTGGTGTTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

152

Amino Acids

17.34

Weight (kDa)

8.75

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	4 - 113	3.5e-13	F-box associated beta propeller domain
FBA_1	PF07734	7 - 119	2.9e-12	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13040 FvH4_4g13060
malus_domestica	MD04G1020200.v1.1
rosa_chinensis	RchiOBHm_Chr4g0412781 RchiOBHm_Chr4g0412791
rosa_laevigata	RLG00000008259
rosa_multiflora	Rmu_sc0001238.1_g000047 Rmu_sc0001569.1_g000012 Rmu_sc0041034.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357040
rosa_rugosa	Rorug04G0116800
rosa_samantha	Rh4AG175500 Rh4BG175300 Rh4BG175400 Rh4CG186700 Rh4DG172300 Rh6CG426300
rosa_wichuraiana	Rw4G014730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	66
AccB1I	GGYRCC	1 cut(s)	66
AclWI	GGATC	1 cut(s)	215
AcoI	YGGCCR	1 cut(s)	130
AfaI	GTAC	2 cut(s)	68, 335
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	2 cut(s)	176, 241
AjnI	CCWGG	1 cut(s)	70
AjuI	GAANNNNNNNTTGG	2 cut(s)	46, 78
AluBI	AGCT	2 cut(s)	233, 288
AluI	AGCT	2 cut(s)	233, 288
AlwI	GGATC	1 cut(s)	215
Ama87I	CYCGRG	1 cut(s)	283
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	1 cut(s)	261
Asp718I	GGTACC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	342
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	3 cut(s)	31, 166, 319
AvaI	CYCGRG	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	342
BalI	TGGCCA	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	66
BauI	CACGAG	1 cut(s)	412
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	1 cut(s)	16
BceAI	ACGGC	1 cut(s)	274
BciT130I	CCWGG	1 cut(s)	72
BcnI	CCSGG	1 cut(s)	43
BfaI	CTAG	1 cut(s)	420
BisI	GCNGC	1 cut(s)	262
BlsI	GCNGC	1 cut(s)	263
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	2 cut(s)	43, 72
Bme18I	GGWCC	1 cut(s)	342
BmeT110I	CYCGRG	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	342
BmiI	GGNNCC	2 cut(s)	40, 68
BmrFI	CCNGG	2 cut(s)	43, 72
BmrI	ACTGGG	1 cut(s)	380
BmuI	ACTGGG	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	43
Bsa29I	ATCGAT	1 cut(s)	400
BsaJI	CCNNGG	2 cut(s)	70, 244
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse1I	ACTGG	2 cut(s)	133, 375
BseBI	CCWGG	1 cut(s)	72
BseCI	ATCGAT	1 cut(s)	400
BseDI	CCNNGG	2 cut(s)	70, 244
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMII	CTCAG	3 cut(s)	26, 75, 248
BseNI	ACTGG	2 cut(s)	133, 375
BseXI	GCAGC	1 cut(s)	248
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	66
BshVI	ATCGAT	1 cut(s)	400
BsiHKCI	CYCGRG	1 cut(s)	283
BsiSI	CCGG	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	48
BsnI	GGCC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	283
Bsp143I	GATC	2 cut(s)	220, 397
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	3 cut(s)	25, 76, 247
BspDI	ATCGAT	1 cut(s)	400
BspLI	GGNNCC	2 cut(s)	40, 68
BspPI	GGATC	1 cut(s)	215
BspT107I	GGYRCC	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	133, 375
BssECI	CCNNGG	2 cut(s)	70, 244
BssMI	GATC	2 cut(s)	220, 397
BssSI	CACGAG	1 cut(s)	412
BssT1I	CCWWGG	1 cut(s)	244
Bst2BI	CACGAG	1 cut(s)	412
Bst2UI	CCWGG	1 cut(s)	72
Bst4CI	ACNGT	2 cut(s)	34, 277
BstDEI	CTNAG	3 cut(s)	12, 84, 234
BstKTI	GATC	2 cut(s)	223, 400
BstMBI	GATC	2 cut(s)	220, 397
BstNI	CCWGG	1 cut(s)	72
BstSCI	CCNGG	2 cut(s)	41, 70
BstV1I	GCAGC	1 cut(s)	248
BstXI	CCANNNNNNTGG	1 cut(s)	128
Bsu15I	ATCGAT	1 cut(s)	400
BsuRI	GGCC	1 cut(s)	132
BsuTUI	ATCGAT	1 cut(s)	400
BtsIMutI	CAGTG	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	342
ClaI	ATCGAT	1 cut(s)	400
Csp6I	GTAC	2 cut(s)	67, 334
CviJI	RGCY	6 cut(s)	39, 75, 132, 233, 261, 288
CviKI_1	RGCY	6 cut(s)	39, 75, 132, 233, 261, 288
CviQI	GTAC	2 cut(s)	67, 334
DdeI	CTNAG	3 cut(s)	12, 84, 234
DpnI	GATC	2 cut(s)	222, 399
DpnII	GATC	2 cut(s)	220, 397
EaeI	YGGCCR	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	244
Eco32I	GATATC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	70
EcoRV	GATATC	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	244
FaiI	YATR	5 cut(s)	59, 105, 228, 294, 321
Fnu4HI	GCNGC	1 cut(s)	262
Fsp4HI	GCNGC	1 cut(s)	262
FspBI	CTAG	1 cut(s)	420
GluI	GCNGC	1 cut(s)	262
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	42
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	1 cut(s)	249
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	3 cut(s)	31, 166, 319
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	2 cut(s)	15, 85
Hpy188III	TCNNGA	2 cut(s)	298, 420
Hpy8I	GTNNAC	1 cut(s)	355
HpyAV	CCTTC	1 cut(s)	10
HpyCH4III	ACNGT	2 cut(s)	34, 277
HpyCH4IV	ACGT	1 cut(s)	388
HpyF3I	CTNAG	3 cut(s)	12, 84, 234
HpySE526I	ACGT	1 cut(s)	388
KpnI	GGTACC	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	220, 397
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	7 cut(s)	55, 57, 84, 146, 283, 356, 358
Lsp1109I	GCAGC	1 cut(s)	248
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	1 cut(s)	388
MaeIII	GTNAC	1 cut(s)	195
MalI	GATC	2 cut(s)	222, 399
MboI	GATC	2 cut(s)	220, 397
MboII	GAAGA	1 cut(s)	325
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	2 cut(s)	60, 316
MluNI	TGGCCA	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	258
MmeI	TCCRAC	1 cut(s)	29
MnlI	CCTC	2 cut(s)	343, 430
Mox20I	TGGCCA	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	3 cut(s)	168, 255, 327
Msp20I	TGGCCA	1 cut(s)	132
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	2 cut(s)	43, 72
MvaI	CCWGG	1 cut(s)	72
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	2 cut(s)	220, 397
NlaIV	GGNNCC	2 cut(s)	40, 68
PaeR7I	CTCGAG	1 cut(s)	283
PfoI	TCCNGGA	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	263
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	2 cut(s)	40, 68
PspPI	GGNCC	1 cut(s)	342
PspXI	VCTCGAGB	1 cut(s)	283
RsaI	GTAC	2 cut(s)	68, 335
RsaNI	GTAC	2 cut(s)	67, 334
SaqAI	TTAA	3 cut(s)	168, 255, 327
SatI	GCNGC	1 cut(s)	262
Sau3AI	GATC	2 cut(s)	220, 397
Sau96I	GGNCC	1 cut(s)	342
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	1 cut(s)	258
ScrFI	CCNGG	2 cut(s)	43, 72
SetI	ASST	8 cut(s)	21, 174, 211, 235, 246, 290, 354, 391
Sfr274I	CTCGAG	1 cut(s)	283
SinI	GGWCC	1 cut(s)	342
SlaI	CTCGAG	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	283
SmoI	CTYRAG	1 cut(s)	283
Sse9I	AATT	2 cut(s)	60, 316
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	41, 70
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	2 cut(s)	34, 277
TaiI	ACGT	1 cut(s)	391
TaqI	TCGA	2 cut(s)	284, 400
TasI	AATT	2 cut(s)	60, 316
TatI	WGTACW	1 cut(s)	333
Tru1I	TTAA	3 cut(s)	168, 255, 327
Tru9I	TTAA	3 cut(s)	168, 255, 327
TscAI	CASTG	1 cut(s)	140
TseI	GCWGC	1 cut(s)	261
TspDTI	ATGAA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	342
XbaI	TCTAGA	1 cut(s)	419
XhoI	CTCGAG	1 cut(s)	283
XspI	CTAG	1 cut(s)	420
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.