Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0013654

Physical Location & Seq

Genomic Coordinates Reverse (-)

2399724 .. 2403177

Gene Structure 3454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1020200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGGAGGTAATGGTTTTGACTGTTGGCACTGGAAGTTGGAGAAATGTTGGGAATTCCGTATACCCTTTTGGGAACCAATGTGTTTCCAAGAGTTGCCATTACCGCCTTGTTCTTTGGGAAAGCGTCTTGTTAACCTTGCAGTCCTGAGAGGCTGCCTCTCTGTATACGTTATCTCGTTGGGAAGTATCAATGTTTGGGTGATGAAAGATTATGGCATTAAGGAATCGTGGGCCGGAGAGCTTGTCATGCAGCAAGTGATTGGGTACAGAACTAGTTTTTCTGCTACTCAATTGTTGAAAGAAGGGCCAAGTGGTGTTTTTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

109

Amino Acids

12.31

Weight (kDa)

7.6

Isoelectric Point (pI)

23.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13040 FvH4_4g13060
malus_domestica	MD04G1020200.v1.1
rosa_chinensis	RchiOBHm_Chr4g0412781 RchiOBHm_Chr4g0412791
rosa_laevigata	RLG00000008259
rosa_multiflora	Rmu_sc0001238.1_g000047 Rmu_sc0001569.1_g000012 Rmu_sc0041034.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357040
rosa_rugosa	Rorug04G0116800
rosa_samantha	Rh4AG175500 Rh4BG175300 Rh4BG175400 Rh4CG186700 Rh4DG172300 Rh6CG426300
rosa_wichuraiana	Rw4G014730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	61, 165
AciI	CCGC	1 cut(s)	104
AcsI	RAATTY	1 cut(s)	53
AfaI	GTAC	1 cut(s)	266
AgsI	TTSAA	1 cut(s)	298
AhlI	ACTAGT	1 cut(s)	272
AluBI	AGCT	1 cut(s)	241
AluI	AGCT	1 cut(s)	241
AoxI	GGCC	2 cut(s)	231, 305
ApeKI	GCWGC	2 cut(s)	153, 250
ApoI	RAATTY	1 cut(s)	53
AspS9I	GGNCC	2 cut(s)	231, 305
AsuHPI	GGTGA	1 cut(s)	211
BbvI	GCAGC	2 cut(s)	140, 262
BcuI	ACTAGT	1 cut(s)	272
BfaI	CTAG	1 cut(s)	273
BisI	GCNGC	2 cut(s)	154, 251
BlsI	GCNGC	2 cut(s)	155, 252
BmgT120I	GGNCC	2 cut(s)	231, 305
BmiI	GGNNCC	1 cut(s)	75
BplI	GAGNNNNNCTC	2 cut(s)	141, 173
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bse1I	ACTGG	1 cut(s)	35
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	140, 262
BshFI	GGCC	2 cut(s)	233, 307
BsiSI	CCGG	1 cut(s)	234
BsnI	GGCC	2 cut(s)	233, 307
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	2 cut(s)	233, 307
BspCNI	CTCAG	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	35
BssNAI	GTATAC	2 cut(s)	62, 166
Bst1107I	GTATAC	2 cut(s)	62, 166
Bst4CI	ACNGT	1 cut(s)	23
BstDEI	CTNAG	1 cut(s)	146
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 247
BstV1I	GCAGC	2 cut(s)	140, 262
BstZ17I	GTATAC	2 cut(s)	62, 166
BsuRI	GGCC	2 cut(s)	233, 307
BtsIMutI	CAGTG	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	231, 305
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	4 cut(s)	153, 233, 241, 307
CviKI_1	RGCY	4 cut(s)	153, 233, 241, 307
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	53
FaeI	CATG	1 cut(s)	250
FaiI	YATR	4 cut(s)	62, 166, 213, 248
FatI	CATG	1 cut(s)	246
FblI	GTMKAC	2 cut(s)	61, 165
Fnu4HI	GCNGC	2 cut(s)	154, 251
Fsp4HI	GCNGC	2 cut(s)	154, 251
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	2 cut(s)	154, 251
HaeIII	GGCC	2 cut(s)	233, 307
HapII	CCGG	1 cut(s)	234
HgaI	GACGC	1 cut(s)	113
Hin1II	CATG	1 cut(s)	250
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	1 cut(s)	224
HpaI	GTTAAC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	3 cut(s)	62, 133, 166
Hpy188III	TCNNGA	1 cut(s)	145
Hpy8I	GTNNAC	3 cut(s)	62, 133, 166
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	2 cut(s)	140, 250
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 247
HpyF3I	CTNAG	1 cut(s)	146
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	250
KspAI	GTTAAC	1 cut(s)	133
LpnPI	CCDG	3 cut(s)	16, 158, 247
Lsp1109I	GCAGC	2 cut(s)	140, 262
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	1 cut(s)	168
MfeI	CAATTG	1 cut(s)	290
MluCI	AATT	2 cut(s)	53, 290
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	2 cut(s)	143, 167
MseI	TTAA	3 cut(s)	132, 219, 325
MspI	CCGG	1 cut(s)	234
MunI	CAATTG	1 cut(s)	290
MwoI	GCNNNNNNNGC	2 cut(s)	103, 247
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	2 cut(s)	155, 252
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	2 cut(s)	231, 305
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SaqAI	TTAA	3 cut(s)	132, 219, 325
SatI	GCNGC	2 cut(s)	154, 251
Sau96I	GGNCC	2 cut(s)	231, 305
SetI	ASST	4 cut(s)	10, 138, 171, 243
SpeI	ACTAGT	1 cut(s)	272
Sse9I	AATT	2 cut(s)	53, 290
SsiI	CCGC	1 cut(s)	104
SspMI	CTAG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	23
TaiI	ACGT	1 cut(s)	171
TasI	AATT	2 cut(s)	53, 290
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	3 cut(s)	132, 219, 325
Tru9I	TTAA	3 cut(s)	132, 219, 325
TscAI	CASTG	1 cut(s)	35
TseI	GCWGC	2 cut(s)	153, 250
TspDTI	ATGAA	1 cut(s)	218
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	35
XapI	RAATTY	1 cut(s)	53
XmiI	GTMKAC	2 cut(s)	61, 165
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.