Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013654

Physical Location & Seq

Genomic Coordinates Reverse (-)

16685476 .. 16688189

Gene Structure 2714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g13060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCTTTGTGGGATCATTCTAGCTCTCCCGAAAGCTATGAAGCCAACGATCCTCCTCCCATTTCCTGTGGGCCTTCTGCTGATGCCATCACTCATAAAAATTTGGCTTTTCTAGATTCTTTTCGTCCAAAGTCTGTTCAGGAACTTGTGTTTCAATCTTGTTCTGCATTTGGGTTTGGGTTTAGTCCAATAAGTGATGTTTATAAAGTAGTTTTCTTTACTAGTTCAAGGTTAATAGAAGCTACGTCTCCTCGTGAGTTTGGGCTTAGTCGTGGACCTGAGAAGGTGACGGTTTTGACTGTTGGTTCTGGGAGCTGGAGACATATTGGGGACTCTGTTATGGGAGAATTTGACCATCAATCAGGAATTTATCTTAATGGATACCTTCATTGGATTGGTAGAACTACACTGGTTGGGTCTCGTTTTATATATGCCTATTGTATTGAAACTGAGAGTTTCCAACAGATGCCACTACCACCTTGGACTGTTGATAGCGACACAACTAGATGTAACCTTGGAGTCTTGAACGGTTGTCTCTATATAACTGTTGGTTTGAGTTGTAATATCAATGTCTGGGTGATGAAGGACTACGGCATTAAGGAGTCCTGGGCCAAAGAACTTGACATGGGGGTGAAATATGGTGCAGCGTCTGGTTCATCTACTCAAGCTTTGAATTTTTCAAAGGAACGACAAGTGTTGTTGTTACAGAATAGGTTGCAGGCTCATATTCTTGGAATCAAGGGCTTTGTGGGGATTGAGGTCGATGGGATGAAACCTTTGATTGACGCTTCATATCTCCATATTCCAAGCTTTGTTTCACTTAAAGATGTCTTTTGGGGTCAAAACTTGATGTCTGGTCGATTCGAAAAATTGAGGATTAGAGATGCTGGTGAATTGCAACGACCTGCACCGAATGAGACGATAGTCAGTAGCCGGCCCTGCAGAAGTCAACAAAGGCCAGGTAGCATGAAAGCGAATGCGGCAGATCGTGGGAGTGCTGAAACAGATCAACGTAATCTGCTACCTAAAGGGACTGTTCGATCTAAATCTGCAGTAGTTGAAAACAAACAACAGAACATGAGAGCACCAAAGAAGGCAGAAACCACACATGGAGCTCAACCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

376

Amino Acids

41.42

Weight (kDa)

8.59

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	54 - 213	1.5e-09	F-box associated beta propeller domain
FBA_3	PF08268	57 - 206	4.6e-13	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13040 FvH4_4g13060
malus_domestica	MD04G1020200.v1.1
rosa_chinensis	RchiOBHm_Chr4g0412781 RchiOBHm_Chr4g0412791
rosa_laevigata	RLG00000008259
rosa_multiflora	Rmu_sc0001238.1_g000047 Rmu_sc0001569.1_g000012 Rmu_sc0041034.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357040
rosa_rugosa	Rorug04G0116800
rosa_samantha	Rh4AG175500 Rh4BG175300 Rh4BG175400 Rh4CG186700 Rh4DG172300 Rh6CG426300
rosa_wichuraiana	Rw4G014730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	204
Acc36I	ACCTGC	1 cut(s)	913
AciI	CCGC	1 cut(s)	980
AclWI	GGATC	2 cut(s)	21, 44
AcsI	RAATTY	4 cut(s)	100, 347, 366, 673
AgsI	TTSAA	7 cut(s)	155, 228, 446, 526, 673, 681, 1061
AhlI	ACTAGT	1 cut(s)	221
AjnI	CCWGG	2 cut(s)	605, 958
AjuI	GAANNNNNNNTTGG	2 cut(s)	799, 831
AluBI	AGCT	7 cut(s)	24, 36, 242, 315, 668, 810, 1115
AluI	AGCT	7 cut(s)	24, 36, 242, 315, 668, 810, 1115
Alw21I	GWGCWC	2 cut(s)	1087, 1117
Alw26I	GTCTC	5 cut(s)	252, 313, 423, 539, 911
AlwI	GGATC	2 cut(s)	21, 44
AlwNI	CAGNNNCTG	1 cut(s)	650
AoxI	GGCC	4 cut(s)	71, 609, 935, 956
ApeKI	GCWGC	1 cut(s)	644
ApoI	RAATTY	4 cut(s)	100, 347, 366, 673
AspS9I	GGNCC	4 cut(s)	71, 275, 609, 936
AsuHPI	GGTGA	4 cut(s)	298, 589, 643, 902
AsuII	TTCGAA	1 cut(s)	864
AvaII	GGWCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	1117
BauI	CACGAG	1 cut(s)	252
Bbv12I	GWGCWC	2 cut(s)	1087, 1117
BbvI	GCAGC	1 cut(s)	656
BccI	CCATC	3 cut(s)	95, 363, 758
BceAI	ACGGC	1 cut(s)	607
BciT130I	CCWGG	2 cut(s)	607, 960
BciVI	GTATCC	1 cut(s)	374
BcoDI	GTCTC	5 cut(s)	252, 313, 423, 539, 911
BcuI	ACTAGT	1 cut(s)	221
BfaI	CTAG	4 cut(s)	21, 113, 222, 504
BfmI	CTRYAG	2 cut(s)	940, 1050
BfuAI	ACCTGC	1 cut(s)	913
BfuI	GTATCC	1 cut(s)	374
BisI	GCNGC	2 cut(s)	645, 981
BlsI	GCNGC	2 cut(s)	646, 982
Bme1390I	CCNGG	2 cut(s)	607, 960
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	4 cut(s)	71, 275, 609, 936
BmrFI	CCNGG	2 cut(s)	607, 960
BmsI	GCATC	3 cut(s)	73, 456, 874
BoxI	GACNNNNGTC	1 cut(s)	923
BpmI	CTGGAG	1 cut(s)	337
Bpu14I	TTCGAA	1 cut(s)	864
BpuEI	CTTGAG	1 cut(s)	648
BsaBI	GATNNNNATC	1 cut(s)	1045
BsaI	GGTCTC	1 cut(s)	423
BsaJI	CCNNGG	3 cut(s)	479, 514, 606
Bse118I	RCCGGY	1 cut(s)	933
Bse1I	ACTGG	1 cut(s)	414
Bse8I	GATNNNNATC	1 cut(s)	1045
BseBI	CCWGG	2 cut(s)	607, 960
BseDI	CCNNGG	3 cut(s)	479, 514, 606
BseGI	GGATG	1 cut(s)	774
BseJI	GATNNNNATC	1 cut(s)	1045
BseMII	CTCAG	2 cut(s)	270, 441
BseNI	ACTGG	1 cut(s)	414
BseRI	GAGGAG	2 cut(s)	45, 240
BseXI	GCAGC	1 cut(s)	656
BsgI	GTGCAG	2 cut(s)	663, 891
BshFI	GGCC	4 cut(s)	73, 611, 937, 958
BsiHKAI	GWGCWC	2 cut(s)	1087, 1117
BsiSI	CCGG	1 cut(s)	934
BslFI	GGGAC	2 cut(s)	344, 1045
BsmAI	GTCTC	5 cut(s)	252, 313, 423, 539, 911
BsmBI	CGTCTC	2 cut(s)	252, 911
BsmFI	GGGAC	2 cut(s)	344, 1045
BsmI	GAATGC	1 cut(s)	982
BsnI	GGCC	4 cut(s)	73, 611, 937, 958
Bso31I	GGTCTC	1 cut(s)	423
Bsp119I	TTCGAA	1 cut(s)	864
Bsp1286I	GDGCHC	2 cut(s)	1087, 1117
Bsp143I	GATC	5 cut(s)	13, 49, 985, 1006, 1040
BspACI	CCGC	1 cut(s)	980
BspANI	GGCC	4 cut(s)	73, 611, 937, 958
BspCNI	CTCAG	2 cut(s)	271, 442
BspMAI	CTGCAG	2 cut(s)	944, 1054
BspMI	ACCTGC	1 cut(s)	913
BspPI	GGATC	2 cut(s)	21, 44
BspT104I	TTCGAA	1 cut(s)	864
BspTNI	GGTCTC	1 cut(s)	423
BsrFI	RCCGGY	1 cut(s)	933
BsrI	ACTGG	1 cut(s)	414
BssAI	RCCGGY	1 cut(s)	933
BssECI	CCNNGG	3 cut(s)	479, 514, 606
BssMI	GATC	5 cut(s)	13, 49, 985, 1006, 1040
BssSI	CACGAG	1 cut(s)	252
BssT1I	CCWWGG	2 cut(s)	479, 514
Bst2BI	CACGAG	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	607, 960
Bst4CI	ACNGT	6 cut(s)	292, 301, 487, 530, 547, 1036
BstBI	TTCGAA	1 cut(s)	864
BstC8I	GCNNGC	2 cut(s)	720, 935
BstDEI	CTNAG	3 cut(s)	266, 279, 450
BstF5I	GGATG	1 cut(s)	774
BstKTI	GATC	5 cut(s)	16, 52, 988, 1009, 1043
BstMAI	GTCTC	5 cut(s)	252, 313, 423, 539, 911
BstMBI	GATC	5 cut(s)	13, 49, 985, 1006, 1040
BstMWI	GCNNNNNNNGC	2 cut(s)	939, 980
BstNI	CCWGG	2 cut(s)	607, 960
BstPAI	GACNNNNGTC	1 cut(s)	923
BstSCI	CCNGG	2 cut(s)	605, 958
BstSFI	CTRYAG	2 cut(s)	940, 1050
BstV1I	GCAGC	1 cut(s)	656
BsuI	GTATCC	1 cut(s)	374
BsuRI	GGCC	4 cut(s)	73, 611, 937, 958
BtsCI	GGATG	1 cut(s)	774
BtsIMutI	CAGTG	1 cut(s)	407
BveI	ACCTGC	1 cut(s)	913
Cac8I	GCNNGC	2 cut(s)	720, 935
CaiI	CAGNNNCTG	1 cut(s)	650
Cfr10I	RCCGGY	1 cut(s)	933
Cfr13I	GGNCC	4 cut(s)	71, 275, 609, 936
CseI	GACGC	2 cut(s)	636, 794
CviAII	CATG	4 cut(s)	625, 967, 1078, 1109
DdeI	CTNAG	3 cut(s)	266, 279, 450
DpnI	GATC	5 cut(s)	15, 51, 987, 1008, 1042
DpnII	GATC	5 cut(s)	13, 49, 985, 1006, 1040
Ecl136II	GAGCTC	1 cut(s)	1115
Eco130I	CCWWGG	2 cut(s)	479, 514
Eco24I	GRGCYC	1 cut(s)	1117
Eco31I	GGTCTC	1 cut(s)	423
Eco47I	GGWCC	1 cut(s)	275
Eco53kI	GAGCTC	1 cut(s)	1115
EcoICRI	GAGCTC	1 cut(s)	1115
EcoRII	CCWGG	2 cut(s)	605, 958
EcoT14I	CCWWGG	2 cut(s)	479, 514
EcoT38I	GRGCYC	1 cut(s)	1117
ErhI	CCWWGG	2 cut(s)	479, 514
Esp3I	CGTCTC	2 cut(s)	252, 911
FaeI	CATG	4 cut(s)	628, 970, 1081, 1112
FaqI	GGGAC	2 cut(s)	344, 1045
FatI	CATG	4 cut(s)	624, 966, 1077, 1108
Fnu4HI	GCNGC	2 cut(s)	645, 981
FokI	GGATG	1 cut(s)	781
FriOI	GRGCYC	1 cut(s)	1117
Fsp4HI	GCNGC	2 cut(s)	645, 981
FspBI	CTAG	4 cut(s)	21, 113, 222, 504
GluI	GCNGC	2 cut(s)	645, 981
GsuI	CTGGAG	1 cut(s)	337
HaeIII	GGCC	4 cut(s)	73, 611, 937, 958
HapII	CCGG	1 cut(s)	934
HgaI	GACGC	2 cut(s)	636, 794
Hin1II	CATG	4 cut(s)	628, 970, 1081, 1112
HincII	GTYRAC	1 cut(s)	950
HindII	GTYRAC	1 cut(s)	950
HindIII	AAGCTT	2 cut(s)	666, 808
HinfI	GANTC	6 cut(s)	116, 332, 519, 602, 735, 861
HpaII	CCGG	1 cut(s)	934
HphI	GGTGA	4 cut(s)	298, 589, 643, 902
Hpy166II	GTNNAC	2 cut(s)	275, 950
Hpy188III	TCNNGA	6 cut(s)	29, 113, 140, 254, 363, 523
Hpy8I	GTNNAC	2 cut(s)	275, 950
HpyAV	CCTTC	5 cut(s)	84, 277, 395, 577, 1087
HpyCH4III	ACNGT	6 cut(s)	292, 301, 487, 530, 547, 1036
HpyCH4IV	ACGT	2 cut(s)	245, 1012
HpyCH4V	TGCA	7 cut(s)	167, 644, 718, 898, 908, 942, 1052
HpyF10VI	GCNNNNNNNGC	2 cut(s)	939, 980
HpyF3I	CTNAG	3 cut(s)	266, 279, 450
HpySE526I	ACGT	2 cut(s)	245, 1012
Hsp92II	CATG	4 cut(s)	628, 970, 1081, 1112
KroI	GCCGGC	1 cut(s)	933
KroNI	GCCGGC	1 cut(s)	935
Kzo9I	GATC	5 cut(s)	13, 49, 985, 1006, 1040
LmnI	GCTCC	2 cut(s)	312, 1112
Lsp1109I	GCAGC	1 cut(s)	656
LweI	GCATC	3 cut(s)	73, 456, 874
MaeI	CTAG	4 cut(s)	21, 113, 222, 504
MaeII	ACGT	2 cut(s)	245, 1012
MaeIII	GTNAC	3 cut(s)	286, 509, 702
MalI	GATC	5 cut(s)	15, 51, 987, 1008, 1042
MboI	GATC	5 cut(s)	13, 49, 985, 1006, 1040
MhlI	GDGCHC	2 cut(s)	1087, 1117
MluCI	AATT	6 cut(s)	100, 347, 366, 673, 869, 893
MlyI	GAGTC	3 cut(s)	326, 528, 611
MmeI	TCCRAC	1 cut(s)	484
MnlI	CCTC	5 cut(s)	63, 66, 261, 751, 867
MroNI	GCCGGC	1 cut(s)	933
MseI	TTAA	4 cut(s)	233, 375, 597, 822
MslI	CAYNNNNRTG	1 cut(s)	629
MspI	CCGG	1 cut(s)	934
MspR9I	CCNGG	2 cut(s)	607, 960
Mva1269I	GAATGC	1 cut(s)	982
MvaI	CCWGG	2 cut(s)	607, 960
MwoI	GCNNNNNNNGC	2 cut(s)	939, 980
NaeI	GCCGGC	1 cut(s)	935
NdeII	GATC	5 cut(s)	13, 49, 985, 1006, 1040
NgoMIV	GCCGGC	1 cut(s)	933
NlaIII	CATG	4 cut(s)	628, 970, 1081, 1112
NmuCI	GTSAC	1 cut(s)	286
NspV	TTCGAA	1 cut(s)	864
PctI	GAATGC	1 cut(s)	982
PdiI	GCCGGC	1 cut(s)	935
PfeI	GAWTC	3 cut(s)	116, 735, 861
PkrI	GCNGC	2 cut(s)	646, 982
PleI	GAGTC	3 cut(s)	326, 527, 610
PpsI	GAGTC	3 cut(s)	326, 527, 610
PshAI	GACNNNNGTC	1 cut(s)	923
PsiI	TTATAA	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	1117
Psp6I	CCWGG	2 cut(s)	605, 958
PspGI	CCWGG	2 cut(s)	605, 958
PspPI	GGNCC	4 cut(s)	71, 275, 609, 936
PstI	CTGCAG	2 cut(s)	944, 1054
PstNI	CAGNNNCTG	1 cut(s)	650
RseI	CAYNNNNRTG	1 cut(s)	629
SacI	GAGCTC	1 cut(s)	1117
SaqAI	TTAA	4 cut(s)	233, 375, 597, 822
SatI	GCNGC	2 cut(s)	645, 981
Sau3AI	GATC	5 cut(s)	13, 49, 985, 1006, 1040
Sau96I	GGNCC	4 cut(s)	71, 275, 609, 936
SchI	GAGTC	3 cut(s)	326, 528, 611
ScrFI	CCNGG	2 cut(s)	607, 960
SduI	GDGCHC	2 cut(s)	1087, 1117
SfaNI	GCATC	3 cut(s)	73, 456, 874
SfcI	CTRYAG	2 cut(s)	940, 1050
SfuI	TTCGAA	1 cut(s)	864
SinI	GGWCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	629
SmlI	CTYRAG	1 cut(s)	663
SmoI	CTYRAG	1 cut(s)	663
SpeI	ACTAGT	1 cut(s)	221
Sse9I	AATT	6 cut(s)	100, 347, 366, 673, 869, 893
SsiI	CCGC	1 cut(s)	980
SspMI	CTAG	4 cut(s)	21, 113, 222, 504
SstI	GAGCTC	1 cut(s)	1117
StyD4I	CCNGG	2 cut(s)	605, 958
StyI	CCWWGG	2 cut(s)	479, 514
TaaI	ACNGT	6 cut(s)	292, 301, 487, 530, 547, 1036
TaiI	ACGT	2 cut(s)	248, 1015
TaqI	TCGA	4 cut(s)	762, 859, 864, 1039
TasI	AATT	6 cut(s)	100, 347, 366, 673, 869, 893
TauI	GCSGC	1 cut(s)	983
TfiI	GAWTC	3 cut(s)	116, 735, 861
Tru1I	TTAA	4 cut(s)	233, 375, 597, 822
Tru9I	TTAA	4 cut(s)	233, 375, 597, 822
TscAI	CASTG	1 cut(s)	414
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	1 cut(s)	644
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	7 cut(s)	54, 377, 596, 645, 780, 785, 983
TspRI	CASTG	1 cut(s)	414
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	4 cut(s)	100, 347, 366, 673
XbaI	TCTAGA	1 cut(s)	112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	477
XspI	CTAG	4 cut(s)	21, 113, 222, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.