Rorug04G0116800

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0013654
Physical Location & Seq
Reverse (-)
18415387 .. 18418505
3119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0116800.1

Sequence Viewer

Length: 867 bp
ATGAACCCCTCAAACCTCCTCCCTACCCAGAATCTAACGATGGGCTGTCCAGTCCTCGACCGCTGCCTCGGCGGCGGAATCCCCTGCAACTCCCTCACGGAGCTCGTAGCCGAGAGCAGCTGCGGCAAGACCCAATTCTGCCTCCAACTCACTCTCTTCGCTCAGCTCCCTCCTTCCCACGGCGGCCTCTCCGCCTCCTCTCTTTACCTCCACACAGAATTCCCTTTCCCCTTTCGCCGCCTCCGCCACCTCTCCCACTCCTTCCGCTCCTCACACGCGAATCTTATCTTCGCCAACCCTTGTGAAGATGTATACGTTCACGCTGTACATGATGCACACCACCTGCTCGACATAATGCCCAAGATAGAGTGCTTTGTTGCGAGCAGGAAAACCCGGCTGCCTGTGAGGCTAATTGTGATTGATTCCATTGCCGCACTATTTCGCAGCGAATTTGGCAACAACCCTTTGGATCTTAAGCGGAGGTCCTTCCTGTTCTTCGAGATTTCCGGGATGCTGAAGTTGTTGGCGAGAAAGTACAGCTTGGCGGTGGTGGTGACGAACCAGGTGGTTGATTTTATGGGGGAAGTAGAGGGGATAAATGGGATGAGAGTTGGGAATTTGAGCTCCTTGCATTCATCCGGAAGACGGGTTTGTTCTGCTTTGGGATTAGCTTGGTCACATTGCGTGAATTCGAGGTTGTTCTTGTCTAGAAATGAGGAGATTGTTGGGAGAGAAAATGATGGGTTGGAGGATGATCCGTGCAGGCAAACAAGAAGGCGACTTGATGTTGTTTTTGCTCCTCATTTGCCGCCATCATCTTGTGAGTTTGTAATCACAAAGCAAGGGGTGTTTGGAGTTGACAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

288

Amino Acids

32.06

Weight (kDa)

8.52

Isoelectric Point (pI)

52.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad51 PF08423 11 - 191 5.4e-26 Rad51
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 351
Acc36I ACCTGC 1 cut(s) 351
AccBSI CCGCTC 1 cut(s) 267
AccI GTMKAC 1 cut(s) 312
AccII CGCG 1 cut(s) 278
AccIII TCCGGA 1 cut(s) 638
AclWI GGATC 2 cut(s) 477, 749
AcsI RAATTY 4 cut(s) 218, 449, 616, 688
AcuI CTGAAG 1 cut(s) 536
AfaI GTAC 2 cut(s) 327, 536
AfiI CCNNNNNNNGG 2 cut(s) 179, 645
AflII CTTAAG 1 cut(s) 473
AjnI CCWGG 1 cut(s) 561
AluBI AGCT 6 cut(s) 103, 120, 166, 540, 624, 671
AluI AGCT 6 cut(s) 103, 120, 166, 540, 624, 671
Alw21I GWGCWC 2 cut(s) 105, 626
AlwI GGATC 2 cut(s) 477, 749
Aor13HI TCCGGA 1 cut(s) 638
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 5 cut(s) 63, 117, 120, 397, 444
ApoI RAATTY 4 cut(s) 218, 449, 616, 688
AspS9I GGNCC 1 cut(s) 483
AsuC2I CCSGG 2 cut(s) 394, 508
AsuHPI GGTGA 1 cut(s) 565
AvaII GGWCC 1 cut(s) 483
BanII GRGCYC 2 cut(s) 105, 626
BbsI GAAGAC 1 cut(s) 649
Bbv12I GWGCWC 2 cut(s) 105, 626
BbvI GCAGC 5 cut(s) 50, 107, 129, 384, 456
BccI CCATC 3 cut(s) 34, 734, 820
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 563
BcnI CCSGG 2 cut(s) 394, 508
BfaI CTAG 1 cut(s) 708
BfrI CTTAAG 1 cut(s) 473
BfuAI ACCTGC 1 cut(s) 351
BglI GCCNNNNNGGC 2 cut(s) 72, 406
BlpI GCTNAGC 1 cut(s) 162
Bme1390I CCNGG 3 cut(s) 394, 508, 563
Bme18I GGWCC 1 cut(s) 483
BmgT120I GGNCC 1 cut(s) 483
BmrFI CCNGG 3 cut(s) 394, 508, 563
BmsI GCATC 2 cut(s) 322, 501
BpiI GAAGAC 1 cut(s) 649
Bpu1102I GCTNAGC 1 cut(s) 162
BpuMI CCSGG 2 cut(s) 394, 508
BsaJI CCNNGG 2 cut(s) 67, 178
BsaWI WCCGGW 1 cut(s) 638
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 645
Bse1I ACTGG 1 cut(s) 50
Bse3DI GCAATG 2 cut(s) 426, 679
BseAI TCCGGA 1 cut(s) 638
BseBI CCWGG 1 cut(s) 563
BseDI CCNNGG 2 cut(s) 67, 178
BseGI GGATG 4 cut(s) 516, 609, 635, 757
BseLI CCNNNNNNNGG 2 cut(s) 179, 645
BseMI GCAATG 2 cut(s) 426, 679
BseMII CTCAG 1 cut(s) 176
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 5 cut(s) 8, 187, 259, 731, 789
BseXI GCAGC 5 cut(s) 50, 107, 129, 384, 456
BsgI GTGCAG 1 cut(s) 781
Bsh1236I CGCG 1 cut(s) 278
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 1 cut(s) 186
BsiEI CGRYCG 1 cut(s) 61
BsiHKAI GWGCWC 2 cut(s) 105, 626
BsiSI CCGG 3 cut(s) 394, 507, 639
BslI CCNNNNNNNGG 2 cut(s) 179, 645
BsmI GAATGC 1 cut(s) 631
BsnI GGCC 1 cut(s) 186
Bsp1286I GDGCHC 2 cut(s) 105, 626
Bsp13I TCCGGA 1 cut(s) 638
Bsp1407I TGTACA 1 cut(s) 325
Bsp143I GATC 2 cut(s) 469, 754
Bsp1720I GCTNAGC 1 cut(s) 162
BspANI GGCC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 175
BspEI TCCGGA 1 cut(s) 638
BspFNI CGCG 1 cut(s) 278
BspMI ACCTGC 1 cut(s) 351
BspPI GGATC 2 cut(s) 477, 749
BspTI CTTAAG 1 cut(s) 473
BsrBI CCGCTC 1 cut(s) 267
BsrDI GCAATG 2 cut(s) 426, 679
BsrGI TGTACA 1 cut(s) 325
BsrI ACTGG 1 cut(s) 50
BssECI CCNNGG 2 cut(s) 67, 178
BssMI GATC 2 cut(s) 469, 754
BssNAI GTATAC 1 cut(s) 313
Bst1107I GTATAC 1 cut(s) 313
Bst2UI CCWGG 1 cut(s) 563
Bst6I CTCTTC 1 cut(s) 161
BstAFI CTTAAG 1 cut(s) 473
BstAUI TGTACA 1 cut(s) 325
BstC8I GCNNGC 2 cut(s) 382, 764
BstDEI CTNAG 1 cut(s) 162
BstDSI CCRYGG 1 cut(s) 178
BstF5I GGATG 4 cut(s) 516, 609, 635, 757
BstFNI CGCG 1 cut(s) 278
BstKTI GATC 2 cut(s) 472, 757
BstMBI GATC 2 cut(s) 469, 754
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 6 cut(s) 69, 72, 123, 243, 406, 453
BstNI CCWGG 1 cut(s) 563
BstSCI CCNGG 3 cut(s) 392, 506, 561
BstUI CGCG 1 cut(s) 278
BstV1I GCAGC 5 cut(s) 50, 107, 129, 384, 456
BstV2I GAAGAC 1 cut(s) 649
BstX2I RGATCY 1 cut(s) 469
BstYI RGATCY 1 cut(s) 469
BstZ17I GTATAC 1 cut(s) 313
BsuRI GGCC 1 cut(s) 186
BtgI CCRYGG 1 cut(s) 178
BtsCI GGATG 4 cut(s) 516, 609, 635, 757
BveI ACCTGC 1 cut(s) 351
Cac8I GCNNGC 2 cut(s) 382, 764
Cfr13I GGNCC 1 cut(s) 483
CsiI ACCWGGT 1 cut(s) 561
Csp6I GTAC 2 cut(s) 326, 535
CviAII CATG 1 cut(s) 329
CviQI GTAC 2 cut(s) 326, 535
DdeI CTNAG 1 cut(s) 162
DpnI GATC 2 cut(s) 471, 756
DpnII GATC 2 cut(s) 469, 754
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
EciI GGCGGA 3 cut(s) 90, 181, 233
Ecl136II GAGCTC 2 cut(s) 103, 624
Eco24I GRGCYC 2 cut(s) 105, 626
Eco47I GGWCC 1 cut(s) 483
Eco53kI GAGCTC 2 cut(s) 103, 624
Eco57I CTGAAG 1 cut(s) 536
EcoICRI GAGCTC 2 cut(s) 103, 624
EcoO109I RGGNCCY 1 cut(s) 483
EcoRI GAATTC 2 cut(s) 218, 688
EcoRII CCWGG 1 cut(s) 561
EcoT38I GRGCYC 2 cut(s) 105, 626
FaeI CATG 1 cut(s) 332
FaiI YATR 4 cut(s) 313, 330, 353, 578
FalI AAGNNNNNCTT 2 cut(s) 524, 556
FatI CATG 1 cut(s) 328
FblI GTMKAC 1 cut(s) 312
FokI GGATG 4 cut(s) 523, 616, 622, 764
FriOI GRGCYC 2 cut(s) 105, 626
FspBI CTAG 1 cut(s) 708
HaeIII GGCC 1 cut(s) 186
HapII CCGG 3 cut(s) 394, 507, 639
Hin1II CATG 1 cut(s) 332
HincII GTYRAC 1 cut(s) 859
HindII GTYRAC 1 cut(s) 859
HinfI GANTC 4 cut(s) 31, 78, 280, 422
HpaII CCGG 3 cut(s) 394, 507, 639
HphI GGTGA 1 cut(s) 565
Hpy166II GTNNAC 3 cut(s) 313, 319, 859
Hpy188III TCNNGA 3 cut(s) 499, 639, 708
Hpy8I GTNNAC 3 cut(s) 313, 319, 859
HpyAV CCTTC 4 cut(s) 183, 271, 496, 768
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 4 cut(s) 87, 335, 631, 762
HpyF10VI GCNNNNNNNGC 6 cut(s) 69, 72, 123, 243, 406, 453
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 1 cut(s) 332
Kpn2I TCCGGA 1 cut(s) 638
Kzo9I GATC 2 cut(s) 469, 754
LmnI GCTCC 5 cut(s) 100, 171, 272, 629, 802
Lsp1109I GCAGC 5 cut(s) 50, 107, 129, 384, 456
LweI GCATC 2 cut(s) 322, 501
MabI ACCWGGT 1 cut(s) 561
MaeI CTAG 1 cut(s) 708
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 553, 675
MalI GATC 2 cut(s) 471, 756
MbiI CCGCTC 1 cut(s) 267
MboI GATC 2 cut(s) 469, 754
MboII GAAGA 5 cut(s) 148, 280, 317, 487, 654
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 2 cut(s) 105, 626
MluCI AATT 6 cut(s) 134, 218, 411, 449, 616, 688
MmeI TCCRAC 2 cut(s) 169, 726
MroI TCCGGA 1 cut(s) 638
MseI TTAA 1 cut(s) 474
MspA1I CMGCKG 2 cut(s) 63, 120
MspCI CTTAAG 1 cut(s) 473
MspI CCGG 3 cut(s) 394, 507, 639
MspR9I CCNGG 3 cut(s) 394, 508, 563
Mva1269I GAATGC 1 cut(s) 631
MvaI CCWGG 1 cut(s) 563
MvnI CGCG 1 cut(s) 278
MwoI GCNNNNNNNGC 6 cut(s) 69, 72, 123, 243, 406, 453
NciI CCSGG 2 cut(s) 394, 508
NdeII GATC 2 cut(s) 469, 754
NlaIII CATG 1 cut(s) 332
NmeAIII GCCGAG 2 cut(s) 48, 136
NmuCI GTSAC 2 cut(s) 553, 675
PaqCI CACCTGC 1 cut(s) 351
PctI GAATGC 1 cut(s) 631
PfeI GAWTC 4 cut(s) 31, 78, 280, 422
PfoI TCCNGGA 1 cut(s) 506
PpuMI RGGWCCY 1 cut(s) 483
Psp124BI GAGCTC 2 cut(s) 105, 626
Psp5II RGGWCCY 1 cut(s) 483
Psp6I CCWGG 1 cut(s) 561
PspGI CCWGG 1 cut(s) 561
PspPI GGNCC 1 cut(s) 483
PspPPI RGGWCCY 1 cut(s) 483
PsuI RGATCY 1 cut(s) 469
PvuII CAGCTG 1 cut(s) 120
RsaI GTAC 2 cut(s) 327, 536
RsaNI GTAC 2 cut(s) 326, 535
SacI GAGCTC 2 cut(s) 105, 626
SaqAI TTAA 1 cut(s) 474
Sau3AI GATC 2 cut(s) 469, 754
Sau96I GGNCC 1 cut(s) 483
ScrFI CCNGG 3 cut(s) 394, 508, 563
SduI GDGCHC 2 cut(s) 105, 626
SexAI ACCWGGT 1 cut(s) 561
SfaNI GCATC 2 cut(s) 322, 501
SinI GGWCC 1 cut(s) 483
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
Sse9I AATT 6 cut(s) 134, 218, 411, 449, 616, 688
SspMI CTAG 1 cut(s) 708
SstI GAGCTC 2 cut(s) 105, 626
StyD4I CCNGG 3 cut(s) 392, 506, 561
TaiI ACGT 1 cut(s) 318
TaqI TCGA 4 cut(s) 57, 348, 498, 692
TasI AATT 6 cut(s) 134, 218, 411, 449, 616, 688
TatI WGTACW 2 cut(s) 325, 534
TauI GCSGC 6 cut(s) 75, 126, 186, 240, 434, 811
TfiI GAWTC 4 cut(s) 31, 78, 280, 422
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TseFI GTSAC 2 cut(s) 553, 675
TseI GCWGC 5 cut(s) 63, 117, 120, 397, 444
Tsp45I GTSAC 2 cut(s) 553, 675
TspDTI ATGAA 2 cut(s) 17, 624
TspGWI ACGGA 2 cut(s) 113, 747
Vha464I CTTAAG 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 483
XapI RAATTY 4 cut(s) 218, 449, 616, 688
XbaI TCTAGA 1 cut(s) 707
XmiI GTMKAC 1 cut(s) 312
XspI CTAG 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.