Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008996

Physical Location & Seq

Genomic Coordinates Reverse (-)

17301245 .. 17310455

Gene Structure 9211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g13780.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGCGGGCGTATCTCTGAAGTGCGGGGACTGTGGGGCTCTCCTCAGGTCTGTCGAGGAAGCCCAAGAGCACGCCGAGCTCACCTCCCACTCCAACTTCGCCGAGTCCACCGAGCCTGTTCTCAACCTCGTCTGCTCTACTTGCGGCAAACCATGCCGATCCAAAACTGAAAGTGATCTGCACACCAAAAGAACCGGGCACACTGAGTTTGCTGATAAGACTGCGGATGCAGCAAAGCCGATTAGTTTGGAGGTTCCGAAGGTGGCTTCTTCGGAGTCTGAAGATGTTGCTGCACCTAGCCAGACCGAAGAAATGGTAGTTCCCGAGGTCGACAAAAATTTGCTTCAGGAACTAGAAGGAATGGGATTTTCAATAGAGCGGGCAACCCGTGCCCTTCACTATTCTGGTAATGCTAGCCTGGAGGCTGCAGTCAATTGGGTAGTTGAACATGAGAATGATATGGACATTGATGAGATGCCTATGGTACCAGTCAACTCTAAAGTTGAGGCTCCAAAACCTTCTCTCACACCAGAGCAATTGAAAGCCAAGCAACATGAGCTTAGGGAGAAGGCACGGAAGAAAAAAGAAGAAGAAGAGAAGAGAATGGAAAGAGAAAGAGAAAAGGAGAGGATTCGAGTGGGCAAGGAACTCCTAGAAGCGAAGAGGATAGAAGAAGATAATGAAAGAAAACGGATTTTGGCCTTAAGGAAAGCTGAGAAAGAAGAAGAGAAAAGAGCCAGGGAGAGGATTCGTCAAAAACTGGAAGAAGATAAGGCAGAAAGGAGGAGGAAACTTGGTTTGCCACCAGAAGATCCTTCAACTACAAAACCATCTGCTCCGGTCGTAGAAGAGAAAAAGATGTCATTGCCAGTTAGGCCTGCTACTAAAGCAGAGCAAATGAGAGAGTGTTTGCGATCTCTCAAGCAGAACCATAAGGAGGATGACGCCAAAGTAAAGAGAGCATTCCAGACTCTTCTAACTTTTGTAGGGAATGTTGTGAAAAATCCTGATGAGGAGAAATTCAGAAAAATAAGACTCACTAACCAACCTTTCCAGGATAGGGTTGGTTCATTGACGGGAGGCATTCAGTTTCTTGAGCTGTGTGGATTTGAGAAAATGGAAGGTGGTGAGTTCTTGTTTCTCGCCCGAGACAAGGTTGACATGGCAGTACTCCATTCAGCTGGGTCTGAGATAGACTCTGCAATAAAGAATCCCTTCTTTGGTGTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUB UBA

Protein Analysis

411

Amino Acids

46.32

Weight (kDa)

6.01

Isoelectric Point (pI)

57.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_OTU1_C	PF24560	3 - 35	1.9e-10	Ubiquitin thioesterase OTU1, C-terminal C2H2-type zinc finger
UBA_7	PF22562	111 - 158	4.3e-17	UBA-like domain
UBA	PF00627	115 - 146	1.2e-06	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04850 AT1G04850
fragaria_vesca	FvH4_4g13780 FvH4_4g13780 FvH4_4g13780
malus_domestica	MD04G1012000.v1.1 MD13G1284100.v1.1 MD13G1284200.v1.1
prunus_persica	Prupe.1G010500_v2.0.a1 Prupe.1G010500_v2.0.a1
pyrus_communis	pycom04g00960 pycom420g01260
rosa_chinensis	RchiOBHm_Chr4g0414661
rosa_laevigata	RLG00000008127
rosa_multiflora	Rmu_sc0001192.1_g000017 Rmu_sc0006138.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358470
rosa_rugosa	Rorug04G0129300
rosa_samantha	Rh4AG187600 Rh4BG186400 Rh4CG199900
rosa_wichuraiana	Rw4G016040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	484
AccB1I	GGYRCC	1 cut(s)	484
AccBSI	CCGCTC	1 cut(s)	379
AccI	GTMKAC	1 cut(s)	330
AciI	CCGC	5 cut(s)	5, 24, 144, 224, 379
AclWI	GGATC	2 cut(s)	153, 806
AcsI	RAATTY	2 cut(s)	337, 1019
AcuI	CTGAAG	3 cut(s)	38, 300, 329
AcyI	GRCGYC	1 cut(s)	945
AfaI	GTAC	2 cut(s)	486, 1170
AfiI	CCNNNNNNNGG	5 cut(s)	744, 937, 1060, 1153, 1220
AflII	CTTAAG	1 cut(s)	703
AgsI	TTSAA	4 cut(s)	372, 446, 541, 819
AjnI	CCWGG	3 cut(s)	417, 737, 1053
AluBI	AGCT	5 cut(s)	79, 559, 713, 1099, 1181
AluI	AGCT	5 cut(s)	79, 559, 713, 1099, 1181
Alw21I	GWGCWC	2 cut(s)	72, 81
Alw26I	GTCTC	1 cut(s)	1143
AlwI	GGATC	2 cut(s)	153, 806
Ama87I	CYCGRG	2 cut(s)	323, 1146
AoxI	GGCC	2 cut(s)	699, 875
ApeKI	GCWGC	3 cut(s)	230, 290, 425
ApoI	RAATTY	2 cut(s)	337, 1019
Asp700I	GAANNNNTTC	1 cut(s)	1214
Asp718I	GGTACC	1 cut(s)	484
AsuC2I	CCSGG	1 cut(s)	196
AsuHPI	GGTGA	2 cut(s)	73, 1139
AsuNHI	GCTAGC	1 cut(s)	413
AvaI	CYCGRG	2 cut(s)	323, 1146
AxyI	CCTNAGG	1 cut(s)	44
BaeGI	GKGCMC	2 cut(s)	201, 394
BanI	GGYRCC	1 cut(s)	484
BanII	GRGCYC	2 cut(s)	40, 81
Bbv12I	GWGCWC	2 cut(s)	72, 81
BbvI	GCAGC	3 cut(s)	242, 277, 412
BccI	CCATC	1 cut(s)	838
BciT130I	CCWGG	3 cut(s)	419, 739, 1055
BcnI	CCSGG	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	1143
BfaI	CTAG	4 cut(s)	297, 353, 414, 653
BfmI	CTRYAG	1 cut(s)	426
BfrI	CTTAAG	1 cut(s)	703
BglI	GCCNNNNNGGC	1 cut(s)	874
BisI	GCNGC	4 cut(s)	145, 231, 291, 426
BlsI	GCNGC	4 cut(s)	146, 232, 292, 427
BmcAI	AGTACT	1 cut(s)	1170
Bme1390I	CCNGG	4 cut(s)	196, 419, 739, 1055
BmeT110I	CYCGRG	2 cut(s)	323, 1146
BmiI	GGNNCC	3 cut(s)	255, 486, 510
BmrFI	CCNGG	4 cut(s)	196, 419, 739, 1055
BmsI	GCATC	2 cut(s)	217, 465
BmtI	GCTAGC	1 cut(s)	417
BplI	GAGNNNNNCTC	4 cut(s)	68, 100, 1181, 1213
BpmI	CTGGAG	1 cut(s)	440
Bpu10I	CCTNAGC	1 cut(s)	560
BpuEI	CTTGAG	2 cut(s)	905, 1115
BpuMI	CCSGG	1 cut(s)	196
BsaHI	GRCGYC	1 cut(s)	945
BsaJI	CCNNGG	2 cut(s)	324, 738
BsaWI	WCCGGW	1 cut(s)	838
Bsc4I	CCNNNNNNNGG	5 cut(s)	744, 937, 1060, 1153, 1220
Bse1I	ACTGG	3 cut(s)	488, 765, 869
Bse21I	CCTNAGG	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	863
BseBI	CCWGG	3 cut(s)	419, 739, 1055
BseDI	CCNNGG	2 cut(s)	324, 738
BseGI	GGATG	2 cut(s)	232, 946
BseLI	CCNNNNNNNGG	5 cut(s)	744, 937, 1060, 1153, 1220
BseMI	GCAATG	1 cut(s)	863
BseMII	CTCAG	4 cut(s)	58, 195, 705, 1179
BseNI	ACTGG	3 cut(s)	488, 765, 869
BseRI	GAGGAG	3 cut(s)	32, 799, 1028
BseSI	GKGCMC	2 cut(s)	201, 394
BseXI	GCAGC	3 cut(s)	242, 277, 412
BseYI	CCCAGC	1 cut(s)	1181
BsgI	GTGCAG	2 cut(s)	164, 276
Bsh1285I	CGRYCG	1 cut(s)	843
BshFI	GGCC	2 cut(s)	701, 877
BshNI	GGYRCC	1 cut(s)	484
BsiEI	CGRYCG	1 cut(s)	843
BsiHKAI	GWGCWC	2 cut(s)	72, 81
BsiHKCI	CYCGRG	2 cut(s)	323, 1146
BsiSI	CCGG	2 cut(s)	195, 839
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	5 cut(s)	744, 937, 1060, 1153, 1220
BsmAI	GTCTC	1 cut(s)	1143
BsmFI	GGGAC	1 cut(s)	41
BsmI	GAATGC	2 cut(s)	962, 1083
BsnI	GGCC	2 cut(s)	701, 877
BsoBI	CYCGRG	2 cut(s)	323, 1146
Bsp1286I	GDGCHC	5 cut(s)	40, 72, 81, 201, 394
Bsp143I	GATC	4 cut(s)	158, 175, 811, 914
BspACI	CCGC	5 cut(s)	5, 24, 144, 224, 379
BspANI	GGCC	2 cut(s)	701, 877
BspCNI	CTCAG	4 cut(s)	57, 196, 706, 1180
BspLI	GGNNCC	3 cut(s)	255, 486, 510
BspMAI	CTGCAG	1 cut(s)	430
BspOI	GCTAGC	1 cut(s)	417
BspPI	GGATC	2 cut(s)	153, 806
BspT107I	GGYRCC	1 cut(s)	484
BspTI	CTTAAG	1 cut(s)	703
BsrBI	CCGCTC	1 cut(s)	379
BsrDI	GCAATG	1 cut(s)	863
BsrI	ACTGG	3 cut(s)	488, 765, 869
BssECI	CCNNGG	2 cut(s)	324, 738
BssMI	GATC	4 cut(s)	158, 175, 811, 914
BssNI	GRCGYC	1 cut(s)	945
Bst2UI	CCWGG	3 cut(s)	419, 739, 1055
Bst4CI	ACNGT	1 cut(s)	32
Bst6I	CTCTTC	6 cut(s)	588, 593, 656, 720, 843, 978
BstACI	GRCGYC	1 cut(s)	945
BstAFI	CTTAAG	1 cut(s)	703
BstAPI	GCANNNNNTGC	2 cut(s)	153, 389
BstC8I	GCNNGC	5 cut(s)	7, 72, 381, 415, 879
BstDEI	CTNAG	5 cut(s)	44, 204, 560, 714, 1188
BstF5I	GGATG	2 cut(s)	232, 946
BstKTI	GATC	4 cut(s)	161, 178, 814, 917
BstMAI	GTCTC	1 cut(s)	1143
BstMBI	GATC	4 cut(s)	158, 175, 811, 914
BstMCI	CGRYCG	1 cut(s)	843
BstMWI	GCNNNNNNNGC	8 cut(s)	76, 141, 153, 230, 389, 556, 874, 887
BstNI	CCWGG	3 cut(s)	419, 739, 1055
BstSCI	CCNGG	4 cut(s)	194, 417, 737, 1053
BstSFI	CTRYAG	1 cut(s)	426
BstSLI	GKGCMC	2 cut(s)	201, 394
BstV1I	GCAGC	3 cut(s)	242, 277, 412
BstX2I	RGATCY	1 cut(s)	811
BstXI	CCANNNNNNTGG	1 cut(s)	1181
BstYI	RGATCY	1 cut(s)	811
Bsu36I	CCTNAGG	1 cut(s)	44
BsuRI	GGCC	2 cut(s)	701, 877
BtsCI	GGATG	2 cut(s)	232, 946
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	5 cut(s)	7, 72, 381, 415, 879
CseI	GACGC	1 cut(s)	953
Csp6I	GTAC	2 cut(s)	485, 1169
CviAII	CATG	4 cut(s)	153, 449, 554, 1162
CviQI	GTAC	2 cut(s)	485, 1169
DdeI	CTNAG	5 cut(s)	44, 204, 560, 714, 1188
DpnI	GATC	4 cut(s)	160, 177, 813, 916
DpnII	GATC	4 cut(s)	158, 175, 811, 914
Eam1104I	CTCTTC	6 cut(s)	588, 593, 656, 720, 843, 978
EarI	CTCTTC	6 cut(s)	588, 593, 656, 720, 843, 978
Ecl136II	GAGCTC	1 cut(s)	79
Eco147I	AGGCCT	1 cut(s)	877
Eco24I	GRGCYC	2 cut(s)	40, 81
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	3 cut(s)	38, 300, 329
Eco81I	CCTNAGG	1 cut(s)	44
Eco88I	CYCGRG	2 cut(s)	323, 1146
EcoICRI	GAGCTC	1 cut(s)	79
EcoRII	CCWGG	3 cut(s)	417, 737, 1053
EcoT38I	GRGCYC	2 cut(s)	40, 81
FaeI	CATG	4 cut(s)	156, 452, 557, 1165
FaiI	YATR	7 cut(s)	154, 450, 461, 482, 555, 933, 1163
FalI	AAGNNNNNCTT	2 cut(s)	1199, 1231
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	4 cut(s)	152, 448, 553, 1161
FauI	CCCGC	2 cut(s)	17, 372
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	4 cut(s)	145, 231, 291, 426
FokI	GGATG	2 cut(s)	239, 953
FriOI	GRGCYC	2 cut(s)	40, 81
Fsp4HI	GCNGC	4 cut(s)	145, 231, 291, 426
FspBI	CTAG	4 cut(s)	297, 353, 414, 653
GluI	GCNGC	4 cut(s)	145, 231, 291, 426
GsaI	CCCAGC	1 cut(s)	1185
GsuI	CTGGAG	1 cut(s)	440
HaeIII	GGCC	2 cut(s)	701, 877
HapII	CCGG	2 cut(s)	195, 839
HgaI	GACGC	1 cut(s)	953
Hin1I	GRCGYC	1 cut(s)	945
Hin1II	CATG	4 cut(s)	156, 452, 557, 1165
HincII	GTYRAC	3 cut(s)	331, 493, 1159
HindII	GTYRAC	3 cut(s)	331, 493, 1159
HinfI	GANTC	8 cut(s)	104, 275, 631, 748, 970, 1035, 1196, 1210
HpaII	CCGG	2 cut(s)	195, 839
HphI	GGTGA	2 cut(s)	73, 1139
Hpy166II	GTNNAC	4 cut(s)	108, 331, 493, 1159
Hpy188I	TCNGA	6 cut(s)	18, 258, 274, 280, 1025, 1189
Hpy188III	TCNNGA	5 cut(s)	323, 347, 967, 1007, 1094
Hpy8I	GTNNAC	4 cut(s)	108, 331, 493, 1159
HpyAV	CCTTC	8 cut(s)	253, 350, 404, 528, 562, 825, 1115, 1225
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4V	TGCA	5 cut(s)	181, 230, 293, 428, 1202
HpyF10VI	GCNNNNNNNGC	8 cut(s)	76, 141, 153, 230, 389, 556, 874, 887
HpyF3I	CTNAG	5 cut(s)	44, 204, 560, 714, 1188
Hsp92I	GRCGYC	1 cut(s)	945
Hsp92II	CATG	4 cut(s)	156, 452, 557, 1165
KpnI	GGTACC	1 cut(s)	488
Kzo9I	GATC	4 cut(s)	158, 175, 811, 914
LmnI	GCTCC	2 cut(s)	514, 841
Lsp1109I	GCAGC	3 cut(s)	242, 277, 412
LweI	GCATC	2 cut(s)	217, 465
MaeI	CTAG	4 cut(s)	297, 353, 414, 653
MalI	GATC	4 cut(s)	160, 177, 813, 916
MbiI	CCGCTC	1 cut(s)	379
MboI	GATC	4 cut(s)	158, 175, 811, 914
MfeI	CAATTG	2 cut(s)	433, 536
MflI	RGATCY	1 cut(s)	811
MhlI	GDGCHC	5 cut(s)	40, 72, 81, 201, 394
MluCI	AATT	4 cut(s)	337, 433, 536, 1019
MlyI	GAGTC	5 cut(s)	113, 284, 964, 1029, 1190
MmeI	TCCRAC	1 cut(s)	117
MroXI	GAANNNNTTC	1 cut(s)	1214
MseI	TTAA	1 cut(s)	704
MslI	CAYNNNNRTG	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	1181
MspCI	CTTAAG	1 cut(s)	703
MspI	CCGG	2 cut(s)	195, 839
MspR9I	CCNGG	4 cut(s)	196, 419, 739, 1055
MunI	CAATTG	2 cut(s)	433, 536
Mva1269I	GAATGC	2 cut(s)	962, 1083
MvaI	CCWGG	3 cut(s)	419, 739, 1055
MwoI	GCNNNNNNNGC	8 cut(s)	76, 141, 153, 230, 389, 556, 874, 887
NciI	CCSGG	1 cut(s)	196
NdeII	GATC	4 cut(s)	158, 175, 811, 914
NheI	GCTAGC	1 cut(s)	413
NlaIII	CATG	4 cut(s)	156, 452, 557, 1165
NlaIV	GGNNCC	3 cut(s)	255, 486, 510
NmeAIII	GCCGAG	2 cut(s)	100, 127
PceI	AGGCCT	1 cut(s)	877
PctI	GAATGC	2 cut(s)	962, 1083
PdmI	GAANNNNTTC	1 cut(s)	1214
PfeI	GAWTC	3 cut(s)	631, 748, 1210
PfoI	TCCNGGA	1 cut(s)	1053
PkrI	GCNGC	4 cut(s)	146, 232, 292, 427
PleI	GAGTC	5 cut(s)	112, 283, 964, 1029, 1190
PpsI	GAGTC	5 cut(s)	112, 283, 964, 1029, 1190
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	3 cut(s)	417, 737, 1053
PspFI	CCCAGC	1 cut(s)	1181
PspGI	CCWGG	3 cut(s)	417, 737, 1053
PspN4I	GGNNCC	3 cut(s)	255, 486, 510
PstI	CTGCAG	1 cut(s)	430
PsuI	RGATCY	1 cut(s)	811
PvuII	CAGCTG	1 cut(s)	1181
RsaI	GTAC	2 cut(s)	486, 1170
RsaNI	GTAC	2 cut(s)	485, 1169
RseI	CAYNNNNRTG	1 cut(s)	453
SacI	GAGCTC	1 cut(s)	81
SalI	GTCGAC	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	704
SatI	GCNGC	4 cut(s)	145, 231, 291, 426
Sau3AI	GATC	4 cut(s)	158, 175, 811, 914
ScaI	AGTACT	1 cut(s)	1170
SchI	GAGTC	5 cut(s)	113, 284, 964, 1029, 1190
ScrFI	CCNGG	4 cut(s)	196, 419, 739, 1055
SduI	GDGCHC	5 cut(s)	40, 72, 81, 201, 394
SfaNI	GCATC	2 cut(s)	217, 465
SfcI	CTRYAG	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	3 cut(s)	703, 920, 1094
SmoI	CTYRAG	3 cut(s)	703, 920, 1094
Sse9I	AATT	4 cut(s)	337, 433, 536, 1019
SseBI	AGGCCT	1 cut(s)	877
SsiI	CCGC	5 cut(s)	5, 24, 144, 224, 379
SspMI	CTAG	4 cut(s)	297, 353, 414, 653
SstI	GAGCTC	1 cut(s)	81
StuI	AGGCCT	1 cut(s)	877
StyD4I	CCNGG	4 cut(s)	194, 417, 737, 1053
TaaI	ACNGT	1 cut(s)	32
TaqI	TCGA	3 cut(s)	54, 330, 634
TaqII	GACCGA	1 cut(s)	320
TasI	AATT	4 cut(s)	337, 433, 536, 1019
TatI	WGTACW	1 cut(s)	1168
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	3 cut(s)	631, 748, 1210
Tru1I	TTAA	1 cut(s)	704
Tru9I	TTAA	1 cut(s)	704
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	3 cut(s)	230, 290, 425
TspDTI	ATGAA	2 cut(s)	696, 1059
TspGWI	ACGGA	2 cut(s)	589, 706
TspRI	CASTG	1 cut(s)	208
Vha464I	CTTAAG	1 cut(s)	703
XapI	RAATTY	2 cut(s)	337, 1019
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1061
XmiI	GTMKAC	1 cut(s)	330
XmnI	GAANNNNTTC	1 cut(s)	1214
XspI	CTAG	4 cut(s)	297, 353, 414, 653
ZrmI	AGTACT	1 cut(s)	1170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.