Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001192.1

Orthogroup ID

OG0008996

Physical Location & Seq

Genomic Coordinates Reverse (-)

62115 .. 69789

Gene Structure 7675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001192.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

atggcgggcgtatctctcaagtgcggggactgtggggctctcctcaggtctgttgaggaagcccaagagcatgccgagctcacctcccactccaacttcgctgagtccaccgaggctgttctcaacctcgtctgctctacttgcggcaaaccatgccgatccaaaaccgaaagtgatctgcacaccaaaagaactgggcacaccgagtttgttgataagactgcggatgcagcgaaaccgataagtttggaggttccaaaggtgactgcttcagagtcggaagatgttgctgcaactagcccgaccgaagaaatggtagttccagaggtcgacaaaaatctgcttcaggaacttgaaggaatgggattttcaaaagagcgggcaacccgtgcacttcactattccggtaatgctagcctggaggctgctgtcaattgggtagttgaacatgagaatgatatggacatagatgagatgcctttggtaccagtcaactccaaagtggaggctccaaaaccttctctcacaccagagcaattgaaagccaagcaacatgagcttagggagaaggcccggaagaaaaaagaagaagaagagaagagaatggaaagagaaagagaaaaggcggaaaggaggaggaaacttggtttgccaccagaagatccttcaactacaaaaccttctgcacctgttgtagaagagaaaaagatgtcattgccagttaggcctgctactaaagcagagcaaatgagagagtgtttgcgatctcttaagcagaatcacaaggaggatgatgccaaagtaaagagagcattccagactcttttaacttttgtagggaatgttgtgaaaaatcctgatgaggagaaattcagaaaaataagactcactaaccaatctttccaggaaagggttggttcattgaggggaggcactcagtttcttgagttgtgtggatttgagaaaatggaaggcggtgagttcttgtttcttgctagagacaaggttgacatggcggtactccattcagctgggtctgagctagactctgcaataaagaatcccttctttggtgttttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUB UBA

Protein Analysis

360

Amino Acids

40.16

Weight (kDa)

5.87

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04850 AT1G04850
fragaria_vesca	FvH4_4g13780 FvH4_4g13780 FvH4_4g13780
malus_domestica	MD04G1012000.v1.1 MD13G1284100.v1.1 MD13G1284200.v1.1
prunus_persica	Prupe.1G010500_v2.0.a1 Prupe.1G010500_v2.0.a1
pyrus_communis	pycom04g00960 pycom420g01260
rosa_chinensis	RchiOBHm_Chr4g0414661
rosa_laevigata	RLG00000008127
rosa_multiflora	Rmu_sc0001192.1_g000017 Rmu_sc0006138.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358470
rosa_rugosa	Rorug04G0129300
rosa_samantha	Rh4AG187600 Rh4BG186400 Rh4CG199900
rosa_wichuraiana	Rw4G016040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	484
AccB1I	GGYRCC	1 cut(s)	484
AccBSI	CCGCTC	1 cut(s)	379
AccI	GTMKAC	1 cut(s)	330
AciI	CCGC	8 cut(s)	5, 24, 144, 224, 379, 626, 975, 1016
AclWI	GGATC	2 cut(s)	153, 656
AcsI	RAATTY	1 cut(s)	869
AcuI	CTGAAG	2 cut(s)	255, 329
AfaI	GTAC	2 cut(s)	486, 1020
AfiI	CCNNNNNNNGG	2 cut(s)	910, 1070
AflII	CTTAAG	1 cut(s)	770
AgsI	TTSAA	5 cut(s)	356, 372, 446, 541, 669
AjnI	CCWGG	2 cut(s)	417, 903
AluBI	AGCT	4 cut(s)	79, 559, 1031, 1042
AluI	AGCT	4 cut(s)	79, 559, 1031, 1042
Alw21I	GWGCWC	2 cut(s)	81, 394
Alw26I	GTCTC	1 cut(s)	993
Alw44I	GTGCAC	1 cut(s)	390
AlwI	GGATC	2 cut(s)	153, 656
AoxI	GGCC	2 cut(s)	570, 725
ApaLI	GTGCAC	1 cut(s)	390
ApeKI	GCWGC	3 cut(s)	230, 290, 425
ApoI	RAATTY	1 cut(s)	869
Asp700I	GAANNNNTTC	1 cut(s)	1064
Asp718I	GGTACC	1 cut(s)	484
AspS9I	GGNCC	1 cut(s)	571
AsuC2I	CCSGG	1 cut(s)	574
AsuHPI	GGTGA	3 cut(s)	73, 274, 989
AsuNHI	GCTAGC	1 cut(s)	413
AxyI	CCTNAGG	1 cut(s)	44
BaeGI	GKGCMC	2 cut(s)	201, 394
BanI	GGYRCC	1 cut(s)	484
BanII	GRGCYC	2 cut(s)	40, 81
Bbv12I	GWGCWC	2 cut(s)	81, 394
BbvI	GCAGC	3 cut(s)	242, 277, 412
BciT130I	CCWGG	2 cut(s)	419, 905
BcnI	CCSGG	1 cut(s)	574
BcoDI	GTCTC	1 cut(s)	993
BfaI	CTAG	4 cut(s)	297, 414, 996, 1043
BfrI	CTTAAG	1 cut(s)	770
BglI	GCCNNNNNGGC	1 cut(s)	724
BisI	GCNGC	4 cut(s)	145, 231, 291, 426
BlsI	GCNGC	4 cut(s)	146, 232, 292, 427
Bme1390I	CCNGG	3 cut(s)	419, 574, 905
BmgT120I	GGNCC	1 cut(s)	571
BmiI	GGNNCC	3 cut(s)	255, 486, 510
BmrFI	CCNGG	3 cut(s)	419, 574, 905
BmrI	ACTGGG	1 cut(s)	204
BmsI	GCATC	3 cut(s)	217, 465, 784
BmtI	GCTAGC	1 cut(s)	417
BmuI	ACTGGG	1 cut(s)	204
BplI	GAGNNNNNCTC	4 cut(s)	68, 100, 1031, 1063
BpmI	CTGGAG	1 cut(s)	440
Bpu10I	CCTNAGC	1 cut(s)	560
BpuEI	CTTGAG	1 cut(s)	965
BpuMI	CCSGG	1 cut(s)	574
BsaJI	CCNNGG	1 cut(s)	111
BsaWI	WCCGGW	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	2 cut(s)	910, 1070
Bse1I	ACTGG	3 cut(s)	199, 488, 719
Bse21I	CCTNAGG	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	713
BseBI	CCWGG	2 cut(s)	419, 905
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	2 cut(s)	232, 796
BseLI	CCNNNNNNNGG	2 cut(s)	910, 1070
BseMI	GCAATG	1 cut(s)	713
BseMII	CTCAG	4 cut(s)	58, 93, 950, 1029
BseNI	ACTGG	3 cut(s)	199, 488, 719
BseRI	GAGGAG	3 cut(s)	32, 649, 878
BseSI	GKGCMC	2 cut(s)	201, 394
BseXI	GCAGC	3 cut(s)	242, 277, 412
BseYI	CCCAGC	1 cut(s)	1031
BsgI	GTGCAG	2 cut(s)	164, 669
Bsh1285I	CGRYCG	1 cut(s)	306
BshFI	GGCC	2 cut(s)	572, 727
BshNI	GGYRCC	1 cut(s)	484
BsiEI	CGRYCG	1 cut(s)	306
BsiHKAI	GWGCWC	2 cut(s)	81, 394
BsiSI	CCGG	2 cut(s)	405, 574
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	2 cut(s)	910, 1070
BsmAI	GTCTC	1 cut(s)	993
BsmFI	GGGAC	1 cut(s)	41
BsmI	GAATGC	1 cut(s)	812
BsnI	GGCC	2 cut(s)	572, 727
Bsp1286I	GDGCHC	4 cut(s)	40, 81, 201, 394
Bsp143I	GATC	4 cut(s)	158, 175, 661, 764
BspACI	CCGC	8 cut(s)	5, 24, 144, 224, 379, 626, 975, 1016
BspANI	GGCC	2 cut(s)	572, 727
BspCNI	CTCAG	4 cut(s)	57, 94, 949, 1030
BspLI	GGNNCC	3 cut(s)	255, 486, 510
BspOI	GCTAGC	1 cut(s)	417
BspPI	GGATC	2 cut(s)	153, 656
BspT107I	GGYRCC	1 cut(s)	484
BspTI	CTTAAG	1 cut(s)	770
BsrBI	CCGCTC	1 cut(s)	379
BsrDI	GCAATG	1 cut(s)	713
BsrI	ACTGG	3 cut(s)	199, 488, 719
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	4 cut(s)	158, 175, 661, 764
Bst2UI	CCWGG	2 cut(s)	419, 905
Bst4CI	ACNGT	1 cut(s)	32
Bst6I	CTCTTC	3 cut(s)	588, 593, 693
BstAFI	CTTAAG	1 cut(s)	770
BstAPI	GCANNNNNTGC	2 cut(s)	153, 389
BstC8I	GCNNGC	5 cut(s)	7, 72, 381, 415, 729
BstDEI	CTNAG	5 cut(s)	44, 102, 560, 936, 1038
BstF5I	GGATG	2 cut(s)	232, 796
BstKTI	GATC	4 cut(s)	161, 178, 664, 767
BstMAI	GTCTC	1 cut(s)	993
BstMBI	GATC	4 cut(s)	158, 175, 661, 764
BstMCI	CGRYCG	1 cut(s)	306
BstMWI	GCNNNNNNNGC	8 cut(s)	76, 141, 153, 230, 389, 556, 724, 737
BstNI	CCWGG	2 cut(s)	419, 905
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	3 cut(s)	417, 572, 903
BstSLI	GKGCMC	2 cut(s)	201, 394
BstV1I	GCAGC	3 cut(s)	242, 277, 412
BstX2I	RGATCY	1 cut(s)	661
BstXI	CCANNNNNNTGG	1 cut(s)	1031
BstYI	RGATCY	1 cut(s)	661
Bsu36I	CCTNAGG	1 cut(s)	44
BsuRI	GGCC	2 cut(s)	572, 727
BtsCI	GGATG	2 cut(s)	232, 796
Cac8I	GCNNGC	5 cut(s)	7, 72, 381, 415, 729
Cfr13I	GGNCC	1 cut(s)	571
Csp6I	GTAC	2 cut(s)	485, 1019
CviAII	CATG	5 cut(s)	71, 153, 449, 554, 1012
CviQI	GTAC	2 cut(s)	485, 1019
DdeI	CTNAG	5 cut(s)	44, 102, 560, 936, 1038
DpnI	GATC	4 cut(s)	160, 177, 663, 766
DpnII	GATC	4 cut(s)	158, 175, 661, 764
Eam1104I	CTCTTC	3 cut(s)	588, 593, 693
EarI	CTCTTC	3 cut(s)	588, 593, 693
EciI	GGCGGA	1 cut(s)	641
Ecl136II	GAGCTC	1 cut(s)	79
Eco147I	AGGCCT	1 cut(s)	727
Eco24I	GRGCYC	2 cut(s)	40, 81
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	2 cut(s)	255, 329
Eco81I	CCTNAGG	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	79
EcoRII	CCWGG	2 cut(s)	417, 903
EcoT38I	GRGCYC	2 cut(s)	40, 81
FaeI	CATG	5 cut(s)	74, 156, 452, 557, 1015
FaiI	YATR	7 cut(s)	72, 154, 450, 461, 467, 555, 1013
FalI	AAGNNNNNCTT	2 cut(s)	1049, 1081
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	5 cut(s)	70, 152, 448, 553, 1011
FauI	CCCGC	2 cut(s)	17, 372
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	4 cut(s)	145, 231, 291, 426
FokI	GGATG	2 cut(s)	239, 803
FriOI	GRGCYC	2 cut(s)	40, 81
Fsp4HI	GCNGC	4 cut(s)	145, 231, 291, 426
FspBI	CTAG	4 cut(s)	297, 414, 996, 1043
GluI	GCNGC	4 cut(s)	145, 231, 291, 426
GsaI	CCCAGC	1 cut(s)	1035
GsuI	CTGGAG	1 cut(s)	440
HaeIII	GGCC	2 cut(s)	572, 727
HapII	CCGG	2 cut(s)	405, 574
Hin1II	CATG	5 cut(s)	74, 156, 452, 557, 1015
HincII	GTYRAC	3 cut(s)	331, 493, 1009
HindII	GTYRAC	3 cut(s)	331, 493, 1009
HinfI	GANTC	7 cut(s)	104, 275, 778, 820, 885, 1046, 1060
HpaII	CCGG	2 cut(s)	405, 574
HphI	GGTGA	3 cut(s)	73, 274, 989
Hpy166II	GTNNAC	5 cut(s)	108, 331, 392, 493, 1009
Hpy188I	TCNGA	4 cut(s)	274, 280, 875, 1039
Hpy188III	TCNNGA	5 cut(s)	323, 347, 817, 857, 944
Hpy8I	GTNNAC	5 cut(s)	108, 331, 392, 493, 1009
HpyAV	CCTTC	7 cut(s)	350, 528, 562, 675, 690, 965, 1075
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4V	TGCA	6 cut(s)	181, 230, 293, 392, 686, 1052
HpyF10VI	GCNNNNNNNGC	8 cut(s)	76, 141, 153, 230, 389, 556, 724, 737
HpyF3I	CTNAG	5 cut(s)	44, 102, 560, 936, 1038
Hsp92II	CATG	5 cut(s)	74, 156, 452, 557, 1015
KpnI	GGTACC	1 cut(s)	488
Kzo9I	GATC	4 cut(s)	158, 175, 661, 764
LmnI	GCTCC	1 cut(s)	514
Lsp1109I	GCAGC	3 cut(s)	242, 277, 412
LweI	GCATC	3 cut(s)	217, 465, 784
MaeI	CTAG	4 cut(s)	297, 414, 996, 1043
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	4 cut(s)	160, 177, 663, 766
MbiI	CCGCTC	1 cut(s)	379
MboI	GATC	4 cut(s)	158, 175, 661, 764
MboII	GAAGA	9 cut(s)	293, 320, 589, 599, 602, 605, 610, 671, 710
MfeI	CAATTG	2 cut(s)	433, 536
MflI	RGATCY	1 cut(s)	661
MhlI	GDGCHC	4 cut(s)	40, 81, 201, 394
MluCI	AATT	3 cut(s)	433, 536, 869
MlyI	GAGTC	5 cut(s)	113, 284, 814, 879, 1040
MmeI	TCCRAC	2 cut(s)	117, 258
MroXI	GAANNNNTTC	1 cut(s)	1064
MseI	TTAA	2 cut(s)	771, 827
MslI	CAYNNNNRTG	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	1031
MspCI	CTTAAG	1 cut(s)	770
MspI	CCGG	2 cut(s)	405, 574
MspR9I	CCNGG	3 cut(s)	419, 574, 905
MunI	CAATTG	2 cut(s)	433, 536
Mva1269I	GAATGC	1 cut(s)	812
MvaI	CCWGG	2 cut(s)	419, 905
MwoI	GCNNNNNNNGC	8 cut(s)	76, 141, 153, 230, 389, 556, 724, 737
NciI	CCSGG	1 cut(s)	574
NdeII	GATC	4 cut(s)	158, 175, 661, 764
NheI	GCTAGC	1 cut(s)	413
NlaIII	CATG	5 cut(s)	74, 156, 452, 557, 1015
NlaIV	GGNNCC	3 cut(s)	255, 486, 510
NmeAIII	GCCGAG	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	262
NspI	RCATGY	1 cut(s)	74
PaeI	GCATGC	1 cut(s)	74
PceI	AGGCCT	1 cut(s)	727
PctI	GAATGC	1 cut(s)	812
PdmI	GAANNNNTTC	1 cut(s)	1064
PfeI	GAWTC	2 cut(s)	778, 1060
PfoI	TCCNGGA	1 cut(s)	903
PkrI	GCNGC	4 cut(s)	146, 232, 292, 427
PleI	GAGTC	5 cut(s)	112, 283, 814, 879, 1040
PpsI	GAGTC	5 cut(s)	112, 283, 814, 879, 1040
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	2 cut(s)	417, 903
PspFI	CCCAGC	1 cut(s)	1031
PspGI	CCWGG	2 cut(s)	417, 903
PspN4I	GGNNCC	3 cut(s)	255, 486, 510
PspPI	GGNCC	1 cut(s)	571
PsuI	RGATCY	1 cut(s)	661
PvuII	CAGCTG	1 cut(s)	1031
RsaI	GTAC	2 cut(s)	486, 1020
RsaNI	GTAC	2 cut(s)	485, 1019
RseI	CAYNNNNRTG	1 cut(s)	453
SacI	GAGCTC	1 cut(s)	81
SalI	GTCGAC	1 cut(s)	329
SaqAI	TTAA	2 cut(s)	771, 827
SatI	GCNGC	4 cut(s)	145, 231, 291, 426
Sau3AI	GATC	4 cut(s)	158, 175, 661, 764
Sau96I	GGNCC	1 cut(s)	571
SchI	GAGTC	5 cut(s)	113, 284, 814, 879, 1040
ScrFI	CCNGG	3 cut(s)	419, 574, 905
SduI	GDGCHC	4 cut(s)	40, 81, 201, 394
SfaNI	GCATC	3 cut(s)	217, 465, 784
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	3 cut(s)	17, 770, 944
SmoI	CTYRAG	3 cut(s)	17, 770, 944
SphI	GCATGC	1 cut(s)	74
Sse9I	AATT	3 cut(s)	433, 536, 869
SseBI	AGGCCT	1 cut(s)	727
SsiI	CCGC	8 cut(s)	5, 24, 144, 224, 379, 626, 975, 1016
SspMI	CTAG	4 cut(s)	297, 414, 996, 1043
SstI	GAGCTC	1 cut(s)	81
StuI	AGGCCT	1 cut(s)	727
StyD4I	CCNGG	3 cut(s)	417, 572, 903
TaaI	ACNGT	1 cut(s)	32
TaqI	TCGA	1 cut(s)	330
TaqII	GACCGA	1 cut(s)	320
TasI	AATT	3 cut(s)	433, 536, 869
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	2 cut(s)	778, 1060
Tru1I	TTAA	2 cut(s)	771, 827
Tru9I	TTAA	2 cut(s)	771, 827
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	3 cut(s)	230, 290, 425
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	1 cut(s)	909
Vha464I	CTTAAG	1 cut(s)	770
VneI	GTGCAC	1 cut(s)	390
XapI	RAATTY	1 cut(s)	869
XceI	RCATGY	1 cut(s)	74
XcmI	CCANNNNNNNNNTGG	1 cut(s)	911
XmiI	GTMKAC	1 cut(s)	330
XmnI	GAANNNNTTC	1 cut(s)	1064
XspI	CTAG	4 cut(s)	297, 414, 996, 1043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.