Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0008996

Physical Location & Seq

Genomic Coordinates Forward (+)

1347908 .. 1355873

Gene Structure 7966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1012000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGCGGGCGTATCGCTCAAGTGCGGCGATTGCGGGAGTCTGCTGAGGTCGGTGGAGGAAGCCCAAGAGCACGCCGAGCTCACCTCCCACTCCAACTTCTCTGAGTCAACCGAAGCTGTTCTCAACCTCGTCTGCTCCTCTTGCGGCAAACCATGCCGATCCAAAACCGAAAGTGATTTGCACACCAAAAGAACTGGGCACACCGAGTTTGTTGATAAGACTGCGGATGCAGCTAAACCGATAAGTTTGGAGGTTCCAAAGGTGAGTCCTTCAGGGTCCGATGAGGCTGTTGGTGCAAGTAGCCATGCGGCAGAAGAAATGGTCGTTCCAGAGGTTGACAAAAAGCTGCTTGAGGAACTTGAAGGAATGGGCTTTTCAACAGCGCGGGCAACCCGTGCACTTCACTATTCTGGTAACGCGAGCTTGGAGGCTGCTGTCAATTGGGTAGTTGAACATGAGACTGATCCGAACATAGATGAAATGCCTTTGGTACCAATCAACAGCAAAGTTGAGGCTCCAAAACCTTCTCTCACGCCAGAACAATTGAAAGCCAAGCAACAAGAGCTTAGGATGTGCAAGAAAGCTCGCAAGAAGAAAGAAGAAGAAGAGAAGAGAATGGAAAGAGAGAAAGAAAAGGAGAGGATTCGAGTGGGCAAGGAACTCCTAGAAGCGAAGAGAACAGAAGAAGACAATGAAAGAAAAAGGATTATTGCTTTGCGAAAAGCAGAGAAAGACGAAGAGAAAAGAGCTAGGGAAAAGATTCGTCAAAAGTTGGAGGAAGATAAGGCAGAGAGGAGGAGGAAACTTGGGTTGCCAGTAGAGGATCCTTCAACTGCAAAACCTGCTGCACCTGTTGTGGAAGAGAAAAAGAGCTCATTGCCTATAAGGCCTGCCACAAAAACAGAGCAAATGAGAGAATGTTTGCGATCTCTCAAGCAGAATCACAAGGAGGACGATGCAAAAGTGAAGAGAGCATTCCAGACTCTTTTAACTTTTGTAGGGAATGTTGCCAAAAATCCTAATGAGGAGAAATTTAGAAAGATTCGACTCACTAACCCATCTTTCCAGGAAAGGGTTGGCTCGCTAAAAGGCGGCGTCGAGTTTCTTGAGTTGTGCGAGTTTGAGAGGATGGAAGGGGGCGAGTTCTTGTTTCTTCCCAGGGACAAGGTTGACATGGCAGTGCTGAACTCAGCTGGGTCTGAGCTCGACTCTGCAATCAAGAATCCATTTTTCGGTGTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUB UBA

Protein Analysis

415

Amino Acids

46.44

Weight (kDa)

6.77

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_OTU1_C	PF24560	3 - 35	4.3e-10	Ubiquitin thioesterase OTU1, C-terminal C2H2-type zinc finger
UBA_7	PF22562	113 - 160	3.2e-17	UBA-like domain
UBA	PF00627	115 - 148	1.6e-07	UBA/TS-N domain
PUB	PF09409	321 - 391	3.2e-22	PUB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04850 AT1G04850
fragaria_vesca	FvH4_4g13780 FvH4_4g13780 FvH4_4g13780
malus_domestica	MD04G1012000.v1.1 MD13G1284100.v1.1 MD13G1284200.v1.1
prunus_persica	Prupe.1G010500_v2.0.a1 Prupe.1G010500_v2.0.a1
pyrus_communis	pycom04g00960 pycom420g01260
rosa_chinensis	RchiOBHm_Chr4g0414661
rosa_laevigata	RLG00000008127
rosa_multiflora	Rmu_sc0001192.1_g000017 Rmu_sc0006138.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358470
rosa_rugosa	Rorug04G0129300
rosa_samantha	Rh4AG187600 Rh4BG186400 Rh4CG199900
rosa_wichuraiana	Rw4G016040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	850
Acc65I	GGTACC	1 cut(s)	490
AccB1I	GGYRCC	1 cut(s)	490
AccII	CGCG	2 cut(s)	385, 419
AciI	CCGC	8 cut(s)	5, 24, 33, 144, 224, 308, 385, 1092
AclWI	GGATC	4 cut(s)	153, 458, 818, 831
AcsI	RAATTY	1 cut(s)	1031
AcuI	CTGAAG	1 cut(s)	255
AcyI	GRCGYC	1 cut(s)	1095
AfaI	GTAC	1 cut(s)	492
AfiI	CCNNNNNNNGG	2 cut(s)	1072, 1232
AgsI	TTSAA	5 cut(s)	362, 378, 452, 547, 831
AjnI	CCWGG	2 cut(s)	1065, 1157
Alw21I	GWGCWC	5 cut(s)	72, 81, 400, 875, 1206
Alw26I	GTCTC	1 cut(s)	452
Alw44I	GTGCAC	1 cut(s)	396
AlwI	GGATC	4 cut(s)	153, 458, 818, 831
AoxI	GGCC	1 cut(s)	887
ApaLI	GTGCAC	1 cut(s)	396
ApeKI	GCWGC	4 cut(s)	230, 346, 431, 845
ApoI	RAATTY	1 cut(s)	1031
Asp700I	GAANNNNTTC	2 cut(s)	117, 759
Asp718I	GGTACC	1 cut(s)	490
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	276
AsuHPI	GGTGA	2 cut(s)	73, 274
AvaII	GGWCC	1 cut(s)	276
BaeGI	GKGCMC	2 cut(s)	201, 400
BamHI	GGATCC	1 cut(s)	823
BanI	GGYRCC	1 cut(s)	490
BanII	GRGCYC	3 cut(s)	81, 875, 1206
BbsI	GAAGAC	1 cut(s)	693
Bbv12I	GWGCWC	5 cut(s)	72, 81, 400, 875, 1206
BbvCI	CCTCAGC	1 cut(s)	44
BbvI	GCAGC	4 cut(s)	242, 333, 418, 832
BccI	CCATC	2 cut(s)	1066, 1123
BciT130I	CCWGG	2 cut(s)	1067, 1159
BcoDI	GTCTC	1 cut(s)	452
BfaI	CTAG	2 cut(s)	665, 750
BfuAI	ACCTGC	1 cut(s)	850
BglI	GCCNNNNNGGC	1 cut(s)	886
BisI	GCNGC	8 cut(s)	25, 145, 231, 309, 347, 432, 846, 1093
BlsI	GCNGC	8 cut(s)	26, 146, 232, 310, 348, 433, 847, 1094
Bme1390I	CCNGG	2 cut(s)	1067, 1159
Bme18I	GGWCC	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	5 cut(s)	255, 277, 492, 516, 825
BmrFI	CCNGG	2 cut(s)	1067, 1159
BmrI	ACTGGG	1 cut(s)	204
BmsI	GCATC	2 cut(s)	217, 946
BmuI	ACTGGG	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	693
BplI	GAGNNNNNCTC	4 cut(s)	68, 100, 1193, 1225
Bpu10I	CCTNAGC	2 cut(s)	44, 566
BpuEI	CTTGAG	3 cut(s)	371, 917, 1127
BsaHI	GRCGYC	1 cut(s)	1095
BsaJI	CCNNGG	2 cut(s)	1157, 1158
Bsc4I	CCNNNNNNNGG	2 cut(s)	1072, 1232
Bse1I	ACTGG	2 cut(s)	199, 815
Bse3DI	GCAATG	1 cut(s)	875
BseBI	CCWGG	2 cut(s)	1067, 1159
BseDI	CCNNGG	2 cut(s)	1157, 1158
BseGI	GGATG	3 cut(s)	232, 576, 1134
BseLI	CCNNNNNNNGG	2 cut(s)	1072, 1232
BseMI	GCAATG	1 cut(s)	875
BseMII	CTCAG	4 cut(s)	35, 93, 1191, 1203
BseNI	ACTGG	2 cut(s)	199, 815
BseRI	GAGGAG	4 cut(s)	127, 808, 811, 1040
BseSI	GKGCMC	2 cut(s)	201, 400
BseXI	GCAGC	4 cut(s)	242, 333, 418, 832
BseYI	CCCAGC	1 cut(s)	1193
BsgI	GTGCAG	1 cut(s)	831
Bsh1236I	CGCG	2 cut(s)	385, 419
BshFI	GGCC	1 cut(s)	889
BshNI	GGYRCC	1 cut(s)	490
BsiHKAI	GWGCWC	5 cut(s)	72, 81, 400, 875, 1206
BslFI	GGGAC	1 cut(s)	1175
BslI	CCNNNNNNNGG	2 cut(s)	1072, 1232
BsmAI	GTCTC	1 cut(s)	452
BsmFI	GGGAC	1 cut(s)	1175
BsmI	GAATGC	1 cut(s)	974
BsnI	GGCC	1 cut(s)	889
Bsp1286I	GDGCHC	6 cut(s)	72, 81, 201, 400, 875, 1206
Bsp143I	GATC	4 cut(s)	158, 463, 823, 926
BspACI	CCGC	8 cut(s)	5, 24, 33, 144, 224, 308, 385, 1092
BspANI	GGCC	1 cut(s)	889
BspCNI	CTCAG	4 cut(s)	36, 94, 1192, 1202
BspFNI	CGCG	2 cut(s)	385, 419
BspLI	GGNNCC	5 cut(s)	255, 277, 492, 516, 825
BspMI	ACCTGC	1 cut(s)	850
BspPI	GGATC	4 cut(s)	153, 458, 818, 831
BspT107I	GGYRCC	1 cut(s)	490
BsrDI	GCAATG	1 cut(s)	875
BsrI	ACTGG	2 cut(s)	199, 815
BssECI	CCNNGG	2 cut(s)	1157, 1158
BssMI	GATC	4 cut(s)	158, 463, 823, 926
BssNI	GRCGYC	1 cut(s)	1095
Bst2UI	CCWGG	2 cut(s)	1067, 1159
Bst6I	CTCTTC	6 cut(s)	600, 605, 668, 732, 855, 962
BstACI	GRCGYC	1 cut(s)	1095
BstAPI	GCANNNNNTGC	3 cut(s)	153, 395, 842
BstC8I	GCNNGC	7 cut(s)	7, 72, 387, 421, 586, 891, 1082
BstDEI	CTNAG	5 cut(s)	44, 102, 566, 1189, 1200
BstF5I	GGATG	3 cut(s)	232, 576, 1134
BstFNI	CGCG	2 cut(s)	385, 419
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	4 cut(s)	161, 466, 826, 929
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	4 cut(s)	158, 463, 823, 926
BstNI	CCWGG	2 cut(s)	1067, 1159
BstSCI	CCNGG	2 cut(s)	1065, 1157
BstSLI	GKGCMC	2 cut(s)	201, 400
BstUI	CGCG	2 cut(s)	385, 419
BstV1I	GCAGC	4 cut(s)	242, 333, 418, 832
BstV2I	GAAGAC	1 cut(s)	693
BstX2I	RGATCY	1 cut(s)	823
BstYI	RGATCY	1 cut(s)	823
BsuRI	GGCC	1 cut(s)	889
BtsCI	GGATG	3 cut(s)	232, 576, 1134
BtsI	GCAGTG	1 cut(s)	1185
BtsIMutI	CAGTG	1 cut(s)	1185
BveI	ACCTGC	1 cut(s)	850
Cac8I	GCNNGC	7 cut(s)	7, 72, 387, 421, 586, 891, 1082
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	276
CseI	GACGC	1 cut(s)	1084
Csp6I	GTAC	1 cut(s)	491
CviAII	CATG	4 cut(s)	153, 305, 455, 1174
CviQI	GTAC	1 cut(s)	491
DdeI	CTNAG	5 cut(s)	44, 102, 566, 1189, 1200
DpnI	GATC	4 cut(s)	160, 465, 825, 928
DpnII	GATC	4 cut(s)	158, 463, 823, 926
Eam1104I	CTCTTC	6 cut(s)	600, 605, 668, 732, 855, 962
EarI	CTCTTC	6 cut(s)	600, 605, 668, 732, 855, 962
Ecl136II	GAGCTC	3 cut(s)	79, 873, 1204
Eco147I	AGGCCT	1 cut(s)	889
Eco24I	GRGCYC	3 cut(s)	81, 875, 1206
Eco47I	GGWCC	1 cut(s)	276
Eco53kI	GAGCTC	3 cut(s)	79, 873, 1204
Eco57I	CTGAAG	1 cut(s)	255
EcoICRI	GAGCTC	3 cut(s)	79, 873, 1204
EcoRII	CCWGG	2 cut(s)	1065, 1157
EcoT38I	GRGCYC	3 cut(s)	81, 875, 1206
FaeI	CATG	4 cut(s)	156, 308, 458, 1177
FaiI	YATR	6 cut(s)	154, 306, 456, 473, 884, 1175
FaqI	GGGAC	1 cut(s)	1175
FatI	CATG	4 cut(s)	152, 304, 454, 1173
FauI	CCCGC	2 cut(s)	26, 378
Fnu4HI	GCNGC	8 cut(s)	25, 145, 231, 309, 347, 432, 846, 1093
FokI	GGATG	3 cut(s)	239, 583, 1141
FriOI	GRGCYC	3 cut(s)	81, 875, 1206
Fsp4HI	GCNGC	8 cut(s)	25, 145, 231, 309, 347, 432, 846, 1093
FspBI	CTAG	2 cut(s)	665, 750
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	8 cut(s)	25, 145, 231, 309, 347, 432, 846, 1093
GsaI	CCCAGC	1 cut(s)	1197
HaeIII	GGCC	1 cut(s)	889
HgaI	GACGC	1 cut(s)	1084
HhaI	GCGC	1 cut(s)	385
Hin1I	GRCGYC	1 cut(s)	1095
Hin1II	CATG	4 cut(s)	156, 308, 458, 1177
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HincII	GTYRAC	3 cut(s)	108, 337, 1171
HindII	GTYRAC	3 cut(s)	108, 337, 1171
HphI	GGTGA	2 cut(s)	73, 274
Hpy166II	GTNNAC	4 cut(s)	108, 337, 398, 1171
Hpy188I	TCNGA	4 cut(s)	103, 280, 468, 1201
Hpy188III	TCNNGA	4 cut(s)	329, 979, 1106, 1219
Hpy8I	GTNNAC	4 cut(s)	108, 337, 398, 1171
Hpy99I	CGWCG	1 cut(s)	1100
HpyAV	CCTTC	5 cut(s)	279, 356, 534, 837, 1127
HpyCH4V	TGCA	9 cut(s)	181, 230, 296, 398, 576, 836, 848, 959, 1214
HpyF3I	CTNAG	5 cut(s)	44, 102, 566, 1189, 1200
Hsp92I	GRCGYC	1 cut(s)	1095
Hsp92II	CATG	4 cut(s)	156, 308, 458, 1177
HspAI	GCGC	1 cut(s)	383
KpnI	GGTACC	1 cut(s)	494
Kzo9I	GATC	4 cut(s)	158, 463, 823, 926
LmnI	GCTCC	2 cut(s)	140, 520
Lsp1109I	GCAGC	4 cut(s)	242, 333, 418, 832
LweI	GCATC	2 cut(s)	217, 946
MaeI	CTAG	2 cut(s)	665, 750
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	4 cut(s)	160, 465, 825, 928
MboI	GATC	4 cut(s)	158, 463, 823, 926
MfeI	CAATTG	2 cut(s)	439, 542
MflI	RGATCY	1 cut(s)	823
MhlI	GDGCHC	6 cut(s)	72, 81, 201, 400, 875, 1206
MluCI	AATT	3 cut(s)	439, 542, 1031
MlyI	GAGTC	6 cut(s)	46, 113, 274, 976, 1041, 1202
MmeI	TCCRAC	2 cut(s)	117, 753
MroXI	GAANNNNTTC	2 cut(s)	117, 759
MseI	TTAA	2 cut(s)	989, 1243
MslI	CAYNNNNRTG	1 cut(s)	1178
MspA1I	CMGCKG	1 cut(s)	1193
MspR9I	CCNGG	2 cut(s)	1067, 1159
MunI	CAATTG	2 cut(s)	439, 542
Mva1269I	GAATGC	1 cut(s)	974
MvaI	CCWGG	2 cut(s)	1067, 1159
MvnI	CGCG	2 cut(s)	385, 419
NdeII	GATC	4 cut(s)	158, 463, 823, 926
NlaIII	CATG	4 cut(s)	156, 308, 458, 1177
NlaIV	GGNNCC	5 cut(s)	255, 277, 492, 516, 825
NmeAIII	GCCGAG	1 cut(s)	100
PasI	CCCWGGG	1 cut(s)	1158
PceI	AGGCCT	1 cut(s)	889
PctI	GAATGC	1 cut(s)	974
PdmI	GAANNNNTTC	2 cut(s)	117, 759
PfeI	GAWTC	5 cut(s)	643, 760, 940, 1042, 1222
PfoI	TCCNGGA	1 cut(s)	1065
PkrI	GCNGC	8 cut(s)	26, 146, 232, 310, 348, 433, 847, 1094
PleI	GAGTC	6 cut(s)	45, 112, 273, 976, 1041, 1202
PpsI	GAGTC	6 cut(s)	45, 112, 273, 976, 1041, 1202
Psp124BI	GAGCTC	3 cut(s)	81, 875, 1206
Psp6I	CCWGG	2 cut(s)	1065, 1157
PspFI	CCCAGC	1 cut(s)	1193
PspGI	CCWGG	2 cut(s)	1065, 1157
PspN4I	GGNNCC	5 cut(s)	255, 277, 492, 516, 825
PspPI	GGNCC	1 cut(s)	276
PsuI	RGATCY	1 cut(s)	823
PvuII	CAGCTG	1 cut(s)	1193
RsaI	GTAC	1 cut(s)	492
RsaNI	GTAC	1 cut(s)	491
RseI	CAYNNNNRTG	1 cut(s)	1178
SacI	GAGCTC	3 cut(s)	81, 875, 1206
SaqAI	TTAA	2 cut(s)	989, 1243
SatI	GCNGC	8 cut(s)	25, 145, 231, 309, 347, 432, 846, 1093
Sau3AI	GATC	4 cut(s)	158, 463, 823, 926
Sau96I	GGNCC	1 cut(s)	276
SchI	GAGTC	6 cut(s)	46, 113, 274, 976, 1041, 1202
ScrFI	CCNGG	2 cut(s)	1067, 1159
SduI	GDGCHC	6 cut(s)	72, 81, 201, 400, 875, 1206
SfaNI	GCATC	2 cut(s)	217, 946
SinI	GGWCC	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	1178
SmlI	CTYRAG	4 cut(s)	17, 350, 932, 1106
SmoI	CTYRAG	4 cut(s)	17, 350, 932, 1106
Sse9I	AATT	3 cut(s)	439, 542, 1031
SseBI	AGGCCT	1 cut(s)	889
SsiI	CCGC	8 cut(s)	5, 24, 33, 144, 224, 308, 385, 1092
SspMI	CTAG	2 cut(s)	665, 750
SstI	GAGCTC	3 cut(s)	81, 875, 1206
StuI	AGGCCT	1 cut(s)	889
StyD4I	CCNGG	2 cut(s)	1065, 1157
TaqI	TCGA	4 cut(s)	646, 1045, 1098, 1206
TasI	AATT	3 cut(s)	439, 542, 1031
TauI	GCSGC	4 cut(s)	27, 147, 311, 1095
TfiI	GAWTC	5 cut(s)	643, 760, 940, 1042, 1222
Tru1I	TTAA	2 cut(s)	989, 1243
Tru9I	TTAA	2 cut(s)	989, 1243
TscAI	CASTG	1 cut(s)	1185
TseI	GCWGC	4 cut(s)	230, 346, 431, 845
TspDTI	ATGAA	2 cut(s)	492, 708
TspRI	CASTG	1 cut(s)	1185
VneI	GTGCAC	1 cut(s)	396
VpaK11BI	GGWCC	1 cut(s)	276
XapI	RAATTY	1 cut(s)	1031
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1073
XmnI	GAANNNNTTC	2 cut(s)	117, 759
XspI	CTAG	2 cut(s)	665, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.