MD13G1284100.v1.1

UBX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0008996
Physical Location & Seq
Reverse (-)
42339050 .. 42341279
2230 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1284100.v1.1.491

Sequence Viewer

Length: 474 bp
ATGAAAGAATCAAAGGCAGAGAGGAGGAGGAGACTTGGGTTGCCACCAGAAGATCCTTCAACTGTAAAGTCTGCTGCACCTGTTGTGGAGGAGAAAAAGAGCTCATTACCCATAAGGCCTGCCACAAAAGCAGAGCAAATGAGAGAATGTTTGCGATCTCTCAAGCAGAATCACAAGGAGGACGATGCAAAAGTGAAGAGAGCATTCCAGACTCTCTTAACTTTTGTAGGGAATGTTGCCAAAAATCCTAATGAGGAGAAGTTTAGAAAGATAACACTCACTAACCTGTTTTTCCAGGAAAGGGTTGGTTCACTAAAAGGCGGCGTCGAGTTTCTTGAATTGGGCGAGTTTGAGAGAATGGAAGGGGGAGAGTTCTTGCTTCTTCCTAGGGAGAAGGTTGACATGGCAGTGCTGAACTCAGCTGGATCGGAGCTCGACTCTGCAATCAAGAATCCCTTTTTCGGTGTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUB UBA

Protein Analysis

158

Amino Acids

17.69

Weight (kDa)

9.24

Isoelectric Point (pI)

54.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUB PF09409 64 - 134 3.5e-19 PUB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 321
AclWI GGATC 2 cut(s) 47, 433
AcyI GRCGYC 1 cut(s) 324
AfiI CCNNNNNNNGG 2 cut(s) 301, 461
AgsI TTSAA 2 cut(s) 60, 338
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 3 cut(s) 102, 422, 433
AluI AGCT 3 cut(s) 102, 422, 433
Alw21I GWGCWC 2 cut(s) 104, 435
Alw26I GTCTC 1 cut(s) 25
AlwI GGATC 2 cut(s) 47, 433
AoxI GGCC 1 cut(s) 116
ApeKI GCWGC 1 cut(s) 74
AspA2I CCTAGG 1 cut(s) 386
AvrII CCTAGG 1 cut(s) 386
BanII GRGCYC 2 cut(s) 104, 435
Bbv12I GWGCWC 2 cut(s) 104, 435
BbvI GCAGC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 296
BcoDI GTCTC 1 cut(s) 25
BfaI CTAG 1 cut(s) 387
BisI GCNGC 2 cut(s) 75, 322
BlnI CCTAGG 1 cut(s) 386
BlsI GCNGC 2 cut(s) 76, 323
Bme1390I CCNGG 1 cut(s) 296
BmrFI CCNGG 1 cut(s) 296
BmsI GCATC 1 cut(s) 175
BplI GAGNNNNNCTC 2 cut(s) 422, 454
BpuEI CTTGAG 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 324
BsaJI CCNNGG 1 cut(s) 386
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 461
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 1 cut(s) 386
BseLI CCNNNNNNNGG 2 cut(s) 301, 461
BseMII CTCAG 1 cut(s) 432
BseRI GAGGAG 5 cut(s) 37, 40, 43, 104, 269
BseXI GCAGC 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 60
BshFI GGCC 1 cut(s) 118
BsiHKAI GWGCWC 2 cut(s) 104, 435
BslI CCNNNNNNNGG 2 cut(s) 301, 461
BsmAI GTCTC 1 cut(s) 25
BsmI GAATGC 1 cut(s) 203
BsnI GGCC 1 cut(s) 118
Bsp1286I GDGCHC 2 cut(s) 104, 435
Bsp143I GATC 3 cut(s) 52, 155, 425
BspACI CCGC 1 cut(s) 321
BspANI GGCC 1 cut(s) 118
BspCNI CTCAG 1 cut(s) 431
BspPI GGATC 2 cut(s) 47, 433
BssECI CCNNGG 1 cut(s) 386
BssMI GATC 3 cut(s) 52, 155, 425
BssNI GRCGYC 1 cut(s) 324
BssT1I CCWWGG 1 cut(s) 386
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 191
BstACI GRCGYC 1 cut(s) 324
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 418
BstKTI GATC 3 cut(s) 55, 158, 428
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 3 cut(s) 52, 155, 425
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 1 cut(s) 118
BtsI GCAGTG 1 cut(s) 414
BtsIMutI CAGTG 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 120
CseI GACGC 1 cut(s) 313
CviAII CATG 1 cut(s) 403
CviJI RGCY 4 cut(s) 102, 118, 422, 433
CviKI_1 RGCY 4 cut(s) 102, 118, 422, 433
DdeI CTNAG 1 cut(s) 418
DpnI GATC 3 cut(s) 54, 157, 427
DpnII GATC 3 cut(s) 52, 155, 425
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Ecl136II GAGCTC 2 cut(s) 102, 433
Eco130I CCWWGG 1 cut(s) 386
Eco147I AGGCCT 1 cut(s) 118
Eco24I GRGCYC 2 cut(s) 104, 435
Eco53kI GAGCTC 2 cut(s) 102, 433
EcoICRI GAGCTC 2 cut(s) 102, 433
EcoRII CCWGG 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 386
EcoT38I GRGCYC 2 cut(s) 104, 435
ErhI CCWWGG 1 cut(s) 386
FaeI CATG 1 cut(s) 406
FaiI YATR 2 cut(s) 113, 404
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FatI CATG 1 cut(s) 402
Fnu4HI GCNGC 2 cut(s) 75, 322
FriOI GRGCYC 2 cut(s) 104, 435
Fsp4HI GCNGC 2 cut(s) 75, 322
FspBI CTAG 1 cut(s) 387
GluI GCNGC 2 cut(s) 75, 322
HaeIII GGCC 1 cut(s) 118
HgaI GACGC 1 cut(s) 313
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 1 cut(s) 406
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 5 cut(s) 8, 169, 211, 437, 451
Hpy166II GTNNAC 2 cut(s) 311, 400
Hpy188I TCNGA 1 cut(s) 430
Hpy188III TCNNGA 3 cut(s) 208, 335, 448
Hpy8I GTNNAC 2 cut(s) 311, 400
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 3 cut(s) 66, 356, 388
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4V TGCA 3 cut(s) 77, 188, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 418
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 1 cut(s) 406
Kzo9I GATC 3 cut(s) 52, 155, 425
LmnI GCTCC 1 cut(s) 430
LpnPI CCDG 8 cut(s) 60, 93, 132, 221, 281, 299, 308, 408
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 175
MaeI CTAG 1 cut(s) 387
MalI GATC 3 cut(s) 54, 157, 427
MboI GATC 3 cut(s) 52, 155, 425
MboII GAAGA 3 cut(s) 62, 208, 374
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 2 cut(s) 104, 435
MluCI AATT 1 cut(s) 338
MlyI GAGTC 2 cut(s) 205, 431
MnlI CCTC 6 cut(s) 15, 18, 21, 82, 172, 247
MseI TTAA 2 cut(s) 218, 472
MslI CAYNNNNRTG 1 cut(s) 407
MspA1I CMGCKG 1 cut(s) 422
MspR9I CCNGG 1 cut(s) 296
Mva1269I GAATGC 1 cut(s) 203
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 3 cut(s) 52, 155, 425
NlaIII CATG 1 cut(s) 406
PceI AGGCCT 1 cut(s) 118
PctI GAATGC 1 cut(s) 203
PfeI GAWTC 3 cut(s) 8, 169, 451
PfoI TCCNGGA 1 cut(s) 294
PkrI GCNGC 2 cut(s) 76, 323
PleI GAGTC 2 cut(s) 205, 431
PpsI GAGTC 2 cut(s) 205, 431
Psp124BI GAGCTC 2 cut(s) 104, 435
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PsuI RGATCY 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 422
RseI CAYNNNNRTG 1 cut(s) 407
SacI GAGCTC 2 cut(s) 104, 435
SaqAI TTAA 2 cut(s) 218, 472
SatI GCNGC 2 cut(s) 75, 322
Sau3AI GATC 3 cut(s) 52, 155, 425
SchI GAGTC 2 cut(s) 205, 431
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 2 cut(s) 104, 435
SetI ASST 6 cut(s) 82, 104, 288, 399, 424, 435
SfaNI GCATC 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 407
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 1 cut(s) 338
SseBI AGGCCT 1 cut(s) 118
SsiI CCGC 1 cut(s) 321
SspMI CTAG 1 cut(s) 387
SstI GAGCTC 2 cut(s) 104, 435
StuI AGGCCT 1 cut(s) 118
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 1 cut(s) 386
TaaI ACNGT 1 cut(s) 64
TaqI TCGA 2 cut(s) 327, 435
TasI AATT 1 cut(s) 338
TauI GCSGC 1 cut(s) 324
TfiI GAWTC 3 cut(s) 8, 169, 451
Tru1I TTAA 2 cut(s) 218, 472
Tru9I TTAA 2 cut(s) 218, 472
TscAI CASTG 1 cut(s) 414
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 414
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XmaJI CCTAGG 1 cut(s) 386
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.