Rmu_sc0006138.1_g000001

UBX domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006138.1
Physical Location & Seq
Forward (+)
854 .. 10030
9177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006138.1_g000001.1.cds

Sequence Viewer

Length: 1440 bp
atggcgggcgtatctctcaagtgcggggactgtggggctctcctcaggtctgttgaggaagcccaagagcatgccgagctcacctcccactccaacttcgctgagtccaccgaggctgttctcaacctcgtctgctctacttgcggcaaaccatgccgatccaaaaccgaaagtgacctgcacaccaaaagaactgggcacaccgagtttgttgataagactgcggatgcagcgaaaccgataagtttggaggttccaaaggtgactgcttcagagtcggaagatgttgctgcaactagccagaccgaagaaatggtagttccagaggtcgacaaaaatctgcttcaggaacttgaaggaatgggattttcaaaagagcgggcaacccgtgcacttcactattccggtaatgctagcctggaggctgctgtcaattgggtagttgaacatgagaatgatatggacatagatgagatgcctttggtaccagtcaactccaaagtggaggctcctaaaccttctctcacaccagagcaattgaaagccaagcaacatgagcttagggagaaggcccggaagaaaaaagaagaagaagagaagagaatggaaagagaaagagaaaaggagaggattcgagtgggcaaggaactcctagaagcgaagaggatagaagaagaaaatgaaagaaaacggattttggccttacgaaaagctgagaaagaggaagagaaaagagccagggagaggattcgtcaaaaactggaagaagataaggcggaaaggaggaggaaacttggtttgccaccagaagatccttcaactacaaaaccttctgcacctgttgtagaagagaaaaagatgtcattgccagttaggcctgctactaaagcagagcaaatgagagagtgtttgcgatctcttaagcagaatcacaaggaggatgatgccaaagtaaagagagcattccagactcttttaacttttgtagggaatgttgtgaaaaatcctgatgaggagaaattcagaaaaataagactcactaaccaatctttccaggaaagggttggttcattgaggggaggcactcagtttcttgagttgtgtggatttgagaaaatggaaggcggtgagttcttgtttcttgctagagacaaggttgacatggcagtactccattcagctgggtcggagctagactctgcaataaagaatcccttctttggtgtttttggccttgtggtcttctctggctgcgaggtgtgtgctgatggcgggcggatggcgtctgtattgctgcggcgcgggtctagcgtggagctgttgttggggtctgtggctgggctttctttgggcgaggctgtagttgggtctgggggccaggggctgtgttttgtttttagttggggcgattttatctccttccatcaatgtcattgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

479

Amino Acids

53.45

Weight (kDa)

6.12

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 186
Acc65I GGTACC 1 cut(s) 484
AccB1I GGYRCC 1 cut(s) 484
AccBSI CCGCTC 1 cut(s) 379
AccI GTMKAC 1 cut(s) 330
AccII CGCG 1 cut(s) 1302
AclWI GGATC 2 cut(s) 153, 806
AcsI RAATTY 1 cut(s) 1019
AcuI CTGAAG 2 cut(s) 255, 329
AcyI GRCGYC 1 cut(s) 1283
AfaI GTAC 2 cut(s) 486, 1170
AfiI CCNNNNNNNGG 3 cut(s) 744, 1060, 1220
AflII CTTAAG 1 cut(s) 920
AgsI TTSAA 5 cut(s) 356, 372, 446, 541, 819
AjnI CCWGG 4 cut(s) 417, 737, 1053, 1377
AluBI AGCT 6 cut(s) 79, 559, 713, 1181, 1192, 1318
AluI AGCT 6 cut(s) 79, 559, 713, 1181, 1192, 1318
Alw21I GWGCWC 2 cut(s) 81, 394
Alw26I GTCTC 1 cut(s) 1143
Alw44I GTGCAC 1 cut(s) 390
AlwI GGATC 2 cut(s) 153, 806
AlwNI CAGNNNCTG 1 cut(s) 1384
AoxI GGCC 5 cut(s) 570, 699, 875, 1231, 1375
ApaLI GTGCAC 1 cut(s) 390
ApeKI GCWGC 5 cut(s) 230, 290, 425, 1251, 1294
ApoI RAATTY 1 cut(s) 1019
Asp700I GAANNNNTTC 1 cut(s) 1214
Asp718I GGTACC 1 cut(s) 484
AspLEI GCGC 1 cut(s) 1302
AspS9I GGNCC 2 cut(s) 571, 1375
AsuC2I CCSGG 1 cut(s) 574
AsuHPI GGTGA 3 cut(s) 73, 274, 1139
AsuNHI GCTAGC 1 cut(s) 413
AxyI CCTNAGG 1 cut(s) 44
BaeGI GKGCMC 2 cut(s) 201, 394
BanI GGYRCC 1 cut(s) 484
BanII GRGCYC 2 cut(s) 40, 81
BbsI GAAGAC 1 cut(s) 1234
Bbv12I GWGCWC 2 cut(s) 81, 394
BbvI GCAGC 5 cut(s) 242, 277, 412, 1238, 1281
BccI CCATC 3 cut(s) 1262, 1273, 1431
BcgI CGANNNNNNTGC 2 cut(s) 1244, 1278
BciT130I CCWGG 4 cut(s) 419, 739, 1055, 1379
BcnI CCSGG 1 cut(s) 574
BcoDI GTCTC 1 cut(s) 1143
BfaI CTAG 6 cut(s) 297, 414, 653, 1146, 1193, 1308
BfmI CTRYAG 1 cut(s) 1359
BfrI CTTAAG 1 cut(s) 920
BfuAI ACCTGC 1 cut(s) 186
BglI GCCNNNNNGGC 1 cut(s) 874
BisI GCNGC 7 cut(s) 145, 231, 291, 426, 1252, 1295, 1298
BlsI GCNGC 7 cut(s) 146, 232, 292, 427, 1253, 1296, 1299
BmcAI AGTACT 1 cut(s) 1170
Bme1390I CCNGG 5 cut(s) 419, 574, 739, 1055, 1379
BmgT120I GGNCC 2 cut(s) 571, 1375
BmiI GGNNCC 4 cut(s) 255, 486, 510, 1376
BmrFI CCNGG 5 cut(s) 419, 574, 739, 1055, 1379
BmrI ACTGGG 1 cut(s) 204
BmsI GCATC 3 cut(s) 217, 465, 934
BmtI GCTAGC 1 cut(s) 417
BmuI ACTGGG 1 cut(s) 204
BpiI GAAGAC 1 cut(s) 1234
BplI GAGNNNNNCTC 4 cut(s) 68, 100, 1181, 1213
BpmI CTGGAG 1 cut(s) 440
Bpu10I CCTNAGC 1 cut(s) 560
BpuEI CTTGAG 1 cut(s) 1115
BpuMI CCSGG 1 cut(s) 574
BsaHI GRCGYC 1 cut(s) 1283
BsaJI CCNNGG 3 cut(s) 111, 738, 1378
BsaWI WCCGGW 1 cut(s) 404
BsaXI ACNNNNNCTCC 2 cut(s) 1307, 1337
Bsc4I CCNNNNNNNGG 3 cut(s) 744, 1060, 1220
Bse1I ACTGG 4 cut(s) 199, 488, 765, 869
Bse21I CCTNAGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 863
BseBI CCWGG 4 cut(s) 419, 739, 1055, 1379
BseDI CCNNGG 3 cut(s) 111, 738, 1378
BseGI GGATG 3 cut(s) 232, 946, 1284
BseLI CCNNNNNNNGG 3 cut(s) 744, 1060, 1220
BseMI GCAATG 1 cut(s) 863
BseMII CTCAG 4 cut(s) 58, 93, 705, 1100
BseNI ACTGG 4 cut(s) 199, 488, 765, 869
BseRI GAGGAG 3 cut(s) 32, 799, 1028
BseSI GKGCMC 2 cut(s) 201, 394
BseXI GCAGC 5 cut(s) 242, 277, 412, 1238, 1281
BseYI CCCAGC 2 cut(s) 1181, 1337
BsgI GTGCAG 2 cut(s) 164, 819
Bsh1236I CGCG 1 cut(s) 1302
BshFI GGCC 5 cut(s) 572, 701, 877, 1233, 1377
BshNI GGYRCC 1 cut(s) 484
BsiHKAI GWGCWC 2 cut(s) 81, 394
BsiSI CCGG 2 cut(s) 405, 574
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 3 cut(s) 744, 1060, 1220
BsmAI GTCTC 1 cut(s) 1143
BsmFI GGGAC 1 cut(s) 41
BsmI GAATGC 1 cut(s) 962
BsnI GGCC 5 cut(s) 572, 701, 877, 1233, 1377
Bsp1286I GDGCHC 4 cut(s) 40, 81, 201, 394
Bsp143I GATC 3 cut(s) 158, 811, 914
BspANI GGCC 5 cut(s) 572, 701, 877, 1233, 1377
BspCNI CTCAG 4 cut(s) 57, 94, 706, 1099
BspFNI CGCG 1 cut(s) 1302
BspLI GGNNCC 4 cut(s) 255, 486, 510, 1376
BspMI ACCTGC 1 cut(s) 186
BspOI GCTAGC 1 cut(s) 417
BspPI GGATC 2 cut(s) 153, 806
BspT107I GGYRCC 1 cut(s) 484
BspTI CTTAAG 1 cut(s) 920
BsrBI CCGCTC 1 cut(s) 379
BsrDI GCAATG 1 cut(s) 863
BsrI ACTGG 4 cut(s) 199, 488, 765, 869
BssECI CCNNGG 3 cut(s) 111, 738, 1378
BssMI GATC 3 cut(s) 158, 811, 914
BssNI GRCGYC 1 cut(s) 1283
Bst2UI CCWGG 4 cut(s) 419, 739, 1055, 1379
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 5 cut(s) 588, 593, 656, 720, 843
BstACI GRCGYC 1 cut(s) 1283
BstAFI CTTAAG 1 cut(s) 920
BstAPI GCANNNNNTGC 2 cut(s) 153, 389
BstC8I GCNNGC 6 cut(s) 7, 72, 381, 415, 879, 1274
BstDEI CTNAG 5 cut(s) 44, 102, 560, 714, 1086
BstF5I GGATG 3 cut(s) 232, 946, 1284
BstFNI CGCG 1 cut(s) 1302
BstHHI GCGC 1 cut(s) 1302
BstKTI GATC 3 cut(s) 161, 814, 917
BstMAI GTCTC 1 cut(s) 1143
BstMBI GATC 3 cut(s) 158, 811, 914
BstMWI GCNNNNNNNGC 9 cut(s) 76, 141, 153, 230, 389, 556, 874, 887, 1308
BstNI CCWGG 4 cut(s) 419, 739, 1055, 1379
BstNSI RCATGY 1 cut(s) 74
BstSCI CCNGG 5 cut(s) 417, 572, 737, 1053, 1377
BstSFI CTRYAG 1 cut(s) 1359
BstSLI GKGCMC 2 cut(s) 201, 394
BstUI CGCG 1 cut(s) 1302
BstV1I GCAGC 5 cut(s) 242, 277, 412, 1238, 1281
BstV2I GAAGAC 1 cut(s) 1234
BstX2I RGATCY 1 cut(s) 811
BstXI CCANNNNNNTGG 1 cut(s) 1181
BstYI RGATCY 1 cut(s) 811
Bsu36I CCTNAGG 1 cut(s) 44
BsuRI GGCC 5 cut(s) 572, 701, 877, 1233, 1377
BtsCI GGATG 3 cut(s) 232, 946, 1284
BveI ACCTGC 1 cut(s) 186
Cac8I GCNNGC 6 cut(s) 7, 72, 381, 415, 879, 1274
CaiI CAGNNNCTG 1 cut(s) 1384
CfoI GCGC 1 cut(s) 1302
Cfr13I GGNCC 2 cut(s) 571, 1375
CseI GACGC 1 cut(s) 1272
Csp6I GTAC 2 cut(s) 485, 1169
CviAII CATG 5 cut(s) 71, 153, 449, 554, 1162
CviQI GTAC 2 cut(s) 485, 1169
DdeI CTNAG 5 cut(s) 44, 102, 560, 714, 1086
DpnI GATC 3 cut(s) 160, 813, 916
DpnII GATC 3 cut(s) 158, 811, 914
Eam1104I CTCTTC 5 cut(s) 588, 593, 656, 720, 843
EarI CTCTTC 5 cut(s) 588, 593, 656, 720, 843
EciI GGCGGA 2 cut(s) 791, 1291
Ecl136II GAGCTC 1 cut(s) 79
Eco147I AGGCCT 1 cut(s) 877
Eco24I GRGCYC 2 cut(s) 40, 81
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 2 cut(s) 255, 329
Eco81I CCTNAGG 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 79
EcoRII CCWGG 4 cut(s) 417, 737, 1053, 1377
EcoT38I GRGCYC 2 cut(s) 40, 81
FaeI CATG 5 cut(s) 74, 156, 452, 557, 1165
FaiI YATR 7 cut(s) 72, 154, 450, 461, 467, 555, 1163
FalI AAGNNNNNCTT 2 cut(s) 1199, 1231
FaqI GGGAC 1 cut(s) 41
FatI CATG 5 cut(s) 70, 152, 448, 553, 1161
FauI CCCGC 4 cut(s) 17, 372, 1265, 1295
FblI GTMKAC 1 cut(s) 330
Fnu4HI GCNGC 7 cut(s) 145, 231, 291, 426, 1252, 1295, 1298
FokI GGATG 3 cut(s) 239, 953, 1291
FriOI GRGCYC 2 cut(s) 40, 81
Fsp4HI GCNGC 7 cut(s) 145, 231, 291, 426, 1252, 1295, 1298
FspBI CTAG 6 cut(s) 297, 414, 653, 1146, 1193, 1308
GlaI GCGC 1 cut(s) 1301
GluI GCNGC 7 cut(s) 145, 231, 291, 426, 1252, 1295, 1298
GsaI CCCAGC 2 cut(s) 1185, 1341
GsuI CTGGAG 1 cut(s) 440
HaeIII GGCC 5 cut(s) 572, 701, 877, 1233, 1377
HapII CCGG 2 cut(s) 405, 574
HgaI GACGC 1 cut(s) 1272
HhaI GCGC 1 cut(s) 1302
Hin1I GRCGYC 1 cut(s) 1283
Hin1II CATG 5 cut(s) 74, 156, 452, 557, 1165
Hin6I GCGC 1 cut(s) 1300
HinP1I GCGC 1 cut(s) 1300
HincII GTYRAC 3 cut(s) 331, 493, 1159
HindII GTYRAC 3 cut(s) 331, 493, 1159
HinfI GANTC 9 cut(s) 104, 275, 631, 748, 928, 970, 1035, 1196, 1210
HpaII CCGG 2 cut(s) 405, 574
HphI GGTGA 3 cut(s) 73, 274, 1139
Hpy166II GTNNAC 5 cut(s) 108, 331, 392, 493, 1159
Hpy188I TCNGA 4 cut(s) 274, 280, 1025, 1189
Hpy188III TCNNGA 5 cut(s) 323, 347, 967, 1007, 1094
Hpy8I GTNNAC 5 cut(s) 108, 331, 392, 493, 1159
HpyAV CCTTC 8 cut(s) 350, 528, 562, 825, 840, 1115, 1225, 1429
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 6 cut(s) 181, 230, 293, 392, 836, 1202
HpyF10VI GCNNNNNNNGC 9 cut(s) 76, 141, 153, 230, 389, 556, 874, 887, 1308
HpyF3I CTNAG 5 cut(s) 44, 102, 560, 714, 1086
Hsp92I GRCGYC 1 cut(s) 1283
Hsp92II CATG 5 cut(s) 74, 156, 452, 557, 1165
HspAI GCGC 1 cut(s) 1300
KpnI GGTACC 1 cut(s) 488
Kzo9I GATC 3 cut(s) 158, 811, 914
LmnI GCTCC 3 cut(s) 514, 1189, 1315
Lsp1109I GCAGC 5 cut(s) 242, 277, 412, 1238, 1281
LweI GCATC 3 cut(s) 217, 465, 934
MaeI CTAG 6 cut(s) 297, 414, 653, 1146, 1193, 1308
MaeIII GTNAC 2 cut(s) 173, 262
MalI GATC 3 cut(s) 160, 813, 916
MbiI CCGCTC 1 cut(s) 379
MboI GATC 3 cut(s) 158, 811, 914
MfeI CAATTG 2 cut(s) 433, 536
MflI RGATCY 1 cut(s) 811
MhlI GDGCHC 4 cut(s) 40, 81, 201, 394
MluCI AATT 3 cut(s) 433, 536, 1019
MlyI GAGTC 5 cut(s) 113, 284, 964, 1029, 1190
MmeI TCCRAC 3 cut(s) 117, 258, 1167
MroXI GAANNNNTTC 1 cut(s) 1214
MseI TTAA 2 cut(s) 921, 977
MslI CAYNNNNRTG 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 1181
MspCI CTTAAG 1 cut(s) 920
MspI CCGG 2 cut(s) 405, 574
MspR9I CCNGG 5 cut(s) 419, 574, 739, 1055, 1379
MunI CAATTG 2 cut(s) 433, 536
Mva1269I GAATGC 1 cut(s) 962
MvaI CCWGG 4 cut(s) 419, 739, 1055, 1379
MvnI CGCG 1 cut(s) 1302
MwoI GCNNNNNNNGC 9 cut(s) 76, 141, 153, 230, 389, 556, 874, 887, 1308
NciI CCSGG 1 cut(s) 574
NdeII GATC 3 cut(s) 158, 811, 914
NheI GCTAGC 1 cut(s) 413
NlaIII CATG 5 cut(s) 74, 156, 452, 557, 1165
NlaIV GGNNCC 4 cut(s) 255, 486, 510, 1376
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 173, 262
NspI RCATGY 1 cut(s) 74
PaeI GCATGC 1 cut(s) 74
PceI AGGCCT 1 cut(s) 877
PctI GAATGC 1 cut(s) 962
PdmI GAANNNNTTC 1 cut(s) 1214
PfeI GAWTC 4 cut(s) 631, 748, 928, 1210
PfoI TCCNGGA 1 cut(s) 1053
PkrI GCNGC 7 cut(s) 146, 232, 292, 427, 1253, 1296, 1299
PleI GAGTC 5 cut(s) 112, 283, 964, 1029, 1190
PpsI GAGTC 5 cut(s) 112, 283, 964, 1029, 1190
Psp124BI GAGCTC 1 cut(s) 81
Psp6I CCWGG 4 cut(s) 417, 737, 1053, 1377
PspFI CCCAGC 2 cut(s) 1181, 1337
PspGI CCWGG 4 cut(s) 417, 737, 1053, 1377
PspN4I GGNNCC 4 cut(s) 255, 486, 510, 1376
PspPI GGNCC 2 cut(s) 571, 1375
PstNI CAGNNNCTG 1 cut(s) 1384
PsuI RGATCY 1 cut(s) 811
PvuII CAGCTG 1 cut(s) 1181
RsaI GTAC 2 cut(s) 486, 1170
RsaNI GTAC 2 cut(s) 485, 1169
RseI CAYNNNNRTG 1 cut(s) 453
SacI GAGCTC 1 cut(s) 81
SalI GTCGAC 1 cut(s) 329
SaqAI TTAA 2 cut(s) 921, 977
SatI GCNGC 7 cut(s) 145, 231, 291, 426, 1252, 1295, 1298
Sau3AI GATC 3 cut(s) 158, 811, 914
Sau96I GGNCC 2 cut(s) 571, 1375
ScaI AGTACT 1 cut(s) 1170
SchI GAGTC 5 cut(s) 113, 284, 964, 1029, 1190
ScrFI CCNGG 5 cut(s) 419, 574, 739, 1055, 1379
SduI GDGCHC 4 cut(s) 40, 81, 201, 394
SfaNI GCATC 3 cut(s) 217, 465, 934
SfcI CTRYAG 1 cut(s) 1359
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 3 cut(s) 17, 920, 1094
SmoI CTYRAG 3 cut(s) 17, 920, 1094
SphI GCATGC 1 cut(s) 74
Sse9I AATT 3 cut(s) 433, 536, 1019
SseBI AGGCCT 1 cut(s) 877
SspMI CTAG 6 cut(s) 297, 414, 653, 1146, 1193, 1308
SstI GAGCTC 1 cut(s) 81
StuI AGGCCT 1 cut(s) 877
StyD4I CCNGG 5 cut(s) 417, 572, 737, 1053, 1377
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 2 cut(s) 330, 634
TaqII GACCGA 1 cut(s) 320
TasI AATT 3 cut(s) 433, 536, 1019
TatI WGTACW 1 cut(s) 1168
TauI GCSGC 2 cut(s) 147, 1300
TfiI GAWTC 4 cut(s) 631, 748, 928, 1210
Tru1I TTAA 2 cut(s) 921, 977
Tru9I TTAA 2 cut(s) 921, 977
TseFI GTSAC 2 cut(s) 173, 262
TseI GCWGC 5 cut(s) 230, 290, 425, 1251, 1294
Tsp45I GTSAC 2 cut(s) 173, 262
TspDTI ATGAA 2 cut(s) 696, 1059
TspGWI ACGGA 1 cut(s) 706
Vha464I CTTAAG 1 cut(s) 920
VneI GTGCAC 1 cut(s) 390
XapI RAATTY 1 cut(s) 1019
XceI RCATGY 1 cut(s) 74
XcmI CCANNNNNNNNNTGG 1 cut(s) 1061
XmiI GTMKAC 1 cut(s) 330
XmnI GAANNNNTTC 1 cut(s) 1214
XspI CTAG 6 cut(s) 297, 414, 653, 1146, 1193, 1308
ZrmI AGTACT 1 cut(s) 1170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.