Rorug04G0129300

UBX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0008996
Physical Location & Seq
Forward (+)
20642173 .. 20642710
538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0129300.1

Sequence Viewer

Length: 378 bp
ATGGGGATTCAGAATATTTTGATTATCTTGAGCATCGTCGCCTGCCTCATGTCGACATCTATGGCCACACCAGGAACTGCTACTTACTACACCACCTATATTCCATCAGCATGCTACAATTACACCCAAGAAGGTGTGATGATTGCAGCAGCAGGTGACGCCATATGGAACAATGGTGCAGCATGTGGGAAATTTGTCACCGTTAAATGCACAGGTCCTAGGAATCTCGTACCGCCTCCTTGCACCAATGCAAACGTAACTGTAAAAATTATAGATCATTGTCCCGGATGCCCATTTACTCTCGACCTTTCTAAAGAGGCTTTCACCAAAATCGCTAACCCTATGGGGGGAATAATTAATATTGATTATTATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUB UBA

Protein Analysis

125

Amino Acids

13.29

Weight (kDa)

6.5

Isoelectric Point (pI)

44.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 49 - 123 3.2e-14 Lytic transglycolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 143
Acc36I ACCTGC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 53
AciI CCGC 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 159
AfaI GTAC 1 cut(s) 231
AfiI CCNNNNNNNGG 2 cut(s) 346, 347
AjnI CCWGG 1 cut(s) 70
AlwNI CAGNNNCTG 1 cut(s) 77
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 3 cut(s) 146, 149, 179
ApoI RAATTY 1 cut(s) 191
AseI ATTAAT 1 cut(s) 357
AspA2I CCTAGG 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 215
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 3 cut(s) 167, 190, 316
AvaII GGWCC 1 cut(s) 215
AvrII CCTAGG 1 cut(s) 218
BalI TGGCCA 1 cut(s) 65
BbvI GCAGC 3 cut(s) 158, 161, 191
BccI CCATC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 72
BcnI CCSGG 1 cut(s) 285
BfaI CTAG 1 cut(s) 219
BfuAI ACCTGC 1 cut(s) 143
BisI GCNGC 3 cut(s) 147, 150, 180
BlnI CCTAGG 1 cut(s) 218
BlsI GCNGC 3 cut(s) 148, 151, 181
Bme1390I CCNGG 2 cut(s) 72, 285
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmrFI CCNGG 2 cut(s) 72, 285
BmsI GCATC 2 cut(s) 42, 278
BpuEI CTTGAG 1 cut(s) 49
BpuMI CCSGG 1 cut(s) 285
BsaBI GATNNNNATC 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 218
Bsc4I CCNNNNNNNGG 2 cut(s) 346, 347
Bse8I GATNNNNATC 1 cut(s) 369
BseBI CCWGG 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 293
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 2 cut(s) 346, 347
BseXI GCAGC 3 cut(s) 158, 161, 191
BsgI GTGCAG 1 cut(s) 198
BshFI GGCC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 285
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 2 cut(s) 346, 347
BsmFI GGGAC 1 cut(s) 267
BsnI GGCC 1 cut(s) 65
Bsp143I GATC 1 cut(s) 274
BspACI CCGC 1 cut(s) 233
BspANI GGCC 1 cut(s) 65
BspMI ACCTGC 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 1 cut(s) 274
BssNI GRCGYC 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 218
Bst2UI CCWGG 1 cut(s) 72
Bst4CI ACNGT 2 cut(s) 202, 262
BstACI GRCGYC 1 cut(s) 159
BstC8I GCNNGC 2 cut(s) 43, 112
BstF5I GGATG 1 cut(s) 293
BstKTI GATC 1 cut(s) 277
BstMBI GATC 1 cut(s) 274
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 72
BstNSI RCATGY 2 cut(s) 114, 186
BstSCI CCNGG 2 cut(s) 70, 283
BstV1I GCAGC 3 cut(s) 158, 161, 191
BsuRI GGCC 1 cut(s) 65
BtsCI GGATG 1 cut(s) 293
BveI ACCTGC 1 cut(s) 143
Cac8I GCNNGC 2 cut(s) 43, 112
CaiI CAGNNNCTG 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 215
CseI GACGC 1 cut(s) 167
Csp6I GTAC 1 cut(s) 230
CviAII CATG 3 cut(s) 49, 111, 183
CviJI RGCY 2 cut(s) 65, 320
CviKI_1 RGCY 2 cut(s) 65, 320
CviQI GTAC 1 cut(s) 230
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
EaeI YGGCCR 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 218
Eco47I GGWCC 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 3 cut(s) 52, 114, 186
FaiI YATR 9 cut(s) 50, 62, 99, 112, 164, 166, 184, 272, 344
FaqI GGGAC 1 cut(s) 267
FatI CATG 3 cut(s) 48, 110, 182
FauNDI CATATG 1 cut(s) 164
FblI GTMKAC 1 cut(s) 53
Fnu4HI GCNGC 3 cut(s) 147, 150, 180
FokI GGATG 1 cut(s) 300
Fsp4HI GCNGC 3 cut(s) 147, 150, 180
FspBI CTAG 1 cut(s) 219
GluI GCNGC 3 cut(s) 147, 150, 180
HaeIII GGCC 1 cut(s) 65
HapII CCGG 1 cut(s) 285
HgaI GACGC 1 cut(s) 167
Hin1I GRCGYC 1 cut(s) 159
Hin1II CATG 3 cut(s) 52, 114, 186
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 2 cut(s) 7, 223
HpaII CCGG 1 cut(s) 285
HphI GGTGA 3 cut(s) 167, 190, 316
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 2 cut(s) 28, 302
Hpy8I GTNNAC 1 cut(s) 54
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 125
HpyCH4III ACNGT 2 cut(s) 202, 262
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 5 cut(s) 146, 179, 210, 243, 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 1 cut(s) 159
Hsp92II CATG 3 cut(s) 52, 114, 186
Kzo9I GATC 1 cut(s) 274
LpnPI CCDG 6 cut(s) 55, 57, 84, 138, 198, 298
Lsp1109I GCAGC 3 cut(s) 158, 161, 191
LweI GCATC 2 cut(s) 42, 278
MaeI CTAG 1 cut(s) 219
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 3 cut(s) 155, 196, 256
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 4 cut(s) 118, 191, 267, 354
MluNI TGGCCA 1 cut(s) 65
MnlI CCTC 3 cut(s) 56, 246, 310
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
MseI TTAA 2 cut(s) 204, 357
MslI CAYNNNNRTG 1 cut(s) 109
Msp20I TGGCCA 1 cut(s) 65
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 2 cut(s) 72, 285
MvaI CCWGG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 158
NciI CCSGG 1 cut(s) 285
NdeI CATATG 1 cut(s) 164
NdeII GATC 1 cut(s) 274
NlaIII CATG 3 cut(s) 52, 114, 186
NmuCI GTSAC 2 cut(s) 155, 196
NspI RCATGY 2 cut(s) 114, 186
PaeI GCATGC 1 cut(s) 114
PaqCI CACCTGC 1 cut(s) 143
PfeI GAWTC 2 cut(s) 7, 223
PfoI TCCNGGA 1 cut(s) 283
PkrI GCNGC 3 cut(s) 148, 151, 181
PpuMI RGGWCCY 1 cut(s) 215
PshBI ATTAAT 1 cut(s) 357
Psp5II RGGWCCY 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PspPI GGNCC 1 cut(s) 215
PspPPI RGGWCCY 1 cut(s) 215
PstNI CAGNNNCTG 1 cut(s) 77
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 109
SalI GTCGAC 1 cut(s) 52
SaqAI TTAA 2 cut(s) 204, 357
SatI GCNGC 3 cut(s) 147, 150, 180
Sau3AI GATC 1 cut(s) 274
Sau96I GGNCC 1 cut(s) 215
ScrFI CCNGG 2 cut(s) 72, 285
SetI ASST 6 cut(s) 98, 136, 157, 217, 258, 309
SfaNI GCATC 2 cut(s) 42, 278
SinI GGWCC 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 109
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
SphI GCATGC 1 cut(s) 114
Sse9I AATT 4 cut(s) 118, 191, 267, 354
SsiI CCGC 1 cut(s) 233
SspI AATATT 2 cut(s) 16, 361
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 2 cut(s) 70, 283
StyI CCWWGG 1 cut(s) 218
TaaI ACNGT 2 cut(s) 202, 262
TaiI ACGT 1 cut(s) 258
TaqI TCGA 2 cut(s) 53, 303
TasI AATT 4 cut(s) 118, 191, 267, 354
TfiI GAWTC 2 cut(s) 7, 223
Tru1I TTAA 2 cut(s) 204, 357
Tru9I TTAA 2 cut(s) 204, 357
TseFI GTSAC 2 cut(s) 155, 196
TseI GCWGC 3 cut(s) 146, 149, 179
Tsp45I GTSAC 2 cut(s) 155, 196
VpaK11BI GGWCC 1 cut(s) 215
VspI ATTAAT 1 cut(s) 357
XapI RAATTY 1 cut(s) 191
XceI RCATGY 2 cut(s) 114, 186
XmaJI CCTAGG 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 53
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.