Rh4BG186400

UBX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0008996
Physical Location & Seq
Reverse (-)
32571664 .. 32580995
9332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG186400.1

Sequence Viewer

Length: 864 bp
ATGGCGGGCGTATCTCTCAAGTGCGGGGACTGTGGGGCTCTCCTCAGGTCCGTTGAGGAAGCCCAAGAGCATGCCGAGCTCACCTCCCACTCCAACTTTGCTGAGTCCACCGAGGCTGTTCTCAACCTCGTCTGCTCTACTTGCGGCAAACCATGCCGATCCAAAACCGAAAGTGACCTGCACACCAAAAGAACTGGGCACACCGAGTTTGTTGATAAGACTGCGGATGCAGCAAAACCGATAAGTTTGGAGGTTCCAAAGGTGACTGCTTCAGAGTCGGAAGATGTTGCCGCAACTAGCCAGACCGAAGAAATGGTAGTTCCAGAGGTCGACAAAAATCTGCTTCAGGAACTTGAAGGAATGGGATTTTCAAAAGAGCGGGCAACCCGTGCACTTCACTATTCCGGTAATGCTAGCCTGGAGGCTGCTGTCAATTGGGTAGTTGAACATGAGAATGATATGGACATAGATGAGATGCCTTTGGTACCAGTCAACTTCAAAGTTGAGGCTCCAAAACCTTCTCTCACACCAGAGCAATTGAAAGCCAAGCAACATGAGCTTAGGGAGAAGGCCCGGAAGAAAAAAGAAGAAGAAGAGAAGAGAATGGAAAGAGAAAGAGAAAAGGAGAGGATTCGAGTGGGCAAGGAACTCCTAGAAGCGAAGAGGATAGAAGAAGAAAATGAAAGAAAACGGATTTTGGCCTTACGAAAAGCTGAGAAAGAGGAAGAGAAAAGAGCCAGGGAGAGGATTCGTCAAAAACTGGAAGAAGATAAGGCGGAAAGGAGGAGGAAACTTGGTTTGCCACCAGAAGATCCTTTAACTACAAAACCTTCAGCACCTGTTGTAGAAGAGAAAAAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUB UBA

Protein Analysis

287

Amino Acids

32.52

Weight (kDa)

5.75

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_OTU1_C PF24560 3 - 35 1.9e-10 Ubiquitin thioesterase OTU1, C-terminal C2H2-type zinc finger
UBA_7 PF22562 111 - 158 3.7e-18 UBA-like domain
UBA PF00627 115 - 146 2.6e-08 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 186
Acc65I GGTACC 1 cut(s) 484
AccB1I GGYRCC 1 cut(s) 484
AccBSI CCGCTC 1 cut(s) 379
AccI GTMKAC 1 cut(s) 330
AciI CCGC 7 cut(s) 5, 24, 144, 224, 291, 379, 776
AclWI GGATC 2 cut(s) 153, 806
AcuI CTGAAG 3 cut(s) 255, 329, 816
AfaI GTAC 1 cut(s) 486
AfiI CCNNNNNNNGG 1 cut(s) 744
AgsI TTSAA 5 cut(s) 356, 372, 446, 499, 541
AjnI CCWGG 2 cut(s) 417, 737
AluBI AGCT 3 cut(s) 79, 559, 713
AluI AGCT 3 cut(s) 79, 559, 713
Alw21I GWGCWC 2 cut(s) 81, 394
Alw44I GTGCAC 1 cut(s) 390
AlwI GGATC 2 cut(s) 153, 806
AlwNI CAGNNNCTG 1 cut(s) 839
AoxI GGCC 2 cut(s) 570, 699
ApaLI GTGCAC 1 cut(s) 390
ApeKI GCWGC 2 cut(s) 230, 425
Asp718I GGTACC 1 cut(s) 484
AspS9I GGNCC 2 cut(s) 48, 571
AsuC2I CCSGG 1 cut(s) 574
AsuHPI GGTGA 2 cut(s) 73, 274
AsuNHI GCTAGC 1 cut(s) 413
AvaII GGWCC 1 cut(s) 48
AxyI CCTNAGG 1 cut(s) 44
BaeGI GKGCMC 2 cut(s) 201, 394
BanI GGYRCC 1 cut(s) 484
BanII GRGCYC 2 cut(s) 40, 81
Bbv12I GWGCWC 2 cut(s) 81, 394
BbvI GCAGC 2 cut(s) 242, 412
BciT130I CCWGG 2 cut(s) 419, 739
BcnI CCSGG 1 cut(s) 574
BfaI CTAG 3 cut(s) 297, 414, 653
BfuAI ACCTGC 1 cut(s) 186
BisI GCNGC 4 cut(s) 145, 231, 291, 426
BlsI GCNGC 4 cut(s) 146, 232, 292, 427
Bme1390I CCNGG 3 cut(s) 419, 574, 739
Bme18I GGWCC 1 cut(s) 48
BmgT120I GGNCC 2 cut(s) 48, 571
BmiI GGNNCC 3 cut(s) 255, 486, 510
BmrFI CCNGG 3 cut(s) 419, 574, 739
BmrI ACTGGG 1 cut(s) 204
BmsI GCATC 2 cut(s) 217, 465
BmtI GCTAGC 1 cut(s) 417
BmuI ACTGGG 1 cut(s) 204
BplI GAGNNNNNCTC 2 cut(s) 68, 100
BpmI CTGGAG 1 cut(s) 440
Bpu10I CCTNAGC 1 cut(s) 560
BpuMI CCSGG 1 cut(s) 574
BsaJI CCNNGG 2 cut(s) 111, 738
BsaWI WCCGGW 1 cut(s) 404
Bsc4I CCNNNNNNNGG 1 cut(s) 744
Bse1I ACTGG 3 cut(s) 199, 488, 765
Bse21I CCTNAGG 1 cut(s) 44
BseBI CCWGG 2 cut(s) 419, 739
BseDI CCNNGG 2 cut(s) 111, 738
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 744
BseMII CTCAG 3 cut(s) 58, 93, 705
BseNI ACTGG 3 cut(s) 199, 488, 765
BseRI GAGGAG 2 cut(s) 32, 799
BseSI GKGCMC 2 cut(s) 201, 394
BseXI GCAGC 2 cut(s) 242, 412
BsgI GTGCAG 1 cut(s) 164
BshFI GGCC 2 cut(s) 572, 701
BshNI GGYRCC 1 cut(s) 484
BsiHKAI GWGCWC 2 cut(s) 81, 394
BsiSI CCGG 2 cut(s) 405, 574
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 744
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 2 cut(s) 572, 701
Bsp1286I GDGCHC 4 cut(s) 40, 81, 201, 394
Bsp143I GATC 2 cut(s) 158, 811
BspACI CCGC 7 cut(s) 5, 24, 144, 224, 291, 379, 776
BspANI GGCC 2 cut(s) 572, 701
BspCNI CTCAG 3 cut(s) 57, 94, 706
BspLI GGNNCC 3 cut(s) 255, 486, 510
BspMI ACCTGC 1 cut(s) 186
BspOI GCTAGC 1 cut(s) 417
BspPI GGATC 2 cut(s) 153, 806
BspT107I GGYRCC 1 cut(s) 484
BsrBI CCGCTC 1 cut(s) 379
BsrI ACTGG 3 cut(s) 199, 488, 765
BssECI CCNNGG 2 cut(s) 111, 738
BssMI GATC 2 cut(s) 158, 811
Bst2UI CCWGG 2 cut(s) 419, 739
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 5 cut(s) 588, 593, 656, 720, 843
BstAPI GCANNNNNTGC 2 cut(s) 153, 389
BstC8I GCNNGC 4 cut(s) 7, 72, 381, 415
BstDEI CTNAG 4 cut(s) 44, 102, 560, 714
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 2 cut(s) 161, 814
BstMBI GATC 2 cut(s) 158, 811
BstMWI GCNNNNNNNGC 6 cut(s) 76, 141, 153, 230, 389, 556
BstNI CCWGG 2 cut(s) 419, 739
BstNSI RCATGY 1 cut(s) 74
BstSCI CCNGG 3 cut(s) 417, 572, 737
BstSLI GKGCMC 2 cut(s) 201, 394
BstV1I GCAGC 2 cut(s) 242, 412
BstX2I RGATCY 1 cut(s) 811
BstYI RGATCY 1 cut(s) 811
Bsu36I CCTNAGG 1 cut(s) 44
BsuRI GGCC 2 cut(s) 572, 701
BtsCI GGATG 1 cut(s) 232
BveI ACCTGC 1 cut(s) 186
Cac8I GCNNGC 4 cut(s) 7, 72, 381, 415
CaiI CAGNNNCTG 1 cut(s) 839
Cfr13I GGNCC 2 cut(s) 48, 571
Csp6I GTAC 1 cut(s) 485
CviAII CATG 5 cut(s) 71, 153, 449, 554, 861
CviQI GTAC 1 cut(s) 485
DdeI CTNAG 4 cut(s) 44, 102, 560, 714
DpnI GATC 2 cut(s) 160, 813
DpnII GATC 2 cut(s) 158, 811
Eam1104I CTCTTC 5 cut(s) 588, 593, 656, 720, 843
EarI CTCTTC 5 cut(s) 588, 593, 656, 720, 843
EciI GGCGGA 1 cut(s) 791
Ecl136II GAGCTC 1 cut(s) 79
Eco24I GRGCYC 2 cut(s) 40, 81
Eco47I GGWCC 1 cut(s) 48
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 3 cut(s) 255, 329, 816
Eco81I CCTNAGG 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 79
EcoRII CCWGG 2 cut(s) 417, 737
EcoT38I GRGCYC 2 cut(s) 40, 81
FaeI CATG 5 cut(s) 74, 156, 452, 557, 864
FaiI YATR 7 cut(s) 72, 154, 450, 461, 467, 555, 862
FaqI GGGAC 1 cut(s) 41
FatI CATG 5 cut(s) 70, 152, 448, 553, 860
FauI CCCGC 2 cut(s) 17, 372
FblI GTMKAC 1 cut(s) 330
Fnu4HI GCNGC 4 cut(s) 145, 231, 291, 426
FokI GGATG 1 cut(s) 239
FriOI GRGCYC 2 cut(s) 40, 81
Fsp4HI GCNGC 4 cut(s) 145, 231, 291, 426
FspBI CTAG 3 cut(s) 297, 414, 653
GluI GCNGC 4 cut(s) 145, 231, 291, 426
GsuI CTGGAG 1 cut(s) 440
HaeIII GGCC 2 cut(s) 572, 701
HapII CCGG 2 cut(s) 405, 574
Hin1II CATG 5 cut(s) 74, 156, 452, 557, 864
HincII GTYRAC 2 cut(s) 331, 493
HindII GTYRAC 2 cut(s) 331, 493
HinfI GANTC 4 cut(s) 104, 275, 631, 748
HpaII CCGG 2 cut(s) 405, 574
HphI GGTGA 2 cut(s) 73, 274
Hpy166II GTNNAC 4 cut(s) 108, 331, 392, 493
Hpy188I TCNGA 2 cut(s) 274, 280
Hpy188III TCNNGA 2 cut(s) 323, 347
Hpy8I GTNNAC 4 cut(s) 108, 331, 392, 493
HpyAV CCTTC 4 cut(s) 350, 528, 562, 840
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 3 cut(s) 181, 230, 392
HpyF10VI GCNNNNNNNGC 6 cut(s) 76, 141, 153, 230, 389, 556
HpyF3I CTNAG 4 cut(s) 44, 102, 560, 714
Hsp92II CATG 5 cut(s) 74, 156, 452, 557, 864
KpnI GGTACC 1 cut(s) 488
Kzo9I GATC 2 cut(s) 158, 811
LmnI GCTCC 1 cut(s) 514
Lsp1109I GCAGC 2 cut(s) 242, 412
LweI GCATC 2 cut(s) 217, 465
MaeI CTAG 3 cut(s) 297, 414, 653
MaeIII GTNAC 2 cut(s) 173, 262
MalI GATC 2 cut(s) 160, 813
MbiI CCGCTC 1 cut(s) 379
MboI GATC 2 cut(s) 158, 811
MfeI CAATTG 2 cut(s) 433, 536
MflI RGATCY 1 cut(s) 811
MhlI GDGCHC 4 cut(s) 40, 81, 201, 394
MluCI AATT 2 cut(s) 433, 536
MlyI GAGTC 2 cut(s) 113, 284
MmeI TCCRAC 2 cut(s) 117, 258
MseI TTAA 1 cut(s) 818
MslI CAYNNNNRTG 1 cut(s) 453
MspI CCGG 2 cut(s) 405, 574
MspR9I CCNGG 3 cut(s) 419, 574, 739
MunI CAATTG 2 cut(s) 433, 536
MvaI CCWGG 2 cut(s) 419, 739
MwoI GCNNNNNNNGC 6 cut(s) 76, 141, 153, 230, 389, 556
NciI CCSGG 1 cut(s) 574
NdeII GATC 2 cut(s) 158, 811
NheI GCTAGC 1 cut(s) 413
NlaIII CATG 5 cut(s) 74, 156, 452, 557, 864
NlaIV GGNNCC 3 cut(s) 255, 486, 510
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 173, 262
NspI RCATGY 1 cut(s) 74
PaeI GCATGC 1 cut(s) 74
PfeI GAWTC 2 cut(s) 631, 748
PkrI GCNGC 4 cut(s) 146, 232, 292, 427
PleI GAGTC 2 cut(s) 112, 283
PpsI GAGTC 2 cut(s) 112, 283
Psp124BI GAGCTC 1 cut(s) 81
Psp6I CCWGG 2 cut(s) 417, 737
PspGI CCWGG 2 cut(s) 417, 737
PspN4I GGNNCC 3 cut(s) 255, 486, 510
PspPI GGNCC 2 cut(s) 48, 571
PstNI CAGNNNCTG 1 cut(s) 839
PsuI RGATCY 1 cut(s) 811
RsaI GTAC 1 cut(s) 486
RsaNI GTAC 1 cut(s) 485
RseI CAYNNNNRTG 1 cut(s) 453
SacI GAGCTC 1 cut(s) 81
SalI GTCGAC 1 cut(s) 329
SaqAI TTAA 1 cut(s) 818
SatI GCNGC 4 cut(s) 145, 231, 291, 426
Sau3AI GATC 2 cut(s) 158, 811
Sau96I GGNCC 2 cut(s) 48, 571
SchI GAGTC 2 cut(s) 113, 284
ScrFI CCNGG 3 cut(s) 419, 574, 739
SduI GDGCHC 4 cut(s) 40, 81, 201, 394
SfaNI GCATC 2 cut(s) 217, 465
SinI GGWCC 1 cut(s) 48
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
SphI GCATGC 1 cut(s) 74
Sse9I AATT 2 cut(s) 433, 536
SsiI CCGC 7 cut(s) 5, 24, 144, 224, 291, 379, 776
SspMI CTAG 3 cut(s) 297, 414, 653
SstI GAGCTC 1 cut(s) 81
StyD4I CCNGG 3 cut(s) 417, 572, 737
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 2 cut(s) 330, 634
TaqII GACCGA 1 cut(s) 320
TasI AATT 2 cut(s) 433, 536
TauI GCSGC 2 cut(s) 147, 293
TfiI GAWTC 2 cut(s) 631, 748
Tru1I TTAA 1 cut(s) 818
Tru9I TTAA 1 cut(s) 818
TseFI GTSAC 2 cut(s) 173, 262
TseI GCWGC 2 cut(s) 230, 425
Tsp45I GTSAC 2 cut(s) 173, 262
TspDTI ATGAA 1 cut(s) 696
TspGWI ACGGA 2 cut(s) 40, 706
VneI GTGCAC 1 cut(s) 390
VpaK11BI GGWCC 1 cut(s) 48
XceI RCATGY 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 330
XspI CTAG 3 cut(s) 297, 414, 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.