Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008996

Physical Location & Seq

Genomic Coordinates Reverse (-)

42341281 .. 42364890

Gene Structure 23610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1284200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCGGGCGTATCGCTCAATTGCGGCGACTGTGGGACTCTGCTGAGGTCGGTTGAGGAAGCCCAAGAGCATGCCGAGCTCAGCTCCCACTCCAACTTCTCTGAGTCCACGGAAGCTGTTCTCAATCTCGTTTGCTCTTCCTGCGGCAAACCTCGCCGATCCAAAACTGAAAGTGATTTGCACACCAAAAGAACAGGGCGTACTGAGTTTGTTGATAAGACTGCGGATGCAGCTAAACCAATAAGTTTGGAGGTTCCAAAGGCTACTCCTTCAGGGTCCAAAGAGGCTGTTTGTGCAAGTAGCCATGTGCCAGAAGAAATGGTCGTCCCGGAGGTTGACAAAAAGCTGCTTGAGGAACTTGAAGGAATGGGCTTTTCGACACCACGGGCAACCCGTGCACTTCACCATTCTGGCAACGCTAGCTTGGAGGTTGCTGTCAATTGGGTAGTTGAACATGAGAATGATCCGGACATTGATGAAATGCCTTCGGTACCAATAAACAGCAAATTTGAGGCTCCAAAACCTTCTCTCACGCAAGAACAATTGAAAGCCAAGCAACAAGAGCTTAGTATGTGCAAGGTAAGGATTCGCGTGGGCAAGGAACTCCTAGAAGCGAAGAGAATAGAAGAAGACAATGAAAGAAAACGGATTATTGCTTTGGGAAAAGCGGAGAAAGATGAAGAGAAAAGAGCTAGGGAAAGGATTCGTCCTTTTTGCGTTGGATTCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUB UBA

Protein Analysis

244

Amino Acids

26.86

Weight (kDa)

5.76

Isoelectric Point (pI)

45.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_OTU1_C	PF24560	3 - 35	8.9e-09	Ubiquitin thioesterase OTU1, C-terminal C2H2-type zinc finger
UBA_7	PF22562	113 - 160	1e-16	UBA-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04850 AT1G04850
fragaria_vesca	FvH4_4g13780 FvH4_4g13780 FvH4_4g13780
malus_domestica	MD04G1012000.v1.1 MD13G1284100.v1.1 MD13G1284200.v1.1
prunus_persica	Prupe.1G010500_v2.0.a1 Prupe.1G010500_v2.0.a1
pyrus_communis	pycom04g00960 pycom420g01260
rosa_chinensis	RchiOBHm_Chr4g0414661
rosa_laevigata	RLG00000008127
rosa_multiflora	Rmu_sc0001192.1_g000017 Rmu_sc0006138.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358470
rosa_rugosa	Rorug04G0129300
rosa_samantha	Rh4AG187600 Rh4BG186400 Rh4CG199900
rosa_wichuraiana	Rw4G016040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	490
AccB1I	GGYRCC	1 cut(s)	490
AccII	CGCG	1 cut(s)	591
AccIII	TCCGGA	1 cut(s)	466
AciI	CCGC	5 cut(s)	5, 24, 144, 224, 668
AclWI	GGATC	2 cut(s)	153, 458
AcsI	RAATTY	1 cut(s)	506
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	2 cut(s)	202, 492
AgsI	TTSAA	3 cut(s)	362, 452, 547
AluBI	AGCT	8 cut(s)	79, 84, 116, 233, 346, 423, 565, 692
AluI	AGCT	8 cut(s)	79, 84, 116, 233, 346, 423, 565, 692
Alw21I	GWGCWC	2 cut(s)	81, 400
Alw44I	GTGCAC	1 cut(s)	396
AlwI	GGATC	2 cut(s)	153, 458
Aor13HI	TCCGGA	1 cut(s)	466
ApaLI	GTGCAC	1 cut(s)	396
ApeKI	GCWGC	2 cut(s)	230, 346
ApoI	RAATTY	1 cut(s)	506
Asp700I	GAANNNNTTC	2 cut(s)	117, 702
Asp718I	GGTACC	1 cut(s)	490
AspS9I	GGNCC	1 cut(s)	276
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	1 cut(s)	395
AsuNHI	GCTAGC	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	276
BaeGI	GKGCMC	1 cut(s)	400
BanI	GGYRCC	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	636
Bbv12I	GWGCWC	2 cut(s)	81, 400
BbvCI	CCTCAGC	1 cut(s)	44
BbvI	GCAGC	2 cut(s)	242, 333
BcnI	CCSGG	1 cut(s)	329
BfaI	CTAG	3 cut(s)	420, 608, 693
BisI	GCNGC	4 cut(s)	25, 145, 231, 347
BlpI	GCTNAGC	1 cut(s)	80
BlsI	GCNGC	4 cut(s)	26, 146, 232, 348
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	4 cut(s)	255, 277, 492, 516
BmrFI	CCNGG	1 cut(s)	329
BmsI	GCATC	1 cut(s)	217
BmtI	GCTAGC	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	636
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
Bpu10I	CCTNAGC	1 cut(s)	44
Bpu1102I	GCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	108, 383
BsaWI	WCCGGW	1 cut(s)	466
BseAI	TCCGGA	1 cut(s)	466
BseDI	CCNNGG	2 cut(s)	108, 383
BseGI	GGATG	1 cut(s)	232
BseMII	CTCAG	4 cut(s)	35, 93, 94, 195
BseSI	GKGCMC	1 cut(s)	400
BseXI	GCAGC	2 cut(s)	242, 333
Bsh1236I	CGCG	1 cut(s)	591
BshNI	GGYRCC	1 cut(s)	490
BsiHKAI	GWGCWC	2 cut(s)	81, 400
BsiSI	CCGG	2 cut(s)	329, 467
BslFI	GGGAC	2 cut(s)	49, 311
BsmFI	GGGAC	2 cut(s)	49, 311
Bsp1286I	GDGCHC	2 cut(s)	81, 400
Bsp13I	TCCGGA	1 cut(s)	466
Bsp143I	GATC	2 cut(s)	158, 463
Bsp1720I	GCTNAGC	1 cut(s)	80
BspACI	CCGC	5 cut(s)	5, 24, 144, 224, 668
BspCNI	CTCAG	4 cut(s)	36, 93, 94, 196
BspEI	TCCGGA	1 cut(s)	466
BspFNI	CGCG	1 cut(s)	591
BspLI	GGNNCC	4 cut(s)	255, 277, 492, 516
BspOI	GCTAGC	1 cut(s)	423
BspPI	GGATC	2 cut(s)	153, 458
BspQI	GCTCTTC	1 cut(s)	142
BspT107I	GGYRCC	1 cut(s)	490
BssECI	CCNNGG	2 cut(s)	108, 383
BssMI	GATC	2 cut(s)	158, 463
Bst4CI	ACNGT	1 cut(s)	32
Bst6I	CTCTTC	3 cut(s)	142, 611, 675
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstC8I	GCNNGC	3 cut(s)	7, 72, 421
BstDEI	CTNAG	5 cut(s)	44, 80, 102, 204, 566
BstDSI	CCRYGG	2 cut(s)	108, 383
BstF5I	GGATG	1 cut(s)	232
BstFNI	CGCG	1 cut(s)	591
BstKTI	GATC	2 cut(s)	161, 466
BstMBI	GATC	2 cut(s)	158, 463
BstMWI	GCNNNNNNNGC	8 cut(s)	76, 141, 153, 230, 293, 395, 420, 562
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	327
BstSLI	GKGCMC	1 cut(s)	400
BstUI	CGCG	1 cut(s)	591
BstV1I	GCAGC	2 cut(s)	242, 333
BstV2I	GAAGAC	1 cut(s)	636
BtgI	CCRYGG	2 cut(s)	108, 383
BtsCI	GGATG	1 cut(s)	232
Cac8I	GCNNGC	3 cut(s)	7, 72, 421
Cfr13I	GGNCC	1 cut(s)	276
Csp6I	GTAC	2 cut(s)	201, 491
CviAII	CATG	3 cut(s)	71, 305, 455
CviQI	GTAC	2 cut(s)	201, 491
DdeI	CTNAG	5 cut(s)	44, 80, 102, 204, 566
DpnI	GATC	2 cut(s)	160, 465
DpnII	GATC	2 cut(s)	158, 463
Eam1104I	CTCTTC	3 cut(s)	142, 611, 675
EarI	CTCTTC	3 cut(s)	142, 611, 675
Ecl136II	GAGCTC	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	276
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	81
FaeI	CATG	3 cut(s)	74, 308, 458
FaiI	YATR	6 cut(s)	72, 306, 456, 572, 728, 730
FaqI	GGGAC	2 cut(s)	49, 311
FatI	CATG	3 cut(s)	70, 304, 454
Fnu4HI	GCNGC	4 cut(s)	25, 145, 231, 347
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	4 cut(s)	25, 145, 231, 347
FspBI	CTAG	3 cut(s)	420, 608, 693
GluI	GCNGC	4 cut(s)	25, 145, 231, 347
HapII	CCGG	2 cut(s)	329, 467
Hin1II	CATG	3 cut(s)	74, 308, 458
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	5 cut(s)	37, 104, 586, 703, 723
HpaII	CCGG	2 cut(s)	329, 467
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	3 cut(s)	108, 337, 398
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	1 cut(s)	467
Hpy8I	GTNNAC	3 cut(s)	108, 337, 398
HpyAV	CCTTC	4 cut(s)	279, 356, 495, 534
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4V	TGCA	5 cut(s)	181, 230, 296, 398, 576
HpyF10VI	GCNNNNNNNGC	8 cut(s)	76, 141, 153, 230, 293, 395, 420, 562
HpyF3I	CTNAG	5 cut(s)	44, 80, 102, 204, 566
Hsp92II	CATG	3 cut(s)	74, 308, 458
Kpn2I	TCCGGA	1 cut(s)	466
KpnI	GGTACC	1 cut(s)	494
Kzo9I	GATC	2 cut(s)	158, 463
LguI	GCTCTTC	1 cut(s)	142
LmnI	GCTCC	2 cut(s)	89, 520
LpnPI	CCDG	7 cut(s)	154, 180, 258, 324, 342, 396, 480
Lsp1109I	GCAGC	2 cut(s)	242, 333
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	3 cut(s)	420, 608, 693
MalI	GATC	2 cut(s)	160, 465
MboI	GATC	2 cut(s)	158, 463
MboII	GAAGA	6 cut(s)	129, 326, 628, 638, 641, 692
MfeI	CAATTG	3 cut(s)	19, 439, 542
MhlI	GDGCHC	2 cut(s)	81, 400
MluCI	AATT	4 cut(s)	19, 439, 506, 542
MlyI	GAGTC	2 cut(s)	31, 113
MmeI	TCCRAC	2 cut(s)	117, 700
MnlI	CCTC	9 cut(s)	39, 49, 162, 244, 277, 325, 346, 421, 505
MroI	TCCGGA	1 cut(s)	466
MroXI	GAANNNNTTC	2 cut(s)	117, 702
MslI	CAYNNNNRTG	1 cut(s)	459
MspI	CCGG	2 cut(s)	329, 467
MspR9I	CCNGG	1 cut(s)	329
MunI	CAATTG	3 cut(s)	19, 439, 542
MvnI	CGCG	1 cut(s)	591
MwoI	GCNNNNNNNGC	8 cut(s)	76, 141, 153, 230, 293, 395, 420, 562
NciI	CCSGG	1 cut(s)	329
NdeII	GATC	2 cut(s)	158, 463
NheI	GCTAGC	1 cut(s)	419
NlaIII	CATG	3 cut(s)	74, 308, 458
NlaIV	GGNNCC	4 cut(s)	255, 277, 492, 516
NmeAIII	GCCGAG	1 cut(s)	100
NspI	RCATGY	1 cut(s)	74
PaeI	GCATGC	1 cut(s)	74
PciSI	GCTCTTC	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	1 cut(s)	391
PdmI	GAANNNNTTC	2 cut(s)	117, 702
PfeI	GAWTC	3 cut(s)	586, 703, 723
PfoI	TCCNGGA	1 cut(s)	327
PkrI	GCNGC	4 cut(s)	26, 146, 232, 348
PleI	GAGTC	2 cut(s)	31, 112
PpsI	GAGTC	2 cut(s)	31, 112
Psp124BI	GAGCTC	1 cut(s)	81
PspN4I	GGNNCC	4 cut(s)	255, 277, 492, 516
PspPI	GGNCC	1 cut(s)	276
PsrI	GAACNNNNNNTAC	2 cut(s)	184, 216
RsaI	GTAC	2 cut(s)	202, 492
RsaNI	GTAC	2 cut(s)	201, 491
RseI	CAYNNNNRTG	1 cut(s)	459
SacI	GAGCTC	1 cut(s)	81
SapI	GCTCTTC	1 cut(s)	142
SatI	GCNGC	4 cut(s)	25, 145, 231, 347
Sau3AI	GATC	2 cut(s)	158, 463
Sau96I	GGNCC	1 cut(s)	276
SchI	GAGTC	2 cut(s)	31, 113
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	2 cut(s)	81, 400
SfaNI	GCATC	1 cut(s)	217
SinI	GGWCC	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
SphI	GCATGC	1 cut(s)	74
Sse9I	AATT	4 cut(s)	19, 439, 506, 542
SsiI	CCGC	5 cut(s)	5, 24, 144, 224, 668
SspMI	CTAG	3 cut(s)	420, 608, 693
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	327
TaaI	ACNGT	1 cut(s)	32
TaqI	TCGA	1 cut(s)	377
TasI	AATT	4 cut(s)	19, 439, 506, 542
TauI	GCSGC	2 cut(s)	27, 147
TfiI	GAWTC	3 cut(s)	586, 703, 723
TseI	GCWGC	2 cut(s)	230, 346
TspDTI	ATGAA	4 cut(s)	492, 651, 693, 715
TspGWI	ACGGA	2 cut(s)	125, 661
VneI	GTGCAC	1 cut(s)	396
VpaK11BI	GGWCC	1 cut(s)	276
XapI	RAATTY	1 cut(s)	506
XceI	RCATGY	1 cut(s)	74
XmnI	GAANNNNTTC	2 cut(s)	117, 702
XspI	CTAG	3 cut(s)	420, 608, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.